Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008050

Physical Location & Seq

Genomic Coordinates Forward (+)

25544565 .. 25546469

Gene Structure 1905 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1161000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 336 bp

ATGATTGTAAGAATGGCTTCGTTCCGAGCATTCTTGAACAGTCCAGTTGGTCCAAAAACAACTCACTTTTGGGGACCTGTTGCGAACTGGGGATTTGTTGCTGCTGGATTGGCGGATATGAACAAACCTCCAGAAATGATTTCTGGCAACATGACAGCAGCAATGTGCGTTTATTCAGCATTGTTTATGAGATTCGCATGGATGGTACAACCTCGCAACTATCTTCTTTTGGCATGCCATGTCTCAAATGAGACTGTCCAACTCTATCAGCTCTCTCGCTGGGCGAGGGGTCAGGGGTACTTGGCCCCGAAGAAAGATGAAGCTGCATCCGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006848 GO:0006850 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0010119 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1901475 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

112

Amino Acids

12.42

Weight (kDa)

9.39

Isoelectric Point (pI)

32.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	8 - 98	5.6e-36	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20090 AT5G20090 AT5G20090 AT5G20090
fragaria_vesca	FvH4_5g07810
malus_domestica	MD06G1147100.v1.1 MD14G1161000.v1.1
prunus_persica	Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1
pyrus_communis	pycom06g13670
rosa_chinensis	RchiOBHm_Chr7g0190651
rosa_laevigata	RLG00000004506
rosa_multiflora	Rmu_sc0006709.1_g000006 Rmu_sc0014053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264430
rosa_rugosa	Rorug06G0506100
rosa_samantha	Rh7AG112700 Rh7BG115200 Rh7CG117700 Rh7DG116600
rosa_wichuraiana	Rw7G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	113
AfaI	GTAC	2 cut(s)	207, 299
AgsI	TTSAA	1 cut(s)	37
AluBI	AGCT	2 cut(s)	271, 323
AluI	AGCT	2 cut(s)	271, 323
Alw26I	GTCTC	2 cut(s)	245, 247
AoxI	GGCC	1 cut(s)	303
ApeKI	GCWGC	3 cut(s)	101, 158, 323
Asp700I	GAANNNNTTC	1 cut(s)	16
AspS9I	GGNCC	3 cut(s)	50, 74, 304
AvaII	GGWCC	2 cut(s)	50, 74
BbvI	GCAGC	3 cut(s)	88, 170, 310
BccI	CCATC	1 cut(s)	196
BcoDI	GTCTC	2 cut(s)	245, 247
BisI	GCNGC	3 cut(s)	102, 159, 324
BlsI	GCNGC	3 cut(s)	103, 160, 325
Bme18I	GGWCC	2 cut(s)	50, 74
BmgT120I	GGNCC	3 cut(s)	50, 74, 304
BmiI	GGNNCC	2 cut(s)	75, 306
BmrI	ACTGGG	1 cut(s)	97
BmuI	ACTGGG	1 cut(s)	97
BpmI	CTGGAG	1 cut(s)	114
Bse1I	ACTGG	2 cut(s)	44, 92
Bse3DI	GCAATG	1 cut(s)	168
BseGI	GGATG	2 cut(s)	207, 326
BseMI	GCAATG	1 cut(s)	168
BseNI	ACTGG	2 cut(s)	44, 92
BseXI	GCAGC	3 cut(s)	88, 170, 310
BseYI	CCCAGC	1 cut(s)	279
BshFI	GGCC	1 cut(s)	305
BslFI	GGGAC	1 cut(s)	87
BsmAI	GTCTC	2 cut(s)	245, 247
BsmFI	GGGAC	1 cut(s)	87
BsmI	GAATGC	1 cut(s)	29
BsnI	GGCC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	113
