Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0014157

Physical Location & Seq

Genomic Coordinates Forward (+)

10630403 .. 10634424

Gene Structure 4022 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G134600.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGATTCTCTACGCCGTGGTGGCTCGAGGAACAATCGTGTTGGCCGAGTTCAGCGCGGTCACAGGGAACACAGGGGCAGTGGCTCGGCGCATCTTGGAAAAGCTTCCATCGGAGGCGGATTCTAGGGTTTGCTTCTCCCAGGATCGGTACATCTTCCACATACTCAAATCCGATGGCCTCACTTTTCTTTGCATGGCCAACGACACCTTCGGCAGGAGAATACCCTTCTCATACTTGGAGGATATTCATATGAGATTTATGAAAAATTATGGCAGAGTGGCCCCTTATGCTCCTGCTTATGCAATGAACGACGAATTTTCGAGGGTTTTGCATCAGCAGATGGAGTTTTTCTCCAGCAATCCTAGCGCTGATACTCTCAACCGTGTGAGAGGCGAAGTTGGTGAGATACGAACTATAATGGTGGACAACATAGAAAAGATATTGGAGAGGGGTGACCGAATTGAGCTTCTTGTTGACAAAACTGCAACTATGCAAGATAGTGCATTTCACTTCAAGAAGCAGTCCAAACGGCTTCGTCGAGCTCTGTGGATGAAAAATGCCAAGCTCTTGGCCCTGTTGACATGCGTGATTGTTGTGCTTCTGTACATTATAATTGCTGTTTGTTGTGGAGGCGTCACGCTACCTTCCTGCAGATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

221

Amino Acids

24.9

Weight (kDa)

9.2

Isoelectric Point (pI)

