Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0010611

Physical Location & Seq

Genomic Coordinates Forward (+)

23896591 .. 23899675

Gene Structure 3085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0229600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1056 bp

ATGGGTTTTGCCGAGGAAGAGTTGCAGATTGTCTTCCAGACATTGATGGAGAAGATCCCGTCAGAAAATCCTTCAGCAAAATGTCCATTCAACTATATAATTATGGAGAAGGGTGGGTTGATGGGGAAGGTTGCATCTGATAAGTGCCACAAATGGGTCTTCAAAGAACCAACAGAGTGCGAACCAAACATCTCCAACTACTGGCAAAGTTCATTTGATGCTCTTCCTCCTGAATGGACTGATCAGTTCGAGTCAGGAATTCAGACAATTGCTGTAATTCAAGCTGGCCATGGACTTCTGCAATTGGGTTCCTGCAAAATTATACCTGAAGACCTTCATTTTGTGCTAAGAATGAGGCACACCTTTGAATCTCTAGGCTACCAATCTGGTTTCTACCTATCTCAGCTTTTTGCTTCAAACAGAAACAATTCAAATTCCTCTGTTCCAGTACTTCCTTTGAAGCAATCCCCCATTCCAATTCGACCTCCTCCTCCTTTGTTCAATTGGGCTCAAAGGCCACTCCCACCTGCATCATCTATGCAGCTGCCTTCACCCAATTTTCAAAACTCCGCTGCAGCCAGACTAGGGTATCCTCACCAACCCAACAAAGACGAAAGCACCCATATGTTTTTGCTGCCTCATTCGGCTGAAACCCAAATGGGAGATCACCACATGATGGGAGGAGAACAGCATGAAAATGACATCAAGTGGCCAAATGGGCTGTCTTTCTTCAGTGCCCTCACTGGACGAAGTGAGGATGCAAAGCTTTTGTTCAACCCGGAGAACTTAGGAAACAAAGCAGCAGAGGAAGATCCGAATTCAGAAGCTTCCAACAATCCCAATCACGAGTTCTTGAGCTTGGATTGCCATCCGGATAGTAGTAATGCAAGGAAGATGAACATGGAAAATAAGTACAAGAGGAGCTTCACTTTGCCTGCAAGAATGACCTCATCATCTTCAACTTCAGTTGATCATCACCACCAGCACCAGAACGTGTACAATCGGAATTCTGAAGCCGGTATGTACTCTGATGTCATGGAGACCTTCTTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000149 GO:0003674 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005794 GO:0006810 GO:0006887 GO:0006906 GO:0006950 GO:0006970 GO:0006996 GO:0008150 GO:0009628 GO:0009651 GO:0009987 GO:0012505 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0031201 GO:0032940 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044464 GO:0046903 GO:0048284 GO:0050896 GO:0051179 GO:0051234 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098796

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

Longin Synaptobrevin

Protein Analysis

351

Amino Acids

39.57

Weight (kDa)

5.64

Isoelectric Point (pI)

