Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0016643

Physical Location & Seq

Genomic Coordinates Reverse (-)

2049607 .. 2051260

Gene Structure 1654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g03860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGACTTCATCTCAAATGGGTCATTGGATGGTTGGATTTTTAATAAAAAGGAAAAGGGTTTTGCACCTTGATGTTAAGCCGGAAAATATTCTCTTGGATGAGAATTTCCGAGCAATTGTGGCGGATTTTGGTTTATCAAAACTAATGGGAAGAGATGAGAGTAATGTCATGACAACAATAAGGGGCACTAGAGGGTACTTAGCTCCTGAATGGCTTTTGGAGCATGGAATTTCAGAGAAATCGGATACTTATAGCTATGGAATGGTGCTTCTTGAGATGATTGGAGGCAGAAGAAATGTGAGCTTTATCGAAAAGGGTACTCATAACAGGTCTCGTAAGAAATGGCAATACTTCCCCAAAACTGTGAATGAGAAAATGAGAGAAGGTAAGCTCATGGAGATTGTTGATCAGAGACTATTAGATGGTGGAGGCATTGATGAAAGGGAATTGAAAAGGCTTGTTCATGTAGCCATTTGGTGCATACAAGAGCGGGCTAGTCTTAGGCCTTCAATGTCTCATGTGGTTGAAATGCTTGAAACGGGTTTAGATGTGGAGCAGCCTCCAGATACCCAAATGACCATTGTAGATTTCTTGACACTTGATGAAGAAGAATCACAGTCACAAATCAATGGTCATCACAGGCCAGACATTGTTGCCGCCTTGGCAGCTCAGCAAGTAGATAGCAATAATGAAAACTTATCCTCAGCACACTCATATGCAACTGCAATGTCTGATATAACACCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

250

Amino Acids

28.38

Weight (kDa)

5.87

Isoelectric Point (pI)

