Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014157

Physical Location & Seq

Genomic Coordinates Reverse (-)

7404004 .. 7405883

Gene Structure 1880 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G22360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGGCGATTGTCTATGCTGTTGTAGCGAGAGGTACCGTGGTATTAGCTGAATTCAGCGCCGTTACGGGAAACACAGGCGCCGTGGTGCGACGGATCCTCGAGAAGCTTTCACCGGAAATCTCCGATGAAAGACTTTGTTTCTCTCAAGATCGTTATATCTTCCATATTCTTAGATCTGATGGTCTTACCTTTCTCTGTATGGCCAATGATACCTTTGGAAGGAGGGTTCCATTTTCGTATTTGGAAGAGATTCATATGAGATTCATGAAAAACTATGGCAAAGTGGCTCATAATGCTCCAGCTTATGCAATGAATGATGAATTCTCAAGGGTTTTGCATCAGCAGATGGAGTTCTTCTCTAGTAATCCTAGTGTTGATACTCTCAATCGTGTTAGAGGAGAAGTCAGTGAGATTCGATCGGTCATGGTAGAGAACATTGAGAAGATAATGGAAAGAGGTGATAGGATTGAGCTTCTTGTTGATAAAACAGCAACAATGCAAGATAGCTCGTTTCACTTCAGGAAGCAATCTAAGCGCCTTCGCCGAGCTCTTTGGATGAAAAATGCTAAGCTCCTGGTCTTGTTGACATGCTTGATAGTTTTCTTGCTGTACATAATAATCGCATCTTTCTGCGGAGGAATCACTTTACCATCATGCAGATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

221

Amino Acids

25.32

Weight (kDa)

9.18

Isoelectric Point (pI)

