Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016643

Physical Location & Seq

Genomic Coordinates Reverse (-)

3492396 .. 3493861

Gene Structure 1466 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46455

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1380 bp

ATGGAGGACAAGAAAGCAAACATAATAGCTGCTTCATCAGTCATCACCCTAATCATCTTCATCATCGTTGCTCGCGTGTGTCTCAAGCTTTCTAGTACTTTCTTTCTCATTTGTGGTGCAGGAATTGCTGTGATCATTGCTGTGTTTGCATGGCTCTTAATCCGACATCACTACAATTACAGGAGAAAACAAATGGAATCGCAGTACAAATCCGAAGGCCGTGAGCTAAGGATAGAGTACAGCTTCCTCCGAAAAGTAGCTGGAGTTCCCACCAAGTTCAGGTACAATGAGCTAGAAGAAGCCACAGACAACTTCCAGGCATTGCTTGGCCAAGGGGCTTCTGCGAAAGTGTTCAAAGGGATTCTCAGTGATGGCACTCCTGTTGCAGTAAAAAGGCTTGATGTGGAGGAGCGCGGCGACAGGGAATTTAGATCAGAAGTTTCTGCAATAGCTAGTCTACAACATGTGAATCTTGTGAGGCTTCTTGGATATTGCTGTGTTAATCCAGCAGGGCCTCGGTTCCTTGTGTATGACTTCATCTCAAATGGCTCTTTGGATAGTTGGATTTTCAATAGGAAGGTAAGGCCTAATCCCCGCGGAGGGTGCTTGTCTTGGGATTTAAGGTACAGGGTTGCTATTGATGTTGCCAAGGCACTTTCCTATTTGCATCATGATTGTAGGAAAAGGATTTTGCACCTTGATGTTAAGCCGGAAAATATTCTCTTGGATGAGAATTTCCGAGGAATTGTTGCGGATTTTGGTTTGTCAAAACTAATGGGAAGAGACGAGAGTAATGTCATGACAACAATAAGGGGCACTAGAGGGTACTTGGCTCCTGAATGGCTTTTGGAGCACGGAATTTCAGAGAAATCGGATACTTATAGCTATGGAATGGTGCTTCTTGAGATGATTGGAGGTAGAAGAAATGTGAGCTTCATCGAAAAGGGTACTCATGGCAAGTCTCATAGGAAATGGCAATACTTTCCCAAAACCGTGAATGAGAAAATGAGAGAAGGCAAGCTCATGGAGATTGTCGATCAGAGACTATTAGATAGTGGAGGCATTGATGAGAGGGAATTGAAAAGGCTTGTTCATGTAGCCATTTGGTGCATACAAGAGAGGGCTAGTCTTAGGCCTTCAATGTCTCATGTGGTTGAAATGCTTGAAGGGGGTTTGGTTGTGGAGCAGCCTCCTGATACCCAAATGACCATTGTTGATTTCTTGACAGTAGATGAAGAAGAGTCCCAGCCACAGATCAATGGTCATCACAGGCCAGACATTGCTGCTGCCTTGGCAGCTCGTCAAGTAGATAGCAATAATGAAAACTTATCCGCAGCTTACTCATATGCAAATGCAATGTCTGCCATAACACCAAGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

Pkinase

Protein Analysis

459

Amino Acids

51.96

Weight (kDa)

