Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008050

Physical Location & Seq

Genomic Coordinates Reverse (-)

6786834 .. 6788680

Gene Structure 1847 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G20090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGCTACATCAAGGTTCCAAGCATTCTTGAACAGTCCCATTGGCCCAAAAACAACTCATTTCTGGGGGCCTATCGCTAATTGGGGTTTTGTTGCTGCTGGTTTGGTGGATATGCAAAAGCCCCCTGAAATGATTTCTGGAAACATGTCGTCAGCTATGTGCGTTTACTCTGCATTGTTCATGAGGTTTGCCTGGATGGTGCAACCACGTAACTATTTGCTACTTGCGTGCCATGCATCAAACGAGACTGTACAACTCTATCAGCTCTCACGTTGGGCTAGAGCCCAGGGGTATTTATCCTCCAAGAAAGAAGAGGAGAAACCATCTCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006848 GO:0006850 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0010119 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1901475 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

110

Amino Acids

12.44

Weight (kDa)

9.34

Isoelectric Point (pI)

43.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	6 - 105	3.6e-36	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20090 AT5G20090 AT5G20090 AT5G20090
fragaria_vesca	FvH4_5g07810
malus_domestica	MD06G1147100.v1.1 MD14G1161000.v1.1
prunus_persica	Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1
pyrus_communis	pycom06g13670
rosa_chinensis	RchiOBHm_Chr7g0190651
rosa_laevigata	RLG00000004506
rosa_multiflora	Rmu_sc0006709.1_g000006 Rmu_sc0014053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264430
rosa_rugosa	Rorug06G0506100
rosa_samantha	Rh7AG112700 Rh7BG115200 Rh7CG117700 Rh7DG116600
rosa_wichuraiana	Rw7G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	252
AflIII	ACRYGT	1 cut(s)	144
AgsI	TTSAA	1 cut(s)	31
AjnI	CCWGG	2 cut(s)	191, 285
AluBI	AGCT	2 cut(s)	155, 265
AluI	AGCT	2 cut(s)	155, 265
Alw26I	GTCTC	1 cut(s)	239
AoxI	GGCC	2 cut(s)	43, 68
ApeKI	GCWGC	1 cut(s)	95
AspS9I	GGNCC	2 cut(s)	44, 68
BanII	GRGCYC	1 cut(s)	286
BbvI	GCAGC	1 cut(s)	82
BccI	CCATC	2 cut(s)	190, 331
BciT130I	CCWGG	2 cut(s)	193, 287
BcoDI	GTCTC	1 cut(s)	239
BfaI	CTAG	1 cut(s)	279
BisI	GCNGC	1 cut(s)	96
BlsI	GCNGC	1 cut(s)	97
Bme1390I	CCNGG	2 cut(s)	193, 287
BmgT120I	GGNCC	2 cut(s)	44, 68
BmiI	GGNNCC	2 cut(s)	17, 69
BmrFI	CCNGG	2 cut(s)	193, 287
BmsI	GCATC	1 cut(s)	245
BsaAI	YACGTR	1 cut(s)	209
BsaJI	CCNNGG	2 cut(s)	285, 286
BseBI	CCWGG	2 cut(s)	193, 287
BseDI	CCNNGG	2 cut(s)	285, 286
BseGI	GGATG	1 cut(s)	201
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	1 cut(s)	82
BshFI	GGCC	2 cut(s)	45, 70
BslFI	GGGAC	1 cut(s)	21
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	23
BsnI	GGCC	2 cut(s)	45, 70
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp1407I	TGTACA	1 cut(s)	250
BspANI	GGCC	2 cut(s)	45, 70
BspHI	TCATGA	1 cut(s)	180
BspLI	GGNNCC	2 cut(s)	17, 69
BsrGI	TGTACA	1 cut(s)	250
BssECI	CCNNGG	2 cut(s)	285, 286
Bst2UI	CCWGG	2 cut(s)	193, 287
Bst4CI	ACNGT	2 cut(s)	35, 250
Bst6I	CTCTTC	1 cut(s)	306
BstAUI	TGTACA	1 cut(s)	250
BstBAI	YACGTR	1 cut(s)	209