59.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	30 - 109	2.8e-23	Regulated-SNARE-like domain
Synaptobrevin	PF00957	128 - 207	4.6e-28	Synaptobrevin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22360
fragaria_vesca	FvH4_3g25480
malus_domestica	MD03G1148600.v1.1
prunus_persica	Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1
pyrus_communis	pycom03g10290
rosa_chinensis	RchiOBHm_Chr5g0046561
rosa_laevigata	RLG00000034418
rosa_multiflora	Rmu_sc0003878.1_g000037
rosa_roxburghii	Rroxscaffold_1G00034840
rosa_rugosa	Rorug05G0229600
rosa_samantha	Rh5AG309900 Rh5BG318300 Rh5CG344000 Rh5DG328600
rosa_wichuraiana	Rw5G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	32
AccB1I	GGYRCC	2 cut(s)	32, 77
AciI	CCGC	1 cut(s)	633
AclWI	GGATC	2 cut(s)	88, 101
AcoI	YGGCCR	1 cut(s)	201
AcsI	RAATTY	2 cut(s)	50, 320
AcuI	CTGAAG	1 cut(s)	502
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	2 cut(s)	34, 611
AfiI	CCNNNNNNNGG	1 cut(s)	219
AjnI	CCWGG	1 cut(s)	573
AloI	GAACNNNNNNTCC	2 cut(s)	210, 242
AluBI	AGCT	7 cut(s)	47, 106, 302, 472, 507, 548, 571
AluI	AGCT	7 cut(s)	47, 106, 302, 472, 507, 548, 571
Alw21I	GWGCWC	1 cut(s)	550
AlwI	GGATC	2 cut(s)	88, 101
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	1 cut(s)	201
ApoI	RAATTY	2 cut(s)	50, 320
Asp700I	GAANNNNTTC	1 cut(s)	249
Asp718I	GGTACC	1 cut(s)	32
AspLEI	GCGC	3 cut(s)	59, 80, 537
AsuHPI	GGTGA	2 cut(s)	102, 470
AvaI	CYCGRG	1 cut(s)	98
BaeI	ACNNNNGTAYC	2 cut(s)	24, 57
BalI	TGGCCA	1 cut(s)	203
BamHI	GGATCC	1 cut(s)	93
BanI	GGYRCC	2 cut(s)	32, 77
BanII	GRGCYC	1 cut(s)	550
Bbv12I	GWGCWC	1 cut(s)	550
BccI	CCATC	3 cut(s)	173, 340, 658
BceAI	ACGGC	2 cut(s)	44, 65
BciT130I	CCWGG	1 cut(s)	575
BfaI	CTAG	2 cut(s)	360, 369
BfoI	RGCGCY	3 cut(s)	60, 81, 538
BglII	AGATCT	2 cut(s)	173, 659
BlpI	GCTNAGC	1 cut(s)	567
Bme1390I	CCNGG	1 cut(s)	575
BmeT110I	CYCGRG	1 cut(s)	98
BmiI	GGNNCC	4 cut(s)	34, 79, 95, 228
BmrFI	CCNGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	346, 632
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	1 cut(s)	282
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuEI	CTTGAG	2 cut(s)	129, 310
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	2 cut(s)	36, 81
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse3DI	GCAATG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	2 cut(s)	36, 81
BseGI	GGATG	1 cut(s)	561
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseMI	GCAATG	1 cut(s)	315
BseRI	GAGGAG	1 cut(s)	411
Bsh1285I	CGRYCG	1 cut(s)	419
BshFI	GGCC	1 cut(s)	203
BshNI	GGYRCC	2 cut(s)	32, 77
BsiEI	CGRYCG	1 cut(s)	419
BsiHKAI	GWGCWC	1 cut(s)	550
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	219
BsnI	GGCC	1 cut(s)	203
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	550
Bsp1407I	TGTACA	1 cut(s)	609
Bsp143I	GATC	5 cut(s)	93, 148, 173, 416, 659
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	1 cut(s)	633
BspANI	GGCC	1 cut(s)	203
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	4 cut(s)	34, 79, 95, 228
BspPI	GGATC	2 cut(s)	88, 101
BspT107I	GGYRCC	2 cut(s)	32, 77
BsrDI	GCAATG	1 cut(s)	315
BsrGI	TGTACA	1 cut(s)	609
BssECI	CCNNGG	2 cut(s)	36, 81
BssMI	GATC	5 cut(s)	93, 148, 173, 416, 659
BssNI	GRCGYC	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	575
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	240
BstACI	GRCGYC	1 cut(s)	78
BstAUI	TGTACA	1 cut(s)	609
BstDEI	CTNAG	3 cut(s)	170, 531, 567
BstDSI	CCRYGG	2 cut(s)	36, 81
BstENI	CCTNNNNNAGG	1 cut(s)	217
BstF5I	GGATG	1 cut(s)	561
BstH2I	RGCGCY	3 cut(s)	60, 81, 538
BstHHI	GCGC	3 cut(s)	59, 80, 537
BstKTI	GATC	5 cut(s)	96, 151, 176, 419, 662
BstMBI	GATC	5 cut(s)	93, 148, 173, 416, 659
BstMCI	CGRYCG	1 cut(s)	419
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 293, 532
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	591
BstSCI	CCNGG	1 cut(s)	573
BstX2I	RGATCY	3 cut(s)	93, 173, 659
BstYI	RGATCY	3 cut(s)	93, 173, 659
BsuRI	GGCC	1 cut(s)	203
BtgI	CCRYGG	2 cut(s)	36, 81
BtsCI	GGATG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	412
CciI	TCATGA	1 cut(s)	264
CfoI	GCGC	3 cut(s)	59, 80, 537
Csp6I	GTAC	2 cut(s)	33, 610
CviAII	CATG	4 cut(s)	265, 424, 588, 654
CviJI	RGCY	9 cut(s)	47, 106, 203, 287, 302, 472, 507, 548, 571
CviKI_1	RGCY	9 cut(s)	47, 106, 203, 287, 302, 472, 507, 548, 571
CviQI	GTAC	2 cut(s)	33, 610
DdeI	CTNAG	3 cut(s)	170, 531, 567
