Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008050

Physical Location & Seq

Genomic Coordinates Forward (+)

47431868 .. 47434100

Gene Structure 2233 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G584200.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCATCATTCCGAGCATTCTTGAACAGTCCAGTTGGTCCAAAAACAACTCACTTTTGGGGACCTATTGCAAACTGGGGATTCGTTGCCGCGGGATTGGCGGATATGAACAAACCTCCAGAAATGATTTCTGGCAACATGACAGCAGCAATGTGCGTTTATTCTGCATTGTTTATGAGATTCGCATGGATGGTGCAGCCTCGCAATTATCTACTTTTGGCATGCCATGTCTCAAATGAGACTGTCCAACTCTATCAACTCTCTCGCTGGGCAAGGGGTCAGGGGTACTTTCCCCAGAAGAAGGATGAACCTGCGTCCGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006848 GO:0006850 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0010119 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1901475 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

108

Amino Acids

12.05

Weight (kDa)

9.1

Isoelectric Point (pI)

38.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20090 AT5G20090 AT5G20090 AT5G20090
fragaria_vesca	FvH4_5g07810
malus_domestica	MD06G1147100.v1.1 MD14G1161000.v1.1
prunus_persica	Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1
pyrus_communis	pycom06g13670
rosa_chinensis	RchiOBHm_Chr7g0190651
rosa_laevigata	RLG00000004506
rosa_multiflora	Rmu_sc0006709.1_g000006 Rmu_sc0014053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264430
rosa_rugosa	Rorug06G0506100
rosa_samantha	Rh7AG112700 Rh7BG115200 Rh7CG117700 Rh7DG116600
rosa_wichuraiana	Rw7G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccII	CGCG	1 cut(s)	92
AciI	CCGC	3 cut(s)	90, 92, 101
AfaI	GTAC	1 cut(s)	287
AfiI	CCNNNNNNNGG	1 cut(s)	301
AgsI	TTSAA	1 cut(s)	25
Alw26I	GTCTC	2 cut(s)	233, 235
ApeKI	GCWGC	2 cut(s)	146, 196
AspS9I	GGNCC	2 cut(s)	38, 62
AvaII	GGWCC	2 cut(s)	38, 62
BbvI	GCAGC	2 cut(s)	158, 208
BccI	CCATC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	233, 235
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	3 cut(s)	90, 147, 197
BlsI	GCNGC	3 cut(s)	91, 148, 198
Bme18I	GGWCC	2 cut(s)	38, 62
BmgT120I	GGNCC	2 cut(s)	38, 62
BmiI	GGNNCC	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	85
BmsI	GCATC	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	90
Bsc4I	CCNNNNNNNGG	1 cut(s)	301
Bse1I	ACTGG	2 cut(s)	32, 80
Bse3DI	GCAATG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	90
BseGI	GGATG	2 cut(s)	195, 310
BseLI	CCNNNNNNNGG	1 cut(s)	301
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	32, 80
BseXI	GCAGC	2 cut(s)	158, 208
BseYI	CCCAGC	1 cut(s)	267
BsgI	GTGCAG	1 cut(s)	215
Bsh1236I	CGCG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	301
BsmAI	GTCTC	2 cut(s)	233, 235
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	17
BspACI	CCGC	3 cut(s)	90, 92, 101
BspFNI	CGCG	1 cut(s)	92
BspLI	GGNNCC	1 cut(s)	63
BspMI	ACCTGC	1 cut(s)	319
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	32, 80
BssECI	CCNNGG	1 cut(s)	90
Bst4CI	ACNGT	2 cut(s)	29, 244
BstC8I	GCNNGC	1 cut(s)	223
BstDSI	CCRYGG	1 cut(s)	90
BstF5I	GGATG	2 cut(s)	195, 310
BstFNI	CGCG	1 cut(s)	92
BstMAI	GTCTC	2 cut(s)	233, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	225
BstUI	CGCG	1 cut(s)	92
BstV1I	GCAGC	2 cut(s)	158, 208
BtgI	CCRYGG	1 cut(s)	90
BtsCI	GGATG	2 cut(s)	195, 310
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	38, 62
Cfr42I	CCGCGG	1 cut(s)	93
CseI	GACGC	1 cut(s)	303
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	4 cut(s)	139, 186, 222, 227
CviJI	RGCY	1 cut(s)	199
CviKI_1	RGCY	1 cut(s)	199
CviQI	GTAC	1 cut(s)	286
EciI	GGCGGA	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	38, 62
EcoO109I	RGGNCCY	1 cut(s)	62
FaeI	CATG	4 cut(s)	142, 189, 225, 230
FaiI	YATR	6 cut(s)	107, 140, 176, 187, 223, 228
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	4 cut(s)	138, 185, 221, 226
FauI	CCCGC	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	90, 147, 197
FokI	GGATG	2 cut(s)	202, 317
Fsp4HI	GCNGC	3 cut(s)	90, 147, 197
GluI	GCNGC	3 cut(s)	90, 147, 197
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	303
Hin1II	CATG	4 cut(s)	142, 189, 225, 230
HinfI	GANTC	2 cut(s)	81, 180
Hpy188I	TCNGA	2 cut(s)	14, 319
Hpy188III	TCNNGA	2 cut(s)	22, 119
HpyAV	CCTTC	1 cut(s)	295
HpyCH4III	ACNGT	2 cut(s)	29, 244
HpyCH4V	TGCA	3 cut(s)	71, 167, 196
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	4 cut(s)	142, 189, 225, 230
KspI	CCGCGG	1 cut(s)	93
LpnPI	CCDG	7 cut(s)	45, 61, 117, 132, 253, 266, 308
Lsp1109I	GCAGC	2 cut(s)	158, 208
LweI	GCATC	1 cut(s)	14
MboII	GAAGA	1 cut(s)	310
MluCI	AATT	1 cut(s)	205
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	126, 210
MspA1I	CMGCKG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	17
MvnI	CGCG	1 cut(s)	92
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIII	CATG	4 cut(s)	142, 189, 225, 230
NlaIV	GGNNCC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	81, 180
PkrI	GCNGC	3 cut(s)	91, 148, 198
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	38, 62
PspPPI	RGGWCCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
SacII	CCGCGG	1 cut(s)	93
SatI	GCNGC	3 cut(s)	90, 147, 197
Sau96I	GGNCC	2 cut(s)	38, 62
SetI	ASST	3 cut(s)	67, 118, 313
SfaNI	GCATC	1 cut(s)	14
Sfr303I	CCGCGG	1 cut(s)	93
SgrBI	CCGCGG	1 cut(s)	93
SinI	GGWCC	2 cut(s)	38, 62
SphI	GCATGC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	205
SsiI	CCGC	3 cut(s)	90, 92, 101
TaaI	ACNGT	2 cut(s)	29, 244
TasI	AATT	1 cut(s)	205
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	81, 180
TseI	GCWGC	2 cut(s)	146, 196
TspDTI	ATGAA	2 cut(s)	122, 321
VpaK11BI	GGWCC	2 cut(s)	38, 62
XceI	RCATGY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.