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	201
BstMAI	GTCTC	1 cut(s)	239
BstMWI	GCNNNNNNNGC	1 cut(s)	233
BstNI	CCWGG	2 cut(s)	193, 287
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	191, 285
BstV1I	GCAGC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	45, 70
BtsCI	GGATG	1 cut(s)	201
Cac8I	GCNNGC	1 cut(s)	229
CciI	TCATGA	1 cut(s)	180
Cfr13I	GGNCC	2 cut(s)	44, 68
Csp6I	GTAC	1 cut(s)	251
CviAII	CATG	3 cut(s)	145, 181, 233
CviJI	RGCY	8 cut(s)	5, 45, 70, 121, 155, 265, 278, 284
CviKI_1	RGCY	8 cut(s)	5, 45, 70, 121, 155, 265, 278, 284
CviQI	GTAC	1 cut(s)	251
DdeI	CTNAG	1 cut(s)	327
Eam1104I	CTCTTC	1 cut(s)	306
EarI	CTCTTC	1 cut(s)	306
Eco24I	GRGCYC	1 cut(s)	286
EcoO109I	RGGNCCY	1 cut(s)	68
EcoRII	CCWGG	2 cut(s)	191, 285
EcoT22I	ATGCAT	1 cut(s)	238
EcoT38I	GRGCYC	1 cut(s)	286
FaeI	CATG	3 cut(s)	148, 184, 236
FaiI	YATR	5 cut(s)	113, 146, 158, 182, 234
FaqI	GGGAC	1 cut(s)	21
FatI	CATG	3 cut(s)	144, 180, 232
Fnu4HI	GCNGC	1 cut(s)	96
FokI	GGATG	1 cut(s)	208
FriOI	GRGCYC	1 cut(s)	286
Fsp4HI	GCNGC	1 cut(s)	96
FspBI	CTAG	1 cut(s)	279
GluI	GCNGC	1 cut(s)	96
HaeIII	GGCC	2 cut(s)	45, 70
Hin1II	CATG	3 cut(s)	148, 184, 236
Hpy166II	GTNNAC	1 cut(s)	166
Hpy188III	TCNNGA	3 cut(s)	28, 138, 181
Hpy8I	GTNNAC	1 cut(s)	166
HpyCH4III	ACNGT	2 cut(s)	35, 250
HpyCH4IV	ACGT	2 cut(s)	208, 271
HpyCH4V	TGCA	4 cut(s)	115, 173, 202, 236
HpyF10VI	GCNNNNNNNGC	1 cut(s)	233
HpyF3I	CTNAG	1 cut(s)	327
HpySE526I	ACGT	2 cut(s)	208, 271
Hsp92II	CATG	3 cut(s)	148, 184, 236
LpnPI	CCDG	8 cut(s)	49, 84, 123, 138, 178, 205, 272, 299
Lsp1109I	GCAGC	1 cut(s)	82
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	2 cut(s)	208, 271
MaeIII	GTNAC	1 cut(s)	209
MboII	GAAGA	1 cut(s)	323
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	1 cut(s)	79
MnlI	CCTC	3 cut(s)	177, 307, 310
Mph1103I	ATGCAT	1 cut(s)	238
MspR9I	CCNGG	2 cut(s)	193, 287
Mva1269I	GAATGC	1 cut(s)	23
MvaI	CCWGG	2 cut(s)	193, 287
MwoI	GCNNNNNNNGC	1 cut(s)	233
NlaIII	CATG	3 cut(s)	148, 184, 236
NlaIV	GGNNCC	2 cut(s)	17, 69
NsiI	ATGCAT	1 cut(s)	238
NspI	RCATGY	1 cut(s)	148
PagI	TCATGA	1 cut(s)	180
PasI	CCCWGGG	1 cut(s)	286
PciI	ACATGT	1 cut(s)	144
PctI	GAATGC	1 cut(s)	23
PkrI	GCNGC	1 cut(s)	97
Ppu21I	YACGTR	1 cut(s)	209
PscI	ACATGT	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	191, 285
PspGI	CCWGG	2 cut(s)	191, 285
PspN4I	GGNNCC	2 cut(s)	17, 69
PspPI	GGNCC	2 cut(s)	44, 68
RsaI	GTAC	1 cut(s)	252
RsaNI	GTAC	1 cut(s)	251
SatI	GCNGC	1 cut(s)	96
Sau96I	GGNCC	2 cut(s)	44, 68
ScrFI	CCNGG	2 cut(s)	193, 287
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	6 cut(s)	17, 157, 188, 211, 267, 274
SfaNI	GCATC	1 cut(s)	245
Sse9I	AATT	1 cut(s)	79
SspMI	CTAG	1 cut(s)	279
StyD4I	CCNGG	2 cut(s)	191, 285
TaaI	ACNGT	2 cut(s)	35, 250
TaiI	ACGT	2 cut(s)	211, 274
TasI	AATT	1 cut(s)	79
TatI	WGTACW	1 cut(s)	250
TseI	GCWGC	1 cut(s)	95
TspDTI	ATGAA	1 cut(s)	169
XceI	RCATGY	1 cut(s)	148
XspI	CTAG	1 cut(s)	279
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.