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	5 cut(s)	95, 150, 175, 418, 661
DpnII	GATC	5 cut(s)	93, 148, 173, 416, 659
EaeI	YGGCCR	1 cut(s)	201
Eam1104I	CTCTTC	1 cut(s)	240
EarI	CTCTTC	1 cut(s)	240
Ecl136II	GAGCTC	1 cut(s)	548
Eco24I	GRGCYC	1 cut(s)	550
Eco53kI	GAGCTC	1 cut(s)	548
Eco57I	CTGAAG	1 cut(s)	502
Eco88I	CYCGRG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	548
EcoNI	CCTNNNNNAGG	1 cut(s)	217
EcoRI	GAATTC	2 cut(s)	50, 320
EcoRII	CCWGG	1 cut(s)	573
EcoT38I	GRGCYC	1 cut(s)	550
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
FaeI	CATG	4 cut(s)	268, 427, 591, 657
FatI	CATG	4 cut(s)	264, 423, 587, 653
FauNDI	CATATG	1 cut(s)	255
FokI	GGATG	1 cut(s)	568
FriOI	GRGCYC	1 cut(s)	550
FspBI	CTAG	2 cut(s)	360, 369
GlaI	GCGC	3 cut(s)	58, 79, 536
GsuI	CTGGAG	1 cut(s)	282
HaeII	RGCGCY	3 cut(s)	60, 81, 538
HaeIII	GGCC	1 cut(s)	203
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	3 cut(s)	59, 80, 537
Hin1I	GRCGYC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	268, 427, 591, 657
Hin6I	GCGC	3 cut(s)	57, 78, 535
HinP1I	GCGC	3 cut(s)	57, 78, 535
HincII	GTYRAC	1 cut(s)	585
HindII	GTYRAC	1 cut(s)	585
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	4 cut(s)	250, 261, 412, 639
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	2 cut(s)	102, 470
Hpy166II	GTNNAC	1 cut(s)	585
Hpy188I	TCNGA	2 cut(s)	124, 178
Hpy188III	TCNNGA	4 cut(s)	100, 146, 265, 520
Hpy8I	GTNNAC	1 cut(s)	585
Hpy99I	CGWCG	1 cut(s)	93
HpyAV	CCTTC	2 cut(s)	213, 548
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4V	TGCA	4 cut(s)	308, 337, 499, 657
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 293, 532
HpyF3I	CTNAG	3 cut(s)	170, 531, 567
Hsp92I	GRCGYC	1 cut(s)	78
Hsp92II	CATG	4 cut(s)	268, 427, 591, 657
HspAI	GCGC	3 cut(s)	57, 78, 535
KasI	GGCGCC	1 cut(s)	77
KpnI	GGTACC	1 cut(s)	36
Kzo9I	GATC	5 cut(s)	93, 148, 173, 416, 659
LmnI	GCTCC	2 cut(s)	301, 576
LpnPI	CCDG	6 cut(s)	60, 126, 312, 505, 560, 587
LweI	GCATC	2 cut(s)	346, 632
MaeI	CTAG	2 cut(s)	360, 369
MaeIII	GTNAC	1 cut(s)	61
MalI	GATC	5 cut(s)	95, 150, 175, 418, 661
MboI	GATC	5 cut(s)	93, 148, 173, 416, 659
MboII	GAAGA	4 cut(s)	151, 257, 346, 454
MflI	RGATCY	3 cut(s)	93, 173, 659
MhlI	GDGCHC	1 cut(s)	550
MlsI	TGGCCA	1 cut(s)	203
MluCI	AATT	2 cut(s)	50, 320
MluNI	TGGCCA	1 cut(s)	203
Mly113I	GGCGCC	1 cut(s)	78
MnlI	CCTC	6 cut(s)	23, 107, 216, 389, 449, 629
Mox20I	TGGCCA	1 cut(s)	203
MroXI	GAANNNNTTC	1 cut(s)	249
MscI	TGGCCA	1 cut(s)	203
MseI	TTAA	1 cut(s)	664
Msp20I	TGGCCA	1 cut(s)	203
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	575
MvaI	CCWGG	1 cut(s)	575
MwoI	GCNNNNNNNGC	3 cut(s)	23, 293, 532
NarI	GGCGCC	1 cut(s)	78
NdeI	CATATG	1 cut(s)	255
NdeII	GATC	5 cut(s)	93, 148, 173, 416, 659
NlaIII	CATG	4 cut(s)	268, 427, 591, 657
NlaIV	GGNNCC	4 cut(s)	34, 79, 95, 228
NmeAIII	GCCGAG	1 cut(s)	569
NspI	RCATGY	1 cut(s)	591
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	264
PdmI	GAANNNNTTC	1 cut(s)	249
PfeI	GAWTC	4 cut(s)	250, 261, 412, 639
Ple19I	CGATCG	1 cut(s)	419
PluTI	GGCGCC	1 cut(s)	81
Psp124BI	GAGCTC	1 cut(s)	550
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	4 cut(s)	34, 79, 95, 228
PsuI	RGATCY	3 cut(s)	93, 173, 659
PvuI	CGATCG	1 cut(s)	419
RsaI	GTAC	2 cut(s)	34, 611
RsaNI	GTAC	2 cut(s)	33, 610
SacI	GAGCTC	1 cut(s)	550
SaqAI	TTAA	1 cut(s)	664
Sau3AI	GATC	5 cut(s)	93, 148, 173, 416, 659
ScrFI	CCNGG	1 cut(s)	575
SduI	GDGCHC	1 cut(s)	550
SfaNI	GCATC	2 cut(s)	346, 632
SfoI	GGCGCC	1 cut(s)	79
Sfr274I	CTCGAG	1 cut(s)	98
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	3 cut(s)	98, 144, 325
SmoI	CTYRAG	3 cut(s)	98, 144, 325
Sse9I	AATT	2 cut(s)	50, 320
SsiI	CCGC	1 cut(s)	633
SspDI	GGCGCC	1 cut(s)	77
SspMI	CTAG	2 cut(s)	360, 369
SstI	GAGCTC	1 cut(s)	550
StyD4I	CCNGG	1 cut(s)	573
TaaI	ACNGT	1 cut(s)	37
TaqI	TCGA	2 cut(s)	99, 415
TaqII	GACCGA	1 cut(s)	409
TasI	AATT	2 cut(s)	50, 320
TatI	WGTACW	1 cut(s)	609
TfiI	GAWTC	4 cut(s)	250, 261, 412, 639
Tru1I	TTAA	1 cut(s)	664
Tru9I	TTAA	1 cut(s)	664
TscAI	CASTG	1 cut(s)	412
TspDTI	ATGAA	7 cut(s)	141, 242, 253, 281, 326, 333, 572
TspGWI	ACGGA	1 cut(s)	106
TspRI	CASTG	1 cut(s)	412
XagI	CCTNNNNNAGG	1 cut(s)	217
XapI	RAATTY	2 cut(s)	50, 320
XceI	RCATGY	1 cut(s)	591
XhoI	CTCGAG	1 cut(s)	98
XmnI	GAANNNNTTC	1 cut(s)	249
XspI	CTAG	2 cut(s)	360, 369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.