Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0014157

Physical Location & Seq

Genomic Coordinates Forward (+)

18390310 .. 18394250

Gene Structure 3941 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g25480.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGCGATACTCTACGCCGTCGTCGCTCGTGGCACCGTCGTGCTGGCCGAGTTTAGCGCCGTCACCGGAAACACAGGCGCCGTGGCTCGCCGGATCTTAGAGAAGCTCCCGCCGGACGCCGATTCCAGGGTTTGCTTCTCCCAGGATCGGTACATCTTCCACATACTCACCTTGGATGGCCTCATCTTTCTCTGCATGGCCAACGACACTTTCGGCAGGAGGATACCGTTTGCGTATTTGGAGGATGTGCACATGAGATTCATGAAGAATTACGGCAGAGTTGCGCCTTATGCTCCTGCTTATGCGATGAACGACGAGTTTTCGAGAGTGCTGCACCAGCAAATGGAGTTTTTCTCCAGCAATCCCAGTGCTGATACTCTCAACCGTGTGAGAGGCGAAGTTGGTGAGGCAAGTATTATTGTGCTCGTCTTTGATTTTCCGTTACGAGTCTTGGAAATGTTTGTGTTGACAATGAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

161

Amino Acids

18.11

Weight (kDa)

6.28

Isoelectric Point (pI)