51.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22360
fragaria_vesca	FvH4_3g25480
malus_domestica	MD03G1148600.v1.1
prunus_persica	Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1
pyrus_communis	pycom03g10290
rosa_chinensis	RchiOBHm_Chr5g0046561
rosa_laevigata	RLG00000034418
rosa_multiflora	Rmu_sc0003878.1_g000037
rosa_roxburghii	Rroxscaffold_1G00034840
rosa_rugosa	Rorug05G0229600
rosa_samantha	Rh5AG309900 Rh5BG318300 Rh5CG344000 Rh5DG328600
rosa_wichuraiana	Rw5G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	614
AccII	CGCG	1 cut(s)	59
AciI	CCGC	2 cut(s)	59, 119
AclWI	GGATC	1 cut(s)	153
AcoI	YGGCCR	2 cut(s)	45, 198
AcsI	RAATTY	1 cut(s)	317
AcyI	GRCGYC	1 cut(s)	636
AfaI	GTAC	2 cut(s)	152, 608
AfeI	AGCGCT	1 cut(s)	370
AfiI	CCNNNNNNNGG	2 cut(s)	147, 216
AgsI	TTSAA	1 cut(s)	517
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	4 cut(s)	106, 469, 545, 568
AluI	AGCT	4 cut(s)	106, 469, 545, 568
Alw21I	GWGCWC	1 cut(s)	547
AlwI	GGATC	1 cut(s)	153
Ama87I	CYCGRG	1 cut(s)	27
Aor51HI	AGCGCT	1 cut(s)	370
AoxI	GGCC	5 cut(s)	45, 178, 198, 282, 573
ApoI	RAATTY	1 cut(s)	317
Asp700I	GAANNNNTTC	1 cut(s)	105
AspLEI	GCGC	3 cut(s)	59, 93, 371
AspS9I	GGNCC	2 cut(s)	283, 574
AsuHPI	GGTGA	2 cut(s)	416, 467
AvaI	CYCGRG	1 cut(s)	27
BalI	TGGCCA	1 cut(s)	200
BanII	GRGCYC	1 cut(s)	547
Bbv12I	GWGCWC	1 cut(s)	547
BccI	CCATC	3 cut(s)	118, 170, 337
BceAI	ACGGC	2 cut(s)	2, 548
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	1 cut(s)	143
BfaI	CTAG	2 cut(s)	126, 366
BfmI	CTRYAG	1 cut(s)	652
BfoI	RGCGCY	1 cut(s)	372
BglI	GCCNNNNNGGC	1 cut(s)	23
BglII	AGATCT	1 cut(s)	656
Bme1390I	CCNGG	1 cut(s)	143
BmeT110I	CYCGRG	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	283, 574
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	2 cut(s)	102, 343
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	636
BsaJI	CCNNGG	2 cut(s)	18, 141
Bsc4I	CCNNNNNNNGG	2 cut(s)	147, 216
Bse3DI	GCAATG	1 cut(s)	312
BseBI	CCWGG	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	18, 141
BseGI	GGATG	1 cut(s)	558
BseLI	CCNNNNNNNGG	2 cut(s)	147, 216
BseMI	GCAATG	1 cut(s)	312
Bsh1236I	CGCG	1 cut(s)	59
BshFI	GGCC	5 cut(s)	47, 180, 200, 284, 575
BsiHKAI	GWGCWC	1 cut(s)	547
BsiHKCI	CYCGRG	1 cut(s)	27
BslI	CCNNNNNNNGG	2 cut(s)	147, 216
BsnI	GGCC	5 cut(s)	47, 180, 200, 284, 575
BsoBI	CYCGRG	1 cut(s)	27
Bsp1286I	GDGCHC	1 cut(s)	547
Bsp1407I	TGTACA	1 cut(s)	606
Bsp143I	GATC	2 cut(s)	145, 656
BspACI	CCGC	2 cut(s)	59, 119
BspANI	GGCC	5 cut(s)	47, 180, 200, 284, 575
BspFNI	CGCG	1 cut(s)	59
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	656
BspPI	GGATC	1 cut(s)	153
BsrDI	GCAATG	1 cut(s)	312
BsrGI	TGTACA	1 cut(s)	606
BssECI	CCNNGG	2 cut(s)	18, 141
BssMI	GATC	2 cut(s)	145, 656
BssNI	GRCGYC	1 cut(s)	636
Bst2UI	CCWGG	1 cut(s)	143
Bst4CI	ACNGT	1 cut(s)	386
BstACI	GRCGYC	1 cut(s)	636
BstAUI	TGTACA	1 cut(s)	606
BstDSI	CCRYGG	1 cut(s)	18
BstEII	GGTNACC	1 cut(s)	455
BstENI	CCTNNNNNAGG	1 cut(s)	214
BstF5I	GGATG	1 cut(s)	558
BstFNI	CGCG	1 cut(s)	59
BstH2I	RGCGCY	1 cut(s)	372
BstHHI	GCGC	3 cut(s)	59, 93, 371
BstKTI	GATC	2 cut(s)	148, 659
BstMBI	GATC	2 cut(s)	145, 656
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 290, 366
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	1 cut(s)	588
BstPI	GGTNACC	1 cut(s)	455
BstSCI	CCNGG	1 cut(s)	141
BstSFI	CTRYAG	1 cut(s)	652
BstUI	CGCG	1 cut(s)	59
BstX2I	RGATCY	1 cut(s)	656
BstXI	CCANNNNNNTGG	1 cut(s)	571
BstYI	RGATCY	1 cut(s)	656
BsuRI	GGCC	5 cut(s)	47, 180, 200, 284, 575
BtgI	CCRYGG	1 cut(s)	18
BtsCI	GGATG	1 cut(s)	558
BtsI	GCAGTG	1 cut(s)	87
BtsIMutI	CAGTG	1 cut(s)	87
CfoI	GCGC	3 cut(s)	59, 93, 371
Cfr13I	GGNCC	2 cut(s)	283, 574
CseI	GACGC	1 cut(s)	625
Csp6I	GTAC	2 cut(s)	151, 607
CviAII	CATG	2 cut(s)	196, 585
CviQI	GTAC	2 cut(s)	151, 607
DpnI	GATC	2 cut(s)	147, 658
DpnII	GATC	2 cut(s)	145, 656
EaeI	YGGCCR	2 cut(s)	45, 198
EciI	GGCGGA	1 cut(s)	134
Ecl136II	GAGCTC	1 cut(s)	545