38.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	15 - 177	1.5e-15	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	17 - 176	1.6e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20050
fragaria_vesca	FvH4_1g03860
malus_domestica	MD02G1037000.v1.1 MD15G1177100.v1.1
prunus_persica	Prupe.7G238400_v2.0.a1 Prupe.7G238400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089251
rosa_laevigata	RLG00000016008
rosa_multiflora	Rmu_sc0008322.1_g000020
rosa_rugosa	Rorug01G0488600
rosa_samantha	Rh2AG044600 Rh2BG043300 Rh2DG043600
rosa_wichuraiana	Rw2G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	490
AciI	CCGC	3 cut(s)	122, 490, 657
AcsI	RAATTY	2 cut(s)	103, 228
AfaI	GTAC	2 cut(s)	197, 319
AgsI	TTSAA	4 cut(s)	451, 510, 527, 536
AluBI	AGCT	5 cut(s)	203, 255, 303, 391, 668
AluI	AGCT	5 cut(s)	203, 255, 303, 391, 668
Alw26I	GTCTC	3 cut(s)	336, 406, 519
AoxI	GGCC	2 cut(s)	503, 641
ApeKI	GCWGC	2 cut(s)	556, 665
ApoI	RAATTY	2 cut(s)	103, 228
ArsI	GACNNNNNNTTYG	2 cut(s)	616, 648
Asp700I	GAANNNNTTC	1 cut(s)	87
BaeGI	GKGCMC	1 cut(s)	188
BbvCI	CCTCAGC	1 cut(s)	703
BbvI	GCAGC	2 cut(s)	568, 677
BccI	CCATC	2 cut(s)	22, 416
BciVI	GTATCC	1 cut(s)	238
BclI	TGATCA	1 cut(s)	406
BcoDI	GTCTC	3 cut(s)	336, 406, 519
BfaI	CTAG	2 cut(s)	189, 495
BfuI	GTATCC	1 cut(s)	238
BglI	GCCNNNNNGGC	1 cut(s)	662
BisI	GCNGC	3 cut(s)	557, 657, 666
BlpI	GCTNAGC	1 cut(s)	669
BlsI	GCNGC	3 cut(s)	558, 658, 667
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	703
Bpu1102I	GCTNAGC	1 cut(s)	669
BpuEI	CTTGAG	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	336
BsaJI	CCNNGG	1 cut(s)	660
Bse3DI	GCAATG	1 cut(s)	732
BseDI	CCNNGG	1 cut(s)	660
BseGI	GGATG	2 cut(s)	33, 103
BseMI	GCAATG	1 cut(s)	732
BseMII	CTCAG	2 cut(s)	683, 717
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	568, 677
BshFI	GGCC	2 cut(s)	505, 643
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	3 cut(s)	336, 406, 519
BsnI	GGCC	2 cut(s)	505, 643
Bso31I	GGTCTC	1 cut(s)	336
Bsp1286I	GDGCHC	1 cut(s)	188
Bsp143I	GATC	1 cut(s)	406
Bsp1720I	GCTNAGC	1 cut(s)	669
BspACI	CCGC	3 cut(s)	122, 490, 657
BspANI	GGCC	2 cut(s)	505, 643
BspCNI	CTCAG	2 cut(s)	682, 716
BspHI	TCATGA	1 cut(s)	168
BspTNI	GGTCTC	1 cut(s)	336
BsrBI	CCGCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	732
BssECI	CCNNGG	1 cut(s)	660
BssMI	GATC	1 cut(s)	406
BssT1I	CCWWGG	1 cut(s)	660
Bst4CI	ACNGT	2 cut(s)	364, 618
Bst6I	CTCTTC	1 cut(s)	145
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	4 cut(s)	199, 500, 669, 703
BstF5I	GGATG	2 cut(s)	33, 103
BstKTI	GATC	1 cut(s)	409
BstMAI	GTCTC	3 cut(s)	336, 406, 519
BstMBI	GATC	1 cut(s)	406
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 220, 662, 665
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	568, 677
BsuI	GTATCC	1 cut(s)	238
BsuRI	GGCC	2 cut(s)	505, 643
BtsCI	GGATG	2 cut(s)	33, 103
Cac8I	GCNNGC	1 cut(s)	492
CciI	TCATGA	1 cut(s)	168
Csp6I	GTAC	2 cut(s)	196, 318
CviAII	CATG	5 cut(s)	169, 224, 394, 464, 518
CviQI	GTAC	2 cut(s)	196, 318
DdeI	CTNAG	4 cut(s)	199, 500, 669, 703
DpnI	GATC	1 cut(s)	408
DpnII	GATC	1 cut(s)	406
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
EciI	GGCGGA	1 cut(s)	137
Eco130I	CCWWGG	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	505
Eco31I	GGTCTC	1 cut(s)	336
EcoT14I	CCWWGG	1 cut(s)	660
ErhI	CCWWGG	1 cut(s)	660
FaeI	CATG	5 cut(s)	172, 227, 397, 467, 521
FatI	CATG	5 cut(s)	168, 223, 393, 463, 517
FauI	CCCGC	1 cut(s)	483
FauNDI	CATATG	1 cut(s)	715
FbaI	TGATCA	1 cut(s)	406
Fnu4HI	GCNGC	3 cut(s)	557, 657, 666
FokI	GGATG	2 cut(s)	40, 110
Fsp4HI	GCNGC	3 cut(s)	557, 657, 666
FspBI	CTAG	2 cut(s)	189, 495
GluI	GCNGC	3 cut(s)	557, 657, 666
GsuI	CTGGAG	1 cut(s)	546
HaeIII	GGCC	2 cut(s)	505, 643
HapII	CCGG	1 cut(s)	80
Hin1II	CATG	5 cut(s)	172, 227, 397, 467, 521
HinfI	GANTC	1 cut(s)	611
HpaII	CCGG	1 cut(s)	80
Hpy188I	TCNGA	5 cut(s)	110, 235, 244, 411, 733
Hpy188III	TCNNGA	5 cut(s)	169, 206, 272, 563, 592
HpyAV	CCTTC	2 cut(s)	377, 516
HpyCH4III	ACNGT	2 cut(s)	364, 618
HpyCH4V	TGCA	4 cut(s)	64, 480, 719, 725
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 220, 662, 665
HpyF3I	CTNAG	4 cut(s)	199, 500, 669, 703
Hsp92II	CATG	5 cut(s)	172, 227, 397, 467, 521
Ksp22I	TGATCA	1 cut(s)	406
Kzo9I	GATC	1 cut(s)	406
LmnI	GCTCC	3 cut(s)	208, 220, 553
LpnPI	CCDG	6 cut(s)	93, 219, 313, 576, 625, 657
Lsp1109I	GCAGC	2 cut(s)	568, 677
MaeI	CTAG	2 cut(s)	189, 495
MaeIII	GTNAC	1 cut(s)	618
MalI	GATC	1 cut(s)	408
MbiI	CCGCTC	1 cut(s)	490
MboI	GATC	1 cut(s)	406
MboII	GAAGA	4 cut(s)	162, 303, 617, 620
MfeI	CAATTG	1 cut(s)	114
MhlI	GDGCHC	1 cut(s)	188
MluCI	AATT	4 cut(s)	103, 114, 228, 446
MmeI	TCCRAC	1 cut(s)	13
MnlI	CCTC	5 cut(s)	185, 278, 422, 570, 712
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	41, 75
MslI	CAYNNNNRTG	2 cut(s)	69, 714
MspI	CCGG	1 cut(s)	80
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	4 cut(s)	119, 220, 662, 665
NdeI	CATATG	1 cut(s)	715
NdeII	GATC	1 cut(s)	406
NlaIII	CATG	5 cut(s)	172, 227, 397, 467, 521
NmuCI	GTSAC	1 cut(s)	618
PagI	TCATGA	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	505
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	611
PkrI	GCNGC	3 cut(s)	558, 658, 667
RsaI	GTAC	2 cut(s)	197, 319
RsaNI	GTAC	2 cut(s)	196, 318
RseI	CAYNNNNRTG	2 cut(s)	69, 714
SaqAI	TTAA	2 cut(s)	41, 75
SatI	GCNGC	3 cut(s)	557, 657, 666
Sau3AI	GATC	1 cut(s)	406
SduI	GDGCHC	1 cut(s)	188
SetI	ASST	8 cut(s)	69, 205, 257, 305, 332, 388, 393, 670
SmiMI	CAYNNNNRTG	2 cut(s)	69, 714
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	103, 114, 228, 446
SseBI	AGGCCT	1 cut(s)	505
SsiI	CCGC	3 cut(s)	122, 490, 657
SspI	AATATT	1 cut(s)	88
SspMI	CTAG	2 cut(s)	189, 495
StuI	AGGCCT	1 cut(s)	505
StyI	CCWWGG	1 cut(s)	660
TaaI	ACNGT	2 cut(s)	364, 618
TaqI	TCGA	1 cut(s)	309
TasI	AATT	4 cut(s)	103, 114, 228, 446
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	1 cut(s)	611
Tru1I	TTAA	2 cut(s)	41, 75
Tru9I	TTAA	2 cut(s)	41, 75
TseFI	GTSAC	1 cut(s)	618
TseI	GCWGC	2 cut(s)	556, 665
Tsp45I	GTSAC	1 cut(s)	618
TspDTI	ATGAA	4 cut(s)	452, 453, 618, 705
XapI	RAATTY	2 cut(s)	103, 228
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	2 cut(s)	189, 495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.