41.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Longin	PF13774	29 - 108	1.2e-22	Regulated-SNARE-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0014157)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G22360
fragaria_vesca	FvH4_3g25480
malus_domestica	MD03G1148600.v1.1
prunus_persica	Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1 Prupe.6G134600_v2.0.a1
pyrus_communis	pycom03g10290
rosa_chinensis	RchiOBHm_Chr5g0046561
rosa_laevigata	RLG00000034418
rosa_multiflora	Rmu_sc0003878.1_g000037
rosa_roxburghii	Rroxscaffold_1G00034840
rosa_rugosa	Rorug05G0229600
rosa_samantha	Rh5AG309900 Rh5BG318300 Rh5CG344000 Rh5DG328600
rosa_wichuraiana	Rw5G028910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	32, 77
AccB7I	CCANNNNNTGG	1 cut(s)	343
AciI	CCGC	1 cut(s)	110
AclWI	GGATC	2 cut(s)	101, 153
AcoI	YGGCCR	2 cut(s)	45, 198
AcyI	GRCGYC	2 cut(s)	78, 117
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	3 cut(s)	126, 147, 343
AjnI	CCWGG	2 cut(s)	125, 141
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AleI	CACNNNNGTG	1 cut(s)	38
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw21I	GWGCWC	2 cut(s)	252, 426
Alw44I	GTGCAC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	101, 153
AoxI	GGCC	3 cut(s)	45, 178, 198
ApaLI	GTGCAC	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	331
AspLEI	GCGC	3 cut(s)	59, 80, 286
AsuHPI	GGTGA	3 cut(s)	55, 160, 416
BaeGI	GKGCMC	1 cut(s)	252
BalI	TGGCCA	1 cut(s)	200
BanI	GGYRCC	2 cut(s)	32, 77
BauI	CACGAG	1 cut(s)	27
Bbv12I	GWGCWC	2 cut(s)	252, 426
BbvI	GCAGC	1 cut(s)	318
BccI	CCATC	1 cut(s)	170
BceAI	ACGGC	4 cut(s)	2, 44, 65, 289
BcgI	CGANNNNNNTGC	2 cut(s)	313, 347
BciT130I	CCWGG	2 cut(s)	127, 143
BciVI	GTATCC	1 cut(s)	216
BfoI	RGCGCY	2 cut(s)	60, 81
BfuI	GTATCC	1 cut(s)	216
BisI	GCNGC	1 cut(s)	332
BlsI	GCNGC	1 cut(s)	333
Bme1390I	CCNGG	2 cut(s)	127, 143
BmiI	GGNNCC	2 cut(s)	34, 79
BmrFI	CCNGG	2 cut(s)	127, 143
BmrI	ACTGGG	1 cut(s)	360
BmuI	ACTGGG	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	338, 370
BpmI	CTGGAG	1 cut(s)	340
BsaHI	GRCGYC	2 cut(s)	78, 117
BsaJI	CCNNGG	4 cut(s)	81, 126, 141, 171
BsaWI	WCCGGW	1 cut(s)	65
Bsc4I	CCNNNNNNNGG	3 cut(s)	126, 147, 343
Bse1I	ACTGG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	127, 143
BseDI	CCNNGG	4 cut(s)	81, 126, 141, 171
BseGI	GGATG	2 cut(s)	181, 250
BseLI	CCNNNNNNNGG	3 cut(s)	126, 147, 343
BseNI	ACTGG	1 cut(s)	366
BseSI	GKGCMC	1 cut(s)	252
BseXI	GCAGC	1 cut(s)	318
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	3 cut(s)	47, 180, 200
BshNI	GGYRCC	2 cut(s)	32, 77
BsiHKAI	GWGCWC	2 cut(s)	252, 426
BsiSI	CCGG	3 cut(s)	66, 91, 113
BslI	CCNNNNNNNGG	3 cut(s)	126, 147, 343
BsnI	GGCC	3 cut(s)	47, 180, 200
Bsp1286I	GDGCHC	2 cut(s)	252, 426
Bsp143I	GATC	2 cut(s)	93, 145
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	3 cut(s)	47, 180, 200
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	2 cut(s)	34, 79
BspPI	GGATC	2 cut(s)	101, 153
BspT107I	GGYRCC	2 cut(s)	32, 77
BsrI	ACTGG	1 cut(s)	366
BssECI	CCNNGG	4 cut(s)	81, 126, 141, 171
BssMI	GATC	2 cut(s)	93, 145
BssNI	GRCGYC	2 cut(s)	78, 117
BssSI	CACGAG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	171
Bst2BI	CACGAG	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	127, 143
Bst4CI	ACNGT	3 cut(s)	37, 228, 386
BstACI	GRCGYC	2 cut(s)	78, 117
BstC8I	GCNNGC	2 cut(s)	45, 88
BstDEI	CTNAG	1 cut(s)	97
BstDSI	CCRYGG	1 cut(s)	81
BstF5I	GGATG	2 cut(s)	181, 250
BstH2I	RGCGCY	2 cut(s)	60, 81
BstHHI	GCGC	3 cut(s)	59, 80, 286
BstKTI	GATC	2 cut(s)	96, 148
BstMBI	GATC	2 cut(s)	93, 145
BstMWI	GCNNNNNNNGC	3 cut(s)	23, 290, 337
BstNI	CCWGG	2 cut(s)	127, 143
BstSCI	CCNGG	2 cut(s)	125, 141
BstSLI	GKGCMC	1 cut(s)	252
BstV1I	GCAGC	1 cut(s)	318
BstX2I	RGATCY	1 cut(s)	93
BstYI	RGATCY	1 cut(s)	93
BsuI	GTATCC	1 cut(s)	216
BsuRI	GGCC	3 cut(s)	47, 180, 200
BtgI	CCRYGG	1 cut(s)	81
BtgZI	GCGATG	1 cut(s)	320
BtsCI	GGATG	2 cut(s)	181, 250