Eco24I	GRGCYC	1 cut(s)	547
Eco47III	AGCGCT	1 cut(s)	370
Eco53kI	GAGCTC	1 cut(s)	545
Eco88I	CYCGRG	1 cut(s)	27
Eco91I	GGTNACC	1 cut(s)	455
EcoICRI	GAGCTC	1 cut(s)	545
EcoNI	CCTNNNNNAGG	1 cut(s)	214
EcoO65I	GGTNACC	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	141
EcoT38I	GRGCYC	1 cut(s)	547
FaeI	CATG	2 cut(s)	199, 588
FatI	CATG	2 cut(s)	195, 584
FauNDI	CATATG	1 cut(s)	252
FokI	GGATG	1 cut(s)	565
FriOI	GRGCYC	1 cut(s)	547
FspBI	CTAG	2 cut(s)	126, 366
GlaI	GCGC	3 cut(s)	58, 92, 370
GsuI	CTGGAG	1 cut(s)	340
HaeII	RGCGCY	1 cut(s)	372
HaeIII	GGCC	5 cut(s)	47, 180, 200, 284, 575
HgaI	GACGC	1 cut(s)	625
HhaI	GCGC	3 cut(s)	59, 93, 371
Hin1I	GRCGYC	1 cut(s)	636
Hin1II	CATG	2 cut(s)	199, 588
Hin6I	GCGC	3 cut(s)	57, 91, 369
HinP1I	GCGC	3 cut(s)	57, 91, 369
HincII	GTYRAC	2 cut(s)	478, 582
HindII	GTYRAC	2 cut(s)	478, 582
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	2 cut(s)	7, 122
HphI	GGTGA	2 cut(s)	416, 467
Hpy166II	GTNNAC	3 cut(s)	427, 478, 582
Hpy188I	TCNGA	2 cut(s)	115, 175
Hpy188III	TCNNGA	2 cut(s)	517, 660
Hpy8I	GTNNAC	3 cut(s)	427, 478, 582
Hpy99I	CGWCG	2 cut(s)	317, 543
HpyAV	CCTTC	3 cut(s)	220, 238, 657
HpyCH4III	ACNGT	1 cut(s)	386
HpyCH4V	TGCA	7 cut(s)	195, 305, 334, 488, 496, 506, 654
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 290, 366
Hsp92I	GRCGYC	1 cut(s)	636
Hsp92II	CATG	2 cut(s)	199, 588
HspAI	GCGC	3 cut(s)	57, 91, 369
Kzo9I	GATC	2 cut(s)	145, 656
LmnI	GCTCC	1 cut(s)	298
LpnPI	CCDG	8 cut(s)	51, 60, 128, 155, 202, 309, 370, 590
LweI	GCATC	2 cut(s)	102, 343
MaeI	CTAG	2 cut(s)	126, 366
MaeIII	GTNAC	3 cut(s)	61, 455, 637
MalI	GATC	2 cut(s)	147, 658
MboI	GATC	2 cut(s)	145, 656
MboII	GAAGA	1 cut(s)	148
MflI	RGATCY	1 cut(s)	656
MhlI	GDGCHC	1 cut(s)	547
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	4 cut(s)	268, 317, 462, 615
MluNI	TGGCCA	1 cut(s)	200
MnlI	CCTC	8 cut(s)	23, 109, 191, 235, 318, 386, 444, 626
Mox20I	TGGCCA	1 cut(s)	200
MroXI	GAANNNNTTC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	200
Msp20I	TGGCCA	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	143
MvaI	CCWGG	1 cut(s)	143
MvnI	CGCG	1 cut(s)	59
MwoI	GCNNNNNNNGC	3 cut(s)	23, 290, 366
NdeI	CATATG	1 cut(s)	252
NdeII	GATC	2 cut(s)	145, 656
NlaIII	CATG	2 cut(s)	199, 588
NlaIV	GGNNCC	1 cut(s)	285
NmeAIII	GCCGAG	2 cut(s)	67, 73
NmuCI	GTSAC	3 cut(s)	61, 455, 637
NspI	RCATGY	1 cut(s)	588
PaeR7I	CTCGAG	1 cut(s)	27
PcsI	WCGNNNNNNNCGW	2 cut(s)	45, 538
PdmI	GAANNNNTTC	1 cut(s)	105
PfeI	GAWTC	2 cut(s)	7, 122
PsiI	TTATAA	1 cut(s)	614
Psp124BI	GAGCTC	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	141
PspEI	GGTNACC	1 cut(s)	455
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	283, 574
PspXI	VCTCGAGB	1 cut(s)	27
PstI	CTGCAG	1 cut(s)	656
PsuI	RGATCY	1 cut(s)	656
RsaI	GTAC	2 cut(s)	152, 608
RsaNI	GTAC	2 cut(s)	151, 607
SacI	GAGCTC	1 cut(s)	547
Sau3AI	GATC	2 cut(s)	145, 656
Sau96I	GGNCC	2 cut(s)	283, 574
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	1 cut(s)	547
SetI	ASST	6 cut(s)	108, 212, 471, 547, 570, 649
SfaNI	GCATC	2 cut(s)	102, 343
SfcI	CTRYAG	1 cut(s)	652
Sfr274I	CTCGAG	1 cut(s)	27
SlaI	CTCGAG	1 cut(s)	27
SmlI	CTYRAG	1 cut(s)	27
SmoI	CTYRAG	1 cut(s)	27
Sse9I	AATT	4 cut(s)	268, 317, 462, 615
SsiI	CCGC	2 cut(s)	59, 119
SspMI	CTAG	2 cut(s)	126, 366
SstI	GAGCTC	1 cut(s)	547
StyD4I	CCNGG	1 cut(s)	141
TaaI	ACNGT	1 cut(s)	386
TaqI	TCGA	3 cut(s)	28, 323, 541
TaqII	GACCGA	1 cut(s)	474
TasI	AATT	4 cut(s)	268, 317, 462, 615
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	2 cut(s)	7, 122
TscAI	CASTG	1 cut(s)	87
TseFI	GTSAC	3 cut(s)	61, 455, 637
Tsp45I	GTSAC	3 cut(s)	61, 455, 637
TspDTI	ATGAA	4 cut(s)	239, 278, 323, 569
TspRI	CASTG	1 cut(s)	87
XagI	CCTNNNNNAGG	1 cut(s)	214
XapI	RAATTY	1 cut(s)	317
XceI	RCATGY	1 cut(s)	588
XhoI	CTCGAG	1 cut(s)	27
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	2 cut(s)	126, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.