Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0016643

Physical Location & Seq

Genomic Coordinates Reverse (-)

3423249 .. 3426462

Gene Structure 3214 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG044600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGAATCGCAGTACAAATCCGAAGGCCGTGAGCTAAGGATAGAGTACAGCTTCCTCCGAAAAGTAGCTGGAGTTCCCACCAAGTTCAGGTACAATGAGCTAGAAGAAGCCACAGACAACTTCCAGGCACTGCTTGGCCAAGGGGCTTCTGCGAAAGTGTTCAAAGGGATTCTCAGTGATGGCTCTCCTGTTGCAGTAAAAAGGCTTGATGTGGAGGAGCGCGGCGACAGGGAATTTAGATCAGAAGTTTCTGCAATAGCTAGTCTACAACATGTGAATCTTGTGAGGCTTCTTGGATATTGCTGTGTTAATCCTGCAGGGCCTCGGTTCCTTGTGTATGACTTCATCTCAAATGGCTCTTTGGATAGTTGGATTTTCAATAGAAAGGTAAGGCCTAATCCCCGCGGAGGGTGCTTGTCTTGGGATTTAAGGTACAGGGTTGCTATTGATGTTGCCAAGGCACTTTCCTATTTGCATCATGATTGTAGGAAAAGGATTTTGCACCTTGATGTTAAGCCGGAAAATATTCTCTTGGATGAGAATTTCCGAGGAATTGTGGCGGATTTTGGTTTGTCAAAACTAATGGGAAGAGATGAAAGTAATGTCATGACAACAATAAGGGGCACTAGAGGGTACTTGGCTCCTGAATGGCTTTTGGAGCACGGAATTTCAGAGAAATCGGATACTTATAGCTATGGAATGGTGCTTCTTGAGATGATTGGAGGTAGAAGAAATGTGAGCTTCATCGAAAAGGGTACTCATTGCAAGTCTCATAGGAAATGGCAATACTTTCCCAAAACCGTGAATGAGAAAATGAGAGAAGGCAAGCTCATGGAGATTGTCGATCAGAGACTATTAGATAGTGGTGGCATTGATGAGAGGGAGTTGAAAAGGCTTGTTCATGTAGCCATTTGGTGCATACAAGAGAGGGCTAGTCTTAGGCCTTCAATGTCTCATGTGGTTGAAATGCTTGAAGGGGGTTTGGTTGTGGAGCAGCCTCCAGATACCCAAATGACCATTGTTGATTTCTTGACAGTAGATGAAGAAGAGTCCCAGCCACAGATCAATGGTCATCACAGGCCAGACATTGCTGCTGCCTTGGCAGCTCGTCAAGTAGATAGCAATAATGAAAACTTATCCGCAGCTTACTCATATGCAAATGCAATGTCTGCCATAACACCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

395

Amino Acids

44.78

Weight (kDa)

6.62

Isoelectric Point (pI)