8.54

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	105 - 387	5e-35	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	107 - 386	2.9e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016643)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20050
fragaria_vesca	FvH4_1g03860
malus_domestica	MD02G1037000.v1.1 MD15G1177100.v1.1
prunus_persica	Prupe.7G238400_v2.0.a1 Prupe.7G238400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr2g0089251
rosa_laevigata	RLG00000016008
rosa_multiflora	Rmu_sc0008322.1_g000020
rosa_rugosa	Rorug01G0488600
rosa_samantha	Rh2AG044600 Rh2BG043300 Rh2DG043600
rosa_wichuraiana	Rw2G003860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	457
AccII	CGCG	3 cut(s)	75, 414, 597
AciI	CCGC	5 cut(s)	414, 595, 597, 752, 1332
AcoI	YGGCCR	1 cut(s)	328
AcsI	RAATTY	3 cut(s)	425, 733, 858
AfaI	GTAC	7 cut(s)	97, 206, 239, 284, 626, 827, 949
AfiI	CCNNNNNNNGG	3 cut(s)	279, 599, 600
AflIII	ACRYGT	1 cut(s)	463
AgsI	TTSAA	6 cut(s)	355, 571, 1081, 1140, 1157, 1166
AjnI	CCWGG	1 cut(s)	315
Alw21I	GWGCWC	1 cut(s)	855
Alw26I	GTCTC	5 cut(s)	86, 777, 966, 1036, 1149
AoxI	GGCC	6 cut(s)	217, 328, 512, 584, 1133, 1271
ApeKI	GCWGC	6 cut(s)	29, 1186, 1283, 1286, 1295, 1334
ApoI	RAATTY	3 cut(s)	425, 733, 858
ArsI	GACNNNNNNTTYG	2 cut(s)	1343, 1375
Asp700I	GAANNNNTTC	2 cut(s)	350, 717
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	1 cut(s)	512
AsuHPI	GGTGA	1 cut(s)	37
BaeGI	GKGCMC	1 cut(s)	818
BalI	TGGCCA	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	855
BbvI	GCAGC	6 cut(s)	16, 1198, 1270, 1273, 1307, 1346
BccI	CCATC	1 cut(s)	365
BceAI	ACGGC	1 cut(s)	204
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	868
BclI	TGATCA	1 cut(s)	132
BcoDI	GTCTC	5 cut(s)	86, 777, 966, 1036, 1149
BfaI	CTAG	5 cut(s)	93, 293, 453, 819, 1125
BfuI	GTATCC	1 cut(s)	868
BisI	GCNGC	7 cut(s)	30, 415, 1187, 1284, 1287, 1296, 1335
BlsI	GCNGC	7 cut(s)	31, 416, 1188, 1285, 1288, 1297, 1336
BmcAI	AGTACT	1 cut(s)	97
Bme1390I	CCNGG	1 cut(s)	317
BmgT120I	GGNCC	1 cut(s)	512
BmiI	GGNNCC	2 cut(s)	521, 834
BmrFI	CCNGG	1 cut(s)	317
BmsI	GCATC	1 cut(s)	676
BpmI	CTGGAG	1 cut(s)	282
Bpu10I	CCTNAGC	1 cut(s)	227
BpuEI	CTTGAG	2 cut(s)	68, 923
BsaJI	CCNNGG	6 cut(s)	331, 515, 595, 648, 739, 1290
Bsc4I	CCNNNNNNNGG	3 cut(s)	279, 599, 600
Bse3DI	GCAATG	4 cut(s)	135, 320, 1278, 1362
BseBI	CCWGG	1 cut(s)	317
BseDI	CCNNGG	6 cut(s)	331, 515, 595, 648, 739, 1290
BseGI	GGATG	1 cut(s)	733
BseLI	CCNNNNNNNGG	3 cut(s)	279, 599, 600
BseMI	GCAATG	4 cut(s)	135, 320, 1278, 1362