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	2 cut(s)	45, 88
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	3 cut(s)	59, 80, 286
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	151
CviAII	CATG	3 cut(s)	196, 253, 262
CviJI	RGCY	5 cut(s)	47, 86, 106, 180, 200
CviKI_1	RGCY	5 cut(s)	47, 86, 106, 180, 200
CviQI	GTAC	1 cut(s)	151
DdeI	CTNAG	1 cut(s)	97
DinI	GGCGCC	1 cut(s)	79
DpnI	GATC	2 cut(s)	95, 147
DpnII	GATC	2 cut(s)	93, 145
EaeI	YGGCCR	2 cut(s)	45, 198
Eco130I	CCWWGG	1 cut(s)	171
EcoRII	CCWGG	2 cut(s)	125, 141
EcoT14I	CCWWGG	1 cut(s)	171
EgeI	GGCGCC	1 cut(s)	79
EheI	GGCGCC	1 cut(s)	79
ErhI	CCWWGG	1 cut(s)	171
FaeI	CATG	3 cut(s)	199, 256, 265
FaiI	YATR	6 cut(s)	164, 197, 254, 263, 291, 303
FatI	CATG	3 cut(s)	195, 252, 261
FauI	CCCGC	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	332
FokI	GGATG	2 cut(s)	188, 257
Fsp4HI	GCNGC	1 cut(s)	332
GlaI	GCGC	3 cut(s)	58, 79, 285
GluI	GCNGC	1 cut(s)	332
GsuI	CTGGAG	1 cut(s)	340
HaeII	RGCGCY	2 cut(s)	60, 81
HaeIII	GGCC	3 cut(s)	47, 180, 200
HapII	CCGG	3 cut(s)	66, 91, 113
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	3 cut(s)	59, 80, 286
Hin1I	GRCGYC	2 cut(s)	78, 117
Hin1II	CATG	3 cut(s)	199, 256, 265
Hin6I	GCGC	3 cut(s)	57, 78, 284
HinP1I	GCGC	3 cut(s)	57, 78, 284
HincII	GTYRAC	1 cut(s)	468
HindII	GTYRAC	1 cut(s)	468
HinfI	GANTC	3 cut(s)	122, 258, 447
HpaII	CCGG	3 cut(s)	66, 91, 113
HphI	GGTGA	3 cut(s)	55, 160, 416
Hpy166II	GTNNAC	2 cut(s)	250, 468
Hpy188III	TCNNGA	2 cut(s)	262, 324
Hpy8I	GTNNAC	2 cut(s)	250, 468
Hpy99I	CGWCG	4 cut(s)	23, 26, 41, 317
HpyCH4III	ACNGT	3 cut(s)	37, 228, 386
HpyCH4V	TGCA	3 cut(s)	195, 250, 334
HpyF10VI	GCNNNNNNNGC	3 cut(s)	23, 290, 337
HpyF3I	CTNAG	1 cut(s)	97
Hsp92I	GRCGYC	2 cut(s)	78, 117
Hsp92II	CATG	3 cut(s)	199, 256, 265
HspAI	GCGC	3 cut(s)	57, 78, 284
KasI	GGCGCC	1 cut(s)	77
Kzo9I	GATC	2 cut(s)	93, 145
LmnI	GCTCC	2 cut(s)	111, 298
Lsp1109I	GCAGC	1 cut(s)	318
MaeIII	GTNAC	2 cut(s)	61, 441
MalI	GATC	2 cut(s)	95, 147
MboI	GATC	2 cut(s)	93, 145
MboII	GAAGA	2 cut(s)	148, 277
MflI	RGATCY	1 cut(s)	93
MhlI	GDGCHC	2 cut(s)	252, 426
MlsI	TGGCCA	1 cut(s)	200
MluCI	AATT	1 cut(s)	268
MluNI	TGGCCA	1 cut(s)	200
Mly113I	GGCGCC	1 cut(s)	78
MlyI	GAGTC	1 cut(s)	456
MnlI	CCTC	5 cut(s)	191, 213, 235, 386, 400
Mox20I	TGGCCA	1 cut(s)	200
MscI	TGGCCA	1 cut(s)	200
MslI	CAYNNNNRTG	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	200
MspI	CCGG	3 cut(s)	66, 91, 113
MspR9I	CCNGG	2 cut(s)	127, 143
MvaI	CCWGG	2 cut(s)	127, 143
MwoI	GCNNNNNNNGC	3 cut(s)	23, 290, 337
NarI	GGCGCC	1 cut(s)	78
NdeII	GATC	2 cut(s)	93, 145
NlaIII	CATG	3 cut(s)	199, 256, 265
NlaIV	GGNNCC	2 cut(s)	34, 79
NmeAIII	GCCGAG	1 cut(s)	73
NmuCI	GTSAC	1 cut(s)	61
OliI	CACNNNNGTG	1 cut(s)	38
PagI	TCATGA	1 cut(s)	261
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PfeI	GAWTC	2 cut(s)	122, 258
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	333
PleI	GAGTC	1 cut(s)	455
PluTI	GGCGCC	1 cut(s)	81
PpsI	GAGTC	1 cut(s)	455
Psp6I	CCWGG	2 cut(s)	125, 141
PspGI	CCWGG	2 cut(s)	125, 141
PspN4I	GGNNCC	2 cut(s)	34, 79
PsuI	RGATCY	1 cut(s)	93
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	38
SatI	GCNGC	1 cut(s)	332
Sau3AI	GATC	2 cut(s)	93, 145
SchI	GAGTC	1 cut(s)	456
ScrFI	CCNGG	2 cut(s)	127, 143
SduI	GDGCHC	2 cut(s)	252, 426
SetI	ASST	2 cut(s)	108, 173
SfoI	GGCGCC	1 cut(s)	79
SmiMI	CAYNNNNRTG	1 cut(s)	38
Sse9I	AATT	1 cut(s)	268
SsiI	CCGC	1 cut(s)	110
SspDI	GGCGCC	1 cut(s)	77
StyD4I	CCNGG	2 cut(s)	125, 141
StyI	CCWWGG	1 cut(s)	171
TaaI	ACNGT	3 cut(s)	37, 228, 386
TaqI	TCGA	1 cut(s)	323
TasI	AATT	1 cut(s)	268
TfiI	GAWTC	2 cut(s)	122, 258
TscAI	CASTG	1 cut(s)	373
TseFI	GTSAC	1 cut(s)	61
TseI	GCWGC	1 cut(s)	331
Tsp45I	GTSAC	1 cut(s)	61
TspDTI	ATGAA	3 cut(s)	250, 278, 323
TspGWI	ACGGA	1 cut(s)	429
TspRI	CASTG	1 cut(s)	373
Van91I	CCANNNNNTGG	1 cut(s)	343
VneI	GTGCAC	1 cut(s)	248

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.