32.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	41 - 323	6.3e-35	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	43 - 322	1.6e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20050
fragaria_vesca	FvH4_1g03860
malus_domestica	MD02G1037000.v1.1 MD15G1177100.v1.1
prunus_persica	Prupe.7G238400_v2.0.a1 Prupe.7G238400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089251
rosa_laevigata	RLG00000016008
rosa_multiflora	Rmu_sc0008322.1_g000020
rosa_rugosa	Rorug01G0488600
rosa_samantha	Rh2AG044600 Rh2BG043300 Rh2DG043600
rosa_wichuraiana	Rw2G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	265
AccII	CGCG	2 cut(s)	222, 405
AciI	CCGC	5 cut(s)	222, 403, 405, 560, 1140
AcoI	YGGCCR	1 cut(s)	136
AcsI	RAATTY	3 cut(s)	233, 541, 666
AfaI	GTAC	6 cut(s)	14, 47, 92, 434, 635, 757
AfiI	CCNNNNNNNGG	3 cut(s)	87, 407, 408
AflIII	ACRYGT	1 cut(s)	271
AgsI	TTSAA	6 cut(s)	163, 379, 889, 948, 965, 974
AjnI	CCWGG	1 cut(s)	123
Alw21I	GWGCWC	1 cut(s)	663
Alw26I	GTCTC	3 cut(s)	774, 844, 957
AlwNI	CAGNNNCTG	1 cut(s)	130
AoxI	GGCC	6 cut(s)	25, 136, 320, 392, 941, 1079
ApeKI	GCWGC	5 cut(s)	994, 1091, 1094, 1103, 1142
ApoI	RAATTY	3 cut(s)	233, 541, 666
ArsI	GACNNNNNNTTYG	2 cut(s)	1151, 1183
Asp700I	GAANNNNTTC	2 cut(s)	158, 525
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	320
BaeGI	GKGCMC	1 cut(s)	626
BalI	TGGCCA	1 cut(s)	138
Bbv12I	GWGCWC	1 cut(s)	663
BbvI	GCAGC	5 cut(s)	1006, 1078, 1081, 1115, 1154
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	1 cut(s)	12
BciT130I	CCWGG	1 cut(s)	125
BciVI	GTATCC	1 cut(s)	676
BcoDI	GTCTC	3 cut(s)	774, 844, 957
BfaI	CTAG	4 cut(s)	101, 261, 627, 933
BfmI	CTRYAG	1 cut(s)	315
BfuI	GTATCC	1 cut(s)	676
BisI	GCNGC	6 cut(s)	223, 995, 1092, 1095, 1104, 1143
BlsI	GCNGC	6 cut(s)	224, 996, 1093, 1096, 1105, 1144
Bme1390I	CCNGG	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	329, 642
BmrFI	CCNGG	1 cut(s)	125
BmsI	GCATC	1 cut(s)	484
BpmI	CTGGAG	2 cut(s)	90, 984
Bpu10I	CCTNAGC	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	731
BsaJI	CCNNGG	6 cut(s)	139, 323, 403, 456, 547, 1098
Bsc4I	CCNNNNNNNGG	3 cut(s)	87, 407, 408
Bse3DI	GCAATG	3 cut(s)	760, 1086, 1170
BseBI	CCWGG	1 cut(s)	125
BseDI	CCNNGG	6 cut(s)	139, 323, 403, 456, 547, 1098
BseGI	GGATG	1 cut(s)	541
BseLI	CCNNNNNNNGG	3 cut(s)	87, 407, 408
BseMI	GCAATG	3 cut(s)	760, 1086, 1170
BseMII	CTCAG	1 cut(s)	187
BseRI	GAGGAG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	626
BseXI	GCAGC	5 cut(s)	1006, 1078, 1081, 1115, 1154
BseYI	CCCAGC	1 cut(s)	1053
Bsh1236I	CGCG	2 cut(s)	222, 405
BshFI	GGCC	6 cut(s)	27, 138, 322, 394, 943, 1081
BsiHKAI	GWGCWC	1 cut(s)	663
BsiSI	CCGG	1 cut(s)	518
BslFI	GGGAC	1 cut(s)	1036
BslI	CCNNNNNNNGG	3 cut(s)	87, 407, 408
BsmAI	GTCTC	3 cut(s)	774, 844, 957
BsmFI	GGGAC	1 cut(s)	1036
BsnI	GGCC	6 cut(s)	27, 138, 322, 394, 943, 1081
Bsp1286I	GDGCHC	2 cut(s)	626, 663
Bsp143I	GATC	3 cut(s)	239, 844, 1062
BspACI	CCGC	5 cut(s)	222, 403, 405, 560, 1140
BspANI	GGCC	6 cut(s)	27, 138, 322, 394, 943, 1081
BspCNI	CTCAG	1 cut(s)	186
BspFNI	CGCG	2 cut(s)	222, 405
BspHI	TCATGA	2 cut(s)	478, 606
BspLI	GGNNCC	2 cut(s)	329, 642
BspMAI	CTGCAG	1 cut(s)	319