BseMII	CTCAG	1 cut(s)	379
BseRI	GAGGAG	1 cut(s)	422
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	6 cut(s)	16, 1198, 1270, 1273, 1307, 1346
BseYI	CCCAGC	1 cut(s)	1245
BsgI	GTGCAG	1 cut(s)	138
Bsh1236I	CGCG	3 cut(s)	75, 414, 597
BshFI	GGCC	6 cut(s)	219, 330, 514, 586, 1135, 1273
BsiHKAI	GWGCWC	1 cut(s)	855
BsiSI	CCGG	1 cut(s)	710
BslFI	GGGAC	1 cut(s)	1228
BslI	CCNNNNNNNGG	3 cut(s)	279, 599, 600
BsmAI	GTCTC	5 cut(s)	86, 777, 966, 1036, 1149
BsmBI	CGTCTC	1 cut(s)	777
BsmFI	GGGAC	1 cut(s)	1228
BsnI	GGCC	6 cut(s)	219, 330, 514, 586, 1135, 1273
Bsp1286I	GDGCHC	2 cut(s)	818, 855
Bsp143I	GATC	4 cut(s)	132, 431, 1036, 1254
BspACI	CCGC	5 cut(s)	414, 595, 597, 752, 1332
BspANI	GGCC	6 cut(s)	219, 330, 514, 586, 1135, 1273
BspCNI	CTCAG	1 cut(s)	378
BspFNI	CGCG	3 cut(s)	75, 414, 597
BspHI	TCATGA	2 cut(s)	670, 798
BspLI	GGNNCC	2 cut(s)	521, 834
BsrDI	GCAATG	4 cut(s)	135, 320, 1278, 1362
BssECI	CCNNGG	6 cut(s)	331, 515, 595, 648, 739, 1290
BssMI	GATC	4 cut(s)	132, 431, 1036, 1254
BssT1I	CCWWGG	3 cut(s)	331, 648, 1290
Bst2UI	CCWGG	1 cut(s)	317
Bst4CI	ACNGT	2 cut(s)	994, 1228
Bst6I	CTCTTC	2 cut(s)	775, 1233
BstAPI	GCANNNNNTGC	2 cut(s)	125, 1361
BstC8I	GCNNGC	2 cut(s)	73, 1019
BstDEI	CTNAG	3 cut(s)	227, 365, 1130
BstDSI	CCRYGG	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	733
BstFNI	CGCG	3 cut(s)	75, 414, 597
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	4 cut(s)	135, 434, 1039, 1257
BstMAI	GTCTC	5 cut(s)	86, 777, 966, 1036, 1149
BstMBI	GATC	4 cut(s)	132, 431, 1036, 1254
BstMWI	GCNNNNNNNGC	7 cut(s)	125, 146, 603, 850, 1292, 1295, 1361
BstNI	CCWGG	1 cut(s)	317
BstNSI	RCATGY	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	818
BstUI	CGCG	3 cut(s)	75, 414, 597
BstV1I	GCAGC	6 cut(s)	16, 1198, 1270, 1273, 1307, 1346
BsuI	GTATCC	1 cut(s)	868
BsuRI	GGCC	6 cut(s)	219, 330, 514, 586, 1135, 1273
BtgI	CCRYGG	1 cut(s)	595
BtsCI	GGATG	1 cut(s)	733
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	73, 1019
CciI	TCATGA	2 cut(s)	670, 798
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	1 cut(s)	512
Cfr42I	CCGCGG	1 cut(s)	598
Csp6I	GTAC	7 cut(s)	96, 205, 238, 283, 625, 826, 948
CviAII	CATG	8 cut(s)	150, 464, 671, 799, 953, 1024, 1094, 1148
CviQI	GTAC	7 cut(s)	96, 205, 238, 283, 625, 826, 948
DdeI	CTNAG	3 cut(s)	227, 365, 1130
DpnI	GATC	4 cut(s)	134, 433, 1038, 1256
DpnII	GATC	4 cut(s)	132, 431, 1036, 1254
EaeI	YGGCCR	1 cut(s)	328
Eam1104I	CTCTTC	2 cut(s)	775, 1233
EarI	CTCTTC	2 cut(s)	775, 1233
Eco130I	CCWWGG	3 cut(s)	331, 648, 1290