55.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
bHLH-MYC_N	PF14215	32 - 122	8.8e-14	bHLH-MYC and R2R3-MYB transcription factors N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010611)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g19450
rosa_chinensis	RchiOBHm_Chr1g0345331 RchiOBHm_Chr5g0046581 RchiOBHm_Chr5g0055411 RchiOBHm_Chr7g0228401 RchiOBHm_Chr7g0228421
rosa_laevigata	RLG00000035747
rosa_multiflora	Rmu_sc0003033.1_g000053
rosa_roxburghii	Rroxscaffold_1G00034780 Rroxscaffold_3G00249570 Rroxscaffold_4G00279960
rosa_rugosa	Rorug01G0414400 Rorug05G0229600 Rorug05G0367100
rosa_samantha	Rh1AG437900 Rh1BG394200 Rh5AG310000 Rh5AG310100 Rh5BG318400 Rh5DG328700 Rh5DG328800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	535
Acc36I	ACCTGC	1 cut(s)	535
AccB7I	CCANNNNNTGG	2 cut(s)	201, 676
AccIII	TCCGGA	1 cut(s)	871
AciI	CCGC	1 cut(s)	570
AclWI	GGATC	2 cut(s)	49, 806
AcoI	YGGCCR	2 cut(s)	286, 710
AcsI	RAATTY	4 cut(s)	258, 433, 817, 1006
AcuI	CTGAAG	5 cut(s)	57, 348, 715, 948, 1032
AfaI	GTAC	4 cut(s)	450, 914, 998, 1025
AfiI	CCNNNNNNNGG	4 cut(s)	154, 201, 585, 676
AflIII	ACRYGT	1 cut(s)	993
AjuI	GAANNNNNNNTTGG	2 cut(s)	833, 865
AluBI	AGCT	7 cut(s)	284, 406, 544, 766, 827, 858, 924
AluI	AGCT	7 cut(s)	284, 406, 544, 766, 827, 858, 924
Alw26I	GTCTC	1 cut(s)	1034
AlwI	GGATC	2 cut(s)	49, 806
Aor13HI	TCCGGA	1 cut(s)	871
AoxI	GGCC	3 cut(s)	286, 515, 710
ApeKI	GCWGC	6 cut(s)	541, 544, 572, 575, 634, 800
ApoI	RAATTY	4 cut(s)	258, 433, 817, 1006
ArsI	GACNNNNNNTTYG	4 cut(s)	323, 355, 707, 739
Asp700I	GAANNNNTTC	2 cut(s)	333, 427
AsuC2I	CCSGG	1 cut(s)	779
AsuHPI	GGTGA	4 cut(s)	543, 587, 659, 968
BaeGI	GKGCMC	1 cut(s)	739
BaeI	ACNNNNGTAYC	2 cut(s)	572, 605
BalI	TGGCCA	2 cut(s)	288, 712
BanII	GRGCYC	1 cut(s)	511
BauI	CACGAG	1 cut(s)	845
BbsI	GAAGAC	3 cut(s)	25, 151, 336
BbvI	GCAGC	6 cut(s)	531, 553, 559, 587, 621, 812
BccI	CCATC	4 cut(s)	40, 115, 670, 876
BciVI	GTATCC	1 cut(s)	600
BclI	TGATCA	2 cut(s)	241, 970
BcnI	CCSGG	1 cut(s)	779
BcoDI	GTCTC	1 cut(s)	1034
BfaI	CTAG	2 cut(s)	374, 584
BfmI	CTRYAG	1 cut(s)	573
BfuAI	ACCTGC	1 cut(s)	535
BfuI	GTATCC	1 cut(s)	600
BglI	GCCNNNNNGGC	1 cut(s)	718
BisI	GCNGC	6 cut(s)	542, 545, 573, 576, 635, 801
BlsI	GCNGC	6 cut(s)	543, 546, 574, 577, 636, 802
BmcAI	AGTACT	1 cut(s)	450
Bme1390I	CCNGG	1 cut(s)	779
BmiI	GGNNCC	1 cut(s)	310
BmrFI	CCNGG	1 cut(s)	779
BmsI	GCATC	4 cut(s)	143, 208, 539, 748
BpiI	GAAGAC	3 cut(s)	25, 151, 336
BpuEI	CTTGAG	1 cut(s)	874
BpuMI	CCSGG	1 cut(s)	779
BsaBI	GATNNNNATC	1 cut(s)	867
BsaI	GGTCTC	1 cut(s)	1034
BsaJI	CCNNGG	2 cut(s)	12, 289
BsaWI	WCCGGW	1 cut(s)	871
Bsc4I	CCNNNNNNNGG	4 cut(s)	154, 201, 585, 676
Bse118I	RCCGGY	1 cut(s)	1016
Bse1I	ACTGG	3 cut(s)	206, 446, 748
Bse8I	GATNNNNATC	1 cut(s)	867
BseAI	TCCGGA	1 cut(s)	871
BseDI	CCNNGG	2 cut(s)	12, 289
BseGI	GGATG	2 cut(s)	763, 868
BseJI	GATNNNNATC	1 cut(s)	867
BseLI	CCNNNNNNNGG	4 cut(s)	154, 201, 585, 676
BseMII	CTCAG	1 cut(s)	416
BseNI	ACTGG	3 cut(s)	206, 446, 748
BseRI	GAGGAG	4 cut(s)	477, 480, 696, 934
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	6 cut(s)	531, 553, 559, 587, 621, 812
BshFI	GGCC	3 cut(s)	288, 517, 712
BsiSI	CCGG	3 cut(s)	779, 872, 1017
BslI	CCNNNNNNNGG	4 cut(s)	154, 201, 585, 676
BsmAI	GTCTC	1 cut(s)	1034
BsnI	GGCC	3 cut(s)	288, 517, 712
Bso31I	GGTCTC	1 cut(s)	1034
Bsp1286I	GDGCHC	2 cut(s)	511, 739
Bsp13I	TCCGGA	1 cut(s)	871
Bsp1407I	TGTACA	1 cut(s)	996
Bsp143I	GATC	5 cut(s)	54, 241, 664, 811, 970
Bsp19I	CCATGG	1 cut(s)	289
BspACI	CCGC	1 cut(s)	570
BspANI	GGCC	3 cut(s)	288, 517, 712
BspCNI	CTCAG	1 cut(s)	415
BspEI	TCCGGA	1 cut(s)	871
BspLI	GGNNCC	1 cut(s)	310
BspMAI	CTGCAG	1 cut(s)	577
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	49, 806
BspQI	GCTCTTC	1 cut(s)	228
BspTNI	GGTCTC	1 cut(s)	1034
BsrFI	RCCGGY	1 cut(s)	1016
BsrGI	TGTACA	1 cut(s)	996
BsrI	ACTGG	3 cut(s)	206, 446, 748
BssAI	RCCGGY	1 cut(s)	1016
BssECI	CCNNGG	2 cut(s)	12, 289
BssMI	GATC	5 cut(s)	54, 241, 664, 811, 970
BssSI	CACGAG	1 cut(s)	845
BssT1I	CCWWGG	1 cut(s)	289
Bst2BI	CACGAG	1 cut(s)	845
Bst6I	CTCTTC	2 cut(s)	12, 228
BstAUI	TGTACA	1 cut(s)	996
BstC8I	GCNNGC	2 cut(s)	286, 936
BstDEI	CTNAG	4 cut(s)	347, 402, 787, 1048
BstDSI	CCRYGG	1 cut(s)	289
BstF5I	GGATG	2 cut(s)	763, 868
BstKTI	GATC	5 cut(s)	57, 244, 667, 814, 973
BstMAI	GTCTC	1 cut(s)	1034
BstMBI	GATC	5 cut(s)	54, 241, 664, 811, 970
BstMWI	GCNNNNNNNGC	2 cut(s)	718, 864
BstSCI	CCNGG	1 cut(s)	777
BstSFI	CTRYAG	1 cut(s)	573
BstSLI	GKGCMC	1 cut(s)	739
BstV1I	GCAGC	6 cut(s)	531, 553, 559, 587, 621, 812
BstV2I	GAAGAC	3 cut(s)	25, 151, 336
BstX2I	RGATCY	2 cut(s)	54, 811
BstYI	RGATCY	2 cut(s)	54, 811
BsuI	GTATCC	1 cut(s)	600
BsuRI	GGCC	3 