BsrDI	GCAATG	3 cut(s)	760, 1086, 1170
BssECI	CCNNGG	6 cut(s)	139, 323, 403, 456, 547, 1098
BssMI	GATC	3 cut(s)	239, 844, 1062
BssT1I	CCWWGG	3 cut(s)	139, 456, 1098
Bst2UI	CCWGG	1 cut(s)	125
Bst4CI	ACNGT	2 cut(s)	802, 1036
Bst6I	CTCTTC	2 cut(s)	583, 1041
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstC8I	GCNNGC	1 cut(s)	827
BstDEI	CTNAG	3 cut(s)	35, 173, 938
BstDSI	CCRYGG	1 cut(s)	403
BstF5I	GGATG	1 cut(s)	541
BstFNI	CGCG	2 cut(s)	222, 405
BstHHI	GCGC	1 cut(s)	222
BstKTI	GATC	3 cut(s)	242, 847, 1065
BstMAI	GTCTC	3 cut(s)	774, 844, 957
BstMBI	GATC	3 cut(s)	239, 844, 1062
BstMWI	GCNNNNNNNGC	5 cut(s)	411, 658, 1100, 1103, 1169
BstNI	CCWGG	1 cut(s)	125
BstNSI	RCATGY	1 cut(s)	275
BstSCI	CCNGG	1 cut(s)	123
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	626
BstUI	CGCG	2 cut(s)	222, 405
BstV1I	GCAGC	5 cut(s)	1006, 1078, 1081, 1115, 1154
BsuI	GTATCC	1 cut(s)	676
BsuRI	GGCC	6 cut(s)	27, 138, 322, 394, 943, 1081
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	1 cut(s)	541
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	128, 181
Cac8I	GCNNGC	1 cut(s)	827
CaiI	CAGNNNCTG	1 cut(s)	130
CciI	TCATGA	2 cut(s)	478, 606
CfoI	GCGC	1 cut(s)	222
Cfr13I	GGNCC	1 cut(s)	320
Cfr42I	CCGCGG	1 cut(s)	406
Csp6I	GTAC	6 cut(s)	13, 46, 91, 433, 634, 756
CviAII	CATG	6 cut(s)	272, 479, 607, 832, 902, 956
CviQI	GTAC	6 cut(s)	13, 46, 91, 433, 634, 756
DdeI	CTNAG	3 cut(s)	35, 173, 938
DpnI	GATC	3 cut(s)	241, 846, 1064
DpnII	GATC	3 cut(s)	239, 844, 1062
EaeI	YGGCCR	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	583, 1041
EarI	CTCTTC	2 cut(s)	583, 1041
EciI	GGCGGA	1 cut(s)	575
Eco130I	CCWWGG	3 cut(s)	139, 456, 1098
Eco147I	AGGCCT	2 cut(s)	394, 943
EcoO109I	RGGNCCY	1 cut(s)	320
EcoRII	CCWGG	1 cut(s)	123
EcoT14I	CCWWGG	3 cut(s)	139, 456, 1098
ErhI	CCWWGG	3 cut(s)	139, 456, 1098
FaeI	CATG	6 cut(s)	275, 482, 610, 835, 905, 959
FaqI	GGGAC	1 cut(s)	1036
FatI	CATG	6 cut(s)	271, 478, 606, 831, 901, 955
FauI	CCCGC	1 cut(s)	410
FauNDI	CATATG	1 cut(s)	1153
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	6 cut(s)	223, 995, 1092, 1095, 1104, 1143
FokI	GGATG	1 cut(s)	548
Fsp4HI	GCNGC	6 cut(s)	223, 995, 1092, 1095, 1104, 1143
FspBI	CTAG	4 cut(s)	101, 261, 627, 933
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	6 cut(s)	223, 995, 1092, 1095, 1104, 1143
GsaI	CCCAGC	1 cut(s)	1057
GsuI	CTGGAG	2 cut(s)	90, 984
HaeIII	GGCC	6 cut(s)	27, 138, 322, 394, 943, 1081
HapII	CCGG	1 cut(s)	518
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	6 cut(s)	275, 482, 610, 835, 905, 959
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	5, 169, 277, 1049
HpaII	CCGG	1 cut(s)	518
Hpy166II	GTNNAC	1 cut(s)	266
Hpy188I	TCNGA	7 cut(s)	22, 59, 244, 548, 673, 682, 849
Hpy188III	TCNNGA	6 cut(s)	479, 607, 644, 710, 1001, 1030
Hpy8I	GTNNAC	1 cut(s)	266
HpyAV	CCTTC	4 cut(s)	17, 815, 954, 968
HpyCH4III	ACNGT	2 cut(s)	802, 1036
HpyCH4V	TGCA	9 cut(s)	194, 254, 317, 475, 502, 765, 918, 1157, 1163
HpyF10VI	GCNNNNNNNGC	5 cut(s)	411, 658, 1100, 1103, 1169
HpyF3I	CTNAG	3 cut(s)	35, 173, 938
Hsp92II	CATG	6 cut(s)	275, 482, 610, 835, 905, 959
HspAI	GCGC	1 cut(s)	220
KspI	CCGCGG	1 cut(s)	406
Kzo9I	GATC	3 cut(s)	239, 844, 1062