Eco147I	AGGCCT	2 cut(s)	586, 1135
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	315
EcoT14I	CCWWGG	3 cut(s)	331, 648, 1290
ErhI	CCWWGG	3 cut(s)	331, 648, 1290
Esp3I	CGTCTC	1 cut(s)	777
FaeI	CATG	8 cut(s)	153, 467, 674, 802, 956, 1027, 1097, 1151
FaqI	GGGAC	1 cut(s)	1228
FatI	CATG	8 cut(s)	149, 463, 670, 798, 952, 1023, 1093, 1147
FauI	CCCGC	1 cut(s)	602
FauNDI	CATATG	1 cut(s)	1345
FbaI	TGATCA	1 cut(s)	132
FblI	GTMKAC	1 cut(s)	457
Fnu4HI	GCNGC	7 cut(s)	30, 415, 1187, 1284, 1287, 1296, 1335
FokI	GGATG	1 cut(s)	740
Fsp4HI	GCNGC	7 cut(s)	30, 415, 1187, 1284, 1287, 1296, 1335
FspBI	CTAG	5 cut(s)	93, 293, 453, 819, 1125
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	7 cut(s)	30, 415, 1187, 1284, 1287, 1296, 1335
GsaI	CCCAGC	1 cut(s)	1249
GsuI	CTGGAG	1 cut(s)	282
HaeIII	GGCC	6 cut(s)	219, 330, 514, 586, 1135, 1273
HapII	CCGG	1 cut(s)	710
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	8 cut(s)	153, 467, 674, 802, 956, 1027, 1097, 1151
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HindIII	AAGCTT	1 cut(s)	86
HinfI	GANTC	4 cut(s)	197, 361, 469, 1241
HpaII	CCGG	1 cut(s)	710
HphI	GGTGA	1 cut(s)	37
Hpy166II	GTNNAC	1 cut(s)	458
Hpy188I	TCNGA	8 cut(s)	164, 214, 251, 436, 740, 865, 874, 1041
Hpy188III	TCNNGA	6 cut(s)	671, 799, 836, 902, 1193, 1222
Hpy8I	GTNNAC	1 cut(s)	458
HpyAV	CCTTC	5 cut(s)	209, 571, 1007, 1146, 1160
HpyCH4III	ACNGT	2 cut(s)	994, 1228
HpyCH4V	TGCA	9 cut(s)	119, 149, 386, 446, 667, 694, 1110, 1349, 1355
HpyF10VI	GCNNNNNNNGC	7 cut(s)	125, 146, 603, 850, 1292, 1295, 1361
HpyF3I	CTNAG	3 cut(s)	227, 365, 1130
Hsp92II	CATG	8 cut(s)	153, 467, 674, 802, 956, 1027, 1097, 1151
HspAI	GCGC	1 cut(s)	412
Ksp22I	TGATCA	1 cut(s)	132
KspI	CCGCGG	1 cut(s)	598
Kzo9I	GATC	4 cut(s)	132, 431, 1036, 1254
LmnI	GCTCC	4 cut(s)	409, 838, 850, 1183
Lsp1109I	GCAGC	6 cut(s)	16, 1198, 1270, 1273, 1307, 1346
LweI	GCATC	1 cut(s)	676
MaeI	CTAG	5 cut(s)	93, 293, 453, 819, 1125
MalI	GATC	4 cut(s)	134, 433, 1038, 1256
MboI	GATC	4 cut(s)	132, 431, 1036, 1254
MboII	GAAGA	6 cut(s)	49, 308, 792, 933, 1247, 1250
MhlI	GDGCHC	2 cut(s)	818, 855
MlsI	TGGCCA	1 cut(s)	330
MluCI	AATT	7 cut(s)	123, 175, 425, 733, 744, 858, 1076
MluNI	TGGCCA	1 cut(s)	330
MlyI	GAGTC	1 cut(s)	1250
MmeI	TCCRAC	2 cut(s)	187, 542
Mox20I	TGGCCA	1 cut(s)	330
MroXI	GAANNNNTTC	2 cut(s)	350, 717
MscI	TGGCCA	1 cut(s)	330
MseI	TTAA	4 cut(s)	158, 501, 620, 705
MslI	CAYNNNNRTG	2 cut(s)	140, 699
Msp20I	TGGCCA	1 cut(s)	330
MspA1I	CMGCKG	1 cut(s)	597
MspI	CCGG	1 cut(s)	710
