Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0008050

Physical Location & Seq

Genomic Coordinates Forward (+)

28935993 .. 28937808

Gene Structure 1816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1147100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTTCATTCCGAGCATTCTTGAACAGTCCAGTTGGTCCGAAAACAACTCACTTTTGGGGACCTGTTGCAAACTGGGGATTCGTTGCCGCTGGATTGGCGGATATGAACAAACCTCCAGAAATGATTTCTGGCAATATGACAGCAGCAATGTGCGTTTATTCAGCGTTGTTTATGAGATTCGCATGGATGGTACAGCCTCGGAACTATCTGCTTTTGGCATGCCATGTCTCAAATGAGACTGTCCAACTCTATCAGCTCTCTCGCTGGGCGAGGGGTCAGGGGTACTTAGCCCCGAAGAAAGATGAAGCTGCAACCGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006848 GO:0006850 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0010119 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1901475 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

108

Amino Acids

11.93

Weight (kDa)

9.1

Isoelectric Point (pI)

34.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	4 - 94	4.9e-36	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20090 AT5G20090 AT5G20090 AT5G20090
fragaria_vesca	FvH4_5g07810
malus_domestica	MD06G1147100.v1.1 MD14G1161000.v1.1
prunus_persica	Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1
pyrus_communis	pycom06g13670
rosa_chinensis	RchiOBHm_Chr7g0190651
rosa_laevigata	RLG00000004506
rosa_multiflora	Rmu_sc0006709.1_g000006 Rmu_sc0014053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264430
rosa_rugosa	Rorug06G0506100
rosa_samantha	Rh7AG112700 Rh7BG115200 Rh7CG117700 Rh7DG116600
rosa_wichuraiana	Rw7G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	90, 101
AfaI	GTAC	2 cut(s)	195, 287
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	2 cut(s)	259, 311
AluI	AGCT	2 cut(s)	259, 311
Alw26I	GTCTC	2 cut(s)	233, 235
ApeKI	GCWGC	2 cut(s)	146, 311
AspS9I	GGNCC	2 cut(s)	38, 62
AvaII	GGWCC	2 cut(s)	38, 62
BbvI	GCAGC	2 cut(s)	158, 298
BccI	CCATC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	233, 235
BisI	GCNGC	3 cut(s)	90, 147, 312
BlsI	GCNGC	3 cut(s)	91, 148, 313
Bme18I	GGWCC	2 cut(s)	38, 62
BmgT120I	GGNCC	2 cut(s)	38, 62
BmiI	GGNNCC	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	85
BpmI	CTGGAG	1 cut(s)	102
BsaJI	CCNNGG	1 cut(s)	200
Bse1I	ACTGG	2 cut(s)	32, 80
Bse3DI	GCAATG	1 cut(s)	156
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	1 cut(s)	195
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	2 cut(s)	32, 80
BseXI	GCAGC	2 cut(s)	158, 298
BseYI	CCCAGC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	233, 235
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	17
BspACI	CCGC	2 cut(s)	90, 101
BspLI	GGNNCC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	2 cut(s)	32, 80
BssECI	CCNNGG	1 cut(s)	200
Bst4CI	ACNGT	2 cut(s)	29, 244
BstC8I	GCNNGC	1 cut(s)	223
BstDEI	CTNAG	1 cut(s)	289
BstF5I	GGATG	1 cut(s)	195
BstMAI	GTCTC	2 cut(s)	233, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstNSI	RCATGY	1 cut(s)	225
BstV1I	GCAGC	2 cut(s)	158, 298
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	38, 62
Csp6I	GTAC	2 cut(s)	194, 286
CviAII	CATG	3 cut(s)	186, 222, 227
CviJI	RGCY	5 cut(s)	5, 199, 259, 293, 311
CviKI_1	RGCY	5 cut(s)	5, 199, 259, 293, 311
CviQI	GTAC	2 cut(s)	194, 286
DdeI	CTNAG	1 cut(s)	289
EciI	GGCGGA	1 cut(s)	116
Eco47I	GGWCC	2 cut(s)	38, 62
EcoO109I	RGGNCCY	1 cut(s)	62
FaeI	CATG	3 cut(s)	189, 225, 230
FaiI	YATR	6 cut(s)	107, 140, 176, 187, 223, 228
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	3 cut(s)	185, 221, 226
Fnu4HI	GCNGC	3 cut(s)	90, 147, 312
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	90, 147, 312
GluI	GCNGC	3 cut(s)	90, 147, 312
GsaI	CCCAGC	1 cut(s)	271
GsuI	CTGGAG	1 cut(s)	102
Hin1II	CATG	3 cut(s)	189, 225, 230
HinfI	GANTC	2 cut(s)	81, 180
Hpy188I	TCNGA	3 cut(s)	14, 42, 204
Hpy188III	TCNNGA	2 cut(s)	22, 119
HpyCH4III	ACNGT	2 cut(s)	29, 244
HpyCH4V	TGCA	2 cut(s)	71, 314
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	289
Hsp92II	CATG	3 cut(s)	189, 225, 230
LpnPI	CCDG	8 cut(s)	45, 61, 78, 78, 117, 132, 253, 266
Lsp1109I	GCAGC	2 cut(s)	158, 298
MboII	GAAGA	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	3 cut(s)	126, 210, 267
MspA1I	CMGCKG	1 cut(s)	92
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	189, 225, 230
NlaIV	GGNNCC	1 cut(s)	63
NspI	RCATGY	1 cut(s)	225
PaeI	GCATGC	1 cut(s)	225
PctI	GAATGC	1 cut(s)	17
PfeI	GAWTC	2 cut(s)	81, 180
PkrI	GCNGC	3 cut(s)	91, 148, 313
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	38, 62
PspPPI	RGGWCCY	1 cut(s)	62
RsaI	GTAC	2 cut(s)	195, 287
RsaNI	GTAC	2 cut(s)	194, 286
SatI	GCNGC	3 cut(s)	90, 147, 312
Sau96I	GGNCC	2 cut(s)	38, 62
SetI	ASST	4 cut(s)	67, 118, 261, 313
SinI	GGWCC	2 cut(s)	38, 62
SphI	GCATGC	1 cut(s)	225
SsiI	CCGC	2 cut(s)	90, 101
TaaI	ACNGT	2 cut(s)	29, 244
TauI	GCSGC	1 cut(s)	92
TfiI	GAWTC	2 cut(s)	81, 180
TseI	GCWGC	2 cut(s)	146, 311
TspDTI	ATGAA	2 cut(s)	122, 321
VpaK11BI	GGWCC	2 cut(s)	38, 62
XceI	RCATGY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.