Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008050

Physical Location & Seq

Genomic Coordinates Forward (+)

9839915 .. 9842245

Gene Structure 2331 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCTTCGTTCAGAGCATTCTGGAATAGTCCAGTTGGTCCGAAAACCACTCACTTTTGGGGACCTGTTGCAAACTGGGGGTTTGTTGCCGCTGGACTGGCAGATATGAGTAAACCCCCAGAAAAAATTTCTGGAAACATGACAGCAGCAATGTGCGTTTATTCAGCATTATTTATGAGGTTTGCATGGATGGTACAGCCTCGTAACTACCTACTTTTGGCGTGCCATGTCTCGAATGAGACTGTCCAACTCTATCAACTCTCCCGCTGGGCGAAGGGTCAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005342 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005773 GO:0005774 GO:0005886 GO:0006810 GO:0006811 GO:0006820 GO:0006839 GO:0006848 GO:0006850 GO:0008028 GO:0008150 GO:0008509 GO:0008514 GO:0010119 GO:0015075 GO:0015318 GO:0015711 GO:0015718 GO:0015849 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031304 GO:0031305 GO:0031966 GO:0031967 GO:0031975 GO:0032592 GO:0034220 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044437 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046942 GO:0046943 GO:0050789 GO:0050794 GO:0050833 GO:0051179 GO:0051234 GO:0055085 GO:0065007 GO:0071702 GO:0071944 GO:0098573 GO:0098588 GO:0098656 GO:0098805 GO:1901475 GO:1903825 GO:1905039 GO:1990542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPC

Protein Analysis

95

Amino Acids

10.63

Weight (kDa)

9.69

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	4 - 92	6.5e-37	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008050)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20090 AT5G20090 AT5G20090 AT5G20090
fragaria_vesca	FvH4_5g07810
malus_domestica	MD06G1147100.v1.1 MD14G1161000.v1.1
prunus_persica	Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1 Prupe.1G584200_v2.0.a1
pyrus_communis	pycom06g13670
rosa_chinensis	RchiOBHm_Chr7g0190651
rosa_laevigata	RLG00000004506
rosa_multiflora	Rmu_sc0006709.1_g000006 Rmu_sc0014053.1_g000006
rosa_roxburghii	Rroxscaffold_3G00264430
rosa_rugosa	Rorug06G0506100
rosa_samantha	Rh7AG112700 Rh7BG115200 Rh7CG117700 Rh7DG116600
rosa_wichuraiana	Rw7G009830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	90, 265
AcsI	RAATTY	1 cut(s)	126
AfaI	GTAC	1 cut(s)	195
AfiI	CCNNNNNNNGG	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	233, 235
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	38, 62
AvaII	GGWCC	2 cut(s)	38, 62
BbvI	GCAGC	1 cut(s)	158
BccI	CCATC	1 cut(s)	184
BcoDI	GTCTC	2 cut(s)	233, 235
BisI	GCNGC	2 cut(s)	90, 147
BlsI	GCNGC	2 cut(s)	91, 148
Bme18I	GGWCC	2 cut(s)	38, 62
BmgT120I	GGNCC	2 cut(s)	38, 62
BmiI	GGNNCC	1 cut(s)	63
BmrI	ACTGGG	1 cut(s)	85
BmuI	ACTGGG	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	217
Bse1I	ACTGG	3 cut(s)	32, 80, 102
Bse3DI	GCAATG	1 cut(s)	156
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	217
BseMI	GCAATG	1 cut(s)	156
BseNI	ACTGG	3 cut(s)	32, 80, 102
BseXI	GCAGC	1 cut(s)	158
BseYI	CCCAGC	1 cut(s)	267
BslFI	GGGAC	1 cut(s)	75
BslI	CCNNNNNNNGG	1 cut(s)	217
BsmAI	GTCTC	2 cut(s)	233, 235
BsmFI	GGGAC	1 cut(s)	75
BsmI	GAATGC	1 cut(s)	17
BspACI	CCGC	2 cut(s)	90, 265
BspLI	GGNNCC	1 cut(s)	63
BsrDI	GCAATG	1 cut(s)	156
BsrI	ACTGG	3 cut(s)	32, 80, 102
Bst4CI	ACNGT	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	223
BstF5I	GGATG	1 cut(s)	195
BstMAI	GTCTC	2 cut(s)	233, 235
BstMWI	GCNNNNNNNGC	1 cut(s)	98
BstV1I	GCAGC	1 cut(s)	158
BtsCI	GGATG	1 cut(s)	195
Cac8I	GCNNGC	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	38, 62
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	139, 186, 227
CviJI	RGCY	2 cut(s)	5, 199
CviKI_1	RGCY	2 cut(s)	5, 199
CviQI	GTAC	1 cut(s)	194
Eco47I	GGWCC	2 cut(s)	38, 62
EcoO109I	RGGNCCY	1 cut(s)	62
FaeI	CATG	3 cut(s)	142, 189, 230
FaiI	YATR	5 cut(s)	107, 140, 176, 187, 228
FaqI	GGGAC	1 cut(s)	75
FatI	CATG	3 cut(s)	138, 185, 226
FauI	CCCGC	1 cut(s)	272
Fnu4HI	GCNGC	2 cut(s)	90, 147
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	90, 147
GluI	GCNGC	2 cut(s)	90, 147
GsaI	CCCAGC	1 cut(s)	271
Hin1II	CATG	3 cut(s)	142, 189, 230
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	2 cut(s)	14, 42
Hpy188III	TCNNGA	3 cut(s)	22, 132, 232
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	268
HpyCH4III	ACNGT	1 cut(s)	244
HpyCH4V	TGCA	2 cut(s)	71, 185
HpyF10VI	GCNNNNNNNGC	1 cut(s)	98
Hsp92II	CATG	3 cut(s)	142, 189, 230
Lsp1109I	GCAGC	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	203
MluCI	AATT	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	271
MnlI	CCTC	2 cut(s)	171, 210
MspA1I	CMGCKG	2 cut(s)	92, 267
Mva1269I	GAATGC	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	98
NlaIII	CATG	3 cut(s)	142, 189, 230
NlaIV	GGNNCC	1 cut(s)	63
PctI	GAATGC	1 cut(s)	17
PkrI	GCNGC	2 cut(s)	91, 148
PpuMI	RGGWCCY	1 cut(s)	62
Psp5II	RGGWCCY	1 cut(s)	62
PspFI	CCCAGC	1 cut(s)	267
PspN4I	GGNNCC	1 cut(s)	63
PspPI	GGNCC	2 cut(s)	38, 62
PspPPI	RGGWCCY	1 cut(s)	62
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
SatI	GCNGC	2 cut(s)	90, 147
Sau96I	GGNCC	2 cut(s)	38, 62
SetI	ASST	3 cut(s)	67, 182, 213
SinI	GGWCC	2 cut(s)	38, 62
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	2 cut(s)	90, 265
TaaI	ACNGT	1 cut(s)	244
TaqI	TCGA	1 cut(s)	233
TasI	AATT	1 cut(s)	126
TauI	GCSGC	1 cut(s)	92
TseI	GCWGC	1 cut(s)	146
VpaK11BI	GGWCC	2 cut(s)	38, 62
XapI	RAATTY	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.