LmnI	GCTCC	4 cut(s)	217, 646, 658, 991
Lsp1109I	GCAGC	5 cut(s)	1006, 1078, 1081, 1115, 1154
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	4 cut(s)	101, 261, 627, 933
MalI	GATC	3 cut(s)	241, 846, 1064
MboI	GATC	3 cut(s)	239, 844, 1062
MboII	GAAGA	5 cut(s)	116, 600, 741, 1055, 1058
MhlI	GDGCHC	2 cut(s)	626, 663
MlsI	TGGCCA	1 cut(s)	138
MluCI	AATT	4 cut(s)	233, 541, 552, 666
MluNI	TGGCCA	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	1058
MmeI	TCCRAC	1 cut(s)	350
Mox20I	TGGCCA	1 cut(s)	138
MroXI	GAANNNNTTC	2 cut(s)	158, 525
MscI	TGGCCA	1 cut(s)	138
MseI	TTAA	3 cut(s)	309, 428, 513
MslI	CAYNNNNRTG	1 cut(s)	507
Msp20I	TGGCCA	1 cut(s)	138
MspA1I	CMGCKG	1 cut(s)	405
MspI	CCGG	1 cut(s)	518
MspR9I	CCNGG	1 cut(s)	125
MvaI	CCWGG	1 cut(s)	125
MvnI	CGCG	2 cut(s)	222, 405
MwoI	GCNNNNNNNGC	5 cut(s)	411, 658, 1100, 1103, 1169
NdeI	CATATG	1 cut(s)	1153
NdeII	GATC	3 cut(s)	239, 844, 1062
NlaIII	CATG	6 cut(s)	275, 482, 610, 835, 905, 959
NlaIV	GGNNCC	2 cut(s)	329, 642
NspI	RCATGY	1 cut(s)	275
PagI	TCATGA	2 cut(s)	478, 606
PceI	AGGCCT	2 cut(s)	394, 943
PciI	ACATGT	1 cut(s)	271
PdmI	GAANNNNTTC	2 cut(s)	158, 525
PfeI	GAWTC	3 cut(s)	5, 169, 277
PkrI	GCNGC	6 cut(s)	224, 996, 1093, 1096, 1105, 1144
PleI	GAGTC	1 cut(s)	1057
PpsI	GAGTC	1 cut(s)	1057
PscI	ACATGT	1 cut(s)	271
Psp6I	CCWGG	1 cut(s)	123
PspFI	CCCAGC	1 cut(s)	1053
PspGI	CCWGG	1 cut(s)	123
PspN4I	GGNNCC	2 cut(s)	329, 642
PspPI	GGNCC	1 cut(s)	320
PsrI	GAACNNNNNNTAC	2 cut(s)	57, 89
PstI	CTGCAG	1 cut(s)	319
PstNI	CAGNNNCTG	1 cut(s)	130
RsaI	GTAC	6 cut(s)	14, 47, 92, 434, 635, 757
RsaNI	GTAC	6 cut(s)	13, 46, 91, 433, 634, 756
RseI	CAYNNNNRTG	1 cut(s)	507
SacII	CCGCGG	1 cut(s)	406
SaqAI	TTAA	3 cut(s)	309, 428, 513
SatI	GCNGC	6 cut(s)	223, 995, 1092, 1095, 1104, 1143
Sau3AI	GATC	3 cut(s)	239, 844, 1062
Sau96I	GGNCC	1 cut(s)	320
SbfI	CCTGCAGG	1 cut(s)	319
SchI	GAGTC	1 cut(s)	1058
ScrFI	CCNGG	1 cut(s)	125
SdaI	CCTGCAGG	1 cut(s)	319
SduI	GDGCHC	2 cut(s)	626, 663
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	315
Sfr303I	CCGCGG	1 cut(s)	406
SgrBI	CCGCGG	1 cut(s)	406
SmiMI	CAYNNNNRTG	1 cut(s)	507
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse8387I	CCTGCAGG	1 cut(s)	319
Sse9I	AATT	4 cut(s)	233, 541, 552, 666
SseBI	AGGCCT	2 cut(s)	394, 943
SsiI	CCGC	5 cut(s)	222, 403, 405, 560, 1140
SspI	AATATT	1 cut(s)	526
SspMI	CTAG	4 cut(s)	101, 261, 627, 933
StuI	AGGCCT	2 cut(s)	394, 943
StyD4I	CCNGG	1 cut(s)	123
StyI	CCWWGG	3 cut(s)	139, 456, 1098
TaaI	ACNGT	2 cut(s)	802, 1036
TaqI	TCGA	2 cut(s)	747, 843
TasI	AATT	4 cut(s)	233, 541, 552, 666
TatI	WGTACW	2 cut(s)	12, 45
TauI	GCSGC	1 cut(s)	225
TfiI	GAWTC	3 cut(s)	5, 169, 277
Tru1I	TTAA	3 cut(s)	309, 428, 513
Tru9I	TTAA	3 cut(s)	309, 428, 513
TscAI	CASTG	2 cut(s)	135, 181
TseI	GCWGC	5 cut(s)	994, 1091, 1094, 1103, 1142
TspDTI	ATGAA	6 cut(s)	334, 609, 733, 890, 1056, 1143
TspGWI	ACGGA	1 cut(s)	678
TspRI	CASTG	2 cut(s)	135, 181
XapI	RAATTY	3 cut(s)	233, 541, 666
XceI	RCATGY	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	131
XmiI	GTMKAC	1 cut(s)	265
XmnI	GAANNNNTTC	2 cut(s)	158, 525
XspI	CTAG	4 cut(s)	101, 261, 627, 933

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.