MspR9I	CCNGG	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	3 cut(s)	75, 414, 597
MwoI	GCNNNNNNNGC	7 cut(s)	125, 146, 603, 850, 1292, 1295, 1361
NdeI	CATATG	1 cut(s)	1345
NdeII	GATC	4 cut(s)	132, 431, 1036, 1254
NlaIII	CATG	8 cut(s)	153, 467, 674, 802, 956, 1027, 1097, 1151
NlaIV	GGNNCC	2 cut(s)	521, 834
NspI	RCATGY	1 cut(s)	467
PagI	TCATGA	2 cut(s)	670, 798
PceI	AGGCCT	2 cut(s)	586, 1135
PciI	ACATGT	1 cut(s)	463
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdmI	GAANNNNTTC	2 cut(s)	350, 717
PfeI	GAWTC	3 cut(s)	197, 361, 469
PkrI	GCNGC	7 cut(s)	31, 416, 1188, 1285, 1288, 1297, 1336
PleI	GAGTC	1 cut(s)	1249
PpsI	GAGTC	1 cut(s)	1249
PscI	ACATGT	1 cut(s)	463
Psp6I	CCWGG	1 cut(s)	315
PspFI	CCCAGC	1 cut(s)	1245
PspGI	CCWGG	1 cut(s)	315
PspN4I	GGNNCC	2 cut(s)	521, 834
PspPI	GGNCC	1 cut(s)	512
PsrI	GAACNNNNNNTAC	2 cut(s)	249, 281
RsaI	GTAC	7 cut(s)	97, 206, 239, 284, 626, 827, 949
RsaNI	GTAC	7 cut(s)	96, 205, 238, 283, 625, 826, 948
RseI	CAYNNNNRTG	2 cut(s)	140, 699
SacII	CCGCGG	1 cut(s)	598
SaqAI	TTAA	4 cut(s)	158, 501, 620, 705
SatI	GCNGC	7 cut(s)	30, 415, 1187, 1284, 1287, 1296, 1335
Sau3AI	GATC	4 cut(s)	132, 431, 1036, 1254
Sau96I	GGNCC	1 cut(s)	512
ScaI	AGTACT	1 cut(s)	97
SchI	GAGTC	1 cut(s)	1250
ScrFI	CCNGG	1 cut(s)	317
SduI	GDGCHC	2 cut(s)	818, 855
SfaNI	GCATC	1 cut(s)	676
Sfr303I	CCGCGG	1 cut(s)	598
SgrBI	CCGCGG	1 cut(s)	598
SmiMI	CAYNNNNRTG	2 cut(s)	140, 699
SmlI	CTYRAG	2 cut(s)	83, 902
SmoI	CTYRAG	2 cut(s)	83, 902
Sse9I	AATT	7 cut(s)	123, 175, 425, 733, 744, 858, 1076
SseBI	AGGCCT	2 cut(s)	586, 1135
SsiI	CCGC	5 cut(s)	414, 595, 597, 752, 1332
SspI	AATATT	1 cut(s)	718
SspMI	CTAG	5 cut(s)	93, 293, 453, 819, 1125
StuI	AGGCCT	2 cut(s)	586, 1135
StyD4I	CCNGG	1 cut(s)	315
StyI	CCWWGG	3 cut(s)	331, 648, 1290
TaaI	ACNGT	2 cut(s)	994, 1228
TaqI	TCGA	2 cut(s)	939, 1035
TasI	AATT	7 cut(s)	123, 175, 425, 733, 744, 858, 1076
TatI	WGTACW	3 cut(s)	95, 204, 237
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	197, 361, 469
Tru1I	TTAA	4 cut(s)	158, 501, 620, 705
Tru9I	TTAA	4 cut(s)	158, 501, 620, 705
TscAI	CASTG	1 cut(s)	373
TseI	GCWGC	6 cut(s)	29, 1186, 1283, 1286, 1295, 1334
TspDTI	ATGAA	7 cut(s)	24, 49, 526, 925, 1082, 1248, 1335
TspGWI	ACGGA	1 cut(s)	870
TspRI	CASTG	1 cut(s)	373
XapI	RAATTY	3 cut(s)	425, 733, 858
XceI	RCATGY	1 cut(s)	467
XcmI	CCANNNNNNNNNTGG	1 cut(s)	323
XmiI	GTMKAC	1 cut(s)	457
XmnI	GAANNNNTTC	2 cut(s)	350, 717
XspI	CTAG	5 cut(s)	93, 293, 453, 819, 1125
ZrmI	AGTACT	1 cut(s)	97

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.