BspANI	GGCC	1 cut(s)	305
BspLI	GGNNCC	2 cut(s)	75, 306
BsrDI	GCAATG	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	44, 92
Bst4CI	ACNGT	2 cut(s)	41, 256
BstC8I	GCNNGC	1 cut(s)	235
BstF5I	GGATG	2 cut(s)	207, 326
BstMAI	GTCTC	2 cut(s)	245, 247
BstMWI	GCNNNNNNNGC	1 cut(s)	110
BstNSI	RCATGY	1 cut(s)	237
BstV1I	GCAGC	3 cut(s)	88, 170, 310
BsuRI	GGCC	1 cut(s)	305
BtsCI	GGATG	2 cut(s)	207, 326
Cac8I	GCNNGC	1 cut(s)	235
Cfr13I	GGNCC	3 cut(s)	50, 74, 304
Csp6I	GTAC	2 cut(s)	206, 298
CviAII	CATG	4 cut(s)	151, 198, 234, 239
CviJI	RGCY	4 cut(s)	17, 271, 305, 323
CviKI_1	RGCY	4 cut(s)	17, 271, 305, 323
CviQI	GTAC	2 cut(s)	206, 298
EciI	GGCGGA	1 cut(s)	128
Eco47I	GGWCC	2 cut(s)	50, 74
EcoO109I	RGGNCCY	1 cut(s)	74
FaeI	CATG	4 cut(s)	154, 201, 237, 242
FaiI	YATR	6 cut(s)	119, 152, 188, 199, 235, 240
FalI	AAGNNNNNCTT	1 cut(s)	33
FaqI	GGGAC	1 cut(s)	87
FatI	CATG	4 cut(s)	150, 197, 233, 238
Fnu4HI	GCNGC	3 cut(s)	102, 159, 324
FokI	GGATG	2 cut(s)	214, 313
Fsp4HI	GCNGC	3 cut(s)	102, 159, 324
GluI	GCNGC	3 cut(s)	102, 159, 324
GsaI	CCCAGC	1 cut(s)	283
GsuI	CTGGAG	1 cut(s)	114
HaeIII	GGCC	1 cut(s)	305
Hin1II	CATG	4 cut(s)	154, 201, 237, 242
HinfI	GANTC	1 cut(s)	192
Hpy188I	TCNGA	2 cut(s)	26, 331
Hpy188III	TCNNGA	2 cut(s)	34, 131
HpyCH4III	ACNGT	2 cut(s)	41, 256
HpyCH4V	TGCA	1 cut(s)	326
HpyF10VI	GCNNNNNNNGC	1 cut(s)	110
Hsp92II	CATG	4 cut(s)	154, 201, 237, 242
LpnPI	CCDG	8 cut(s)	57, 73, 90, 90, 129, 144, 265, 278
Lsp1109I	GCAGC	3 cut(s)	88, 170, 310
MboII	GAAGA	2 cut(s)	215, 322
MmeI	TCCRAC	1 cut(s)	283
MnlI	CCTC	3 cut(s)	138, 222, 279
MroXI	GAANNNNTTC	1 cut(s)	16
MslI	CAYNNNNRTG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	110
NlaIII	CATG	4 cut(s)	154, 201, 237, 242
NlaIV	GGNNCC	2 cut(s)	75, 306
NspI	RCATGY	1 cut(s)	237
PaeI	GCATGC	1 cut(s)	237
PctI	GAATGC	1 cut(s)	29
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	3 cut(s)	103, 160, 325
PpuMI	RGGWCCY	1 cut(s)	74
Psp5II	RGGWCCY	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	279
PspN4I	GGNNCC	2 cut(s)	75, 306
PspPI	GGNCC	3 cut(s)	50, 74, 304
PspPPI	RGGWCCY	1 cut(s)	74
RsaI	GTAC	2 cut(s)	207, 299
RsaNI	GTAC	2 cut(s)	206, 298
RseI	CAYNNNNRTG	1 cut(s)	331
SatI	GCNGC	3 cut(s)	102, 159, 324
Sau96I	GGNCC	3 cut(s)	50, 74, 304
SetI	ASST	5 cut(s)	79, 130, 214, 273, 325
SinI	GGWCC	2 cut(s)	50, 74
SmiMI	CAYNNNNRTG	1 cut(s)	331
SphI	GCATGC	1 cut(s)	237
SsiI	CCGC	1 cut(s)	113
TaaI	ACNGT	2 cut(s)	41, 256
TfiI	GAWTC	1 cut(s)	192
TseI	GCWGC	3 cut(s)	101, 158, 323
TspDTI	ATGAA	2 cut(s)	134, 333
VpaK11BI	GGWCC	2 cut(s)	50, 74
XceI	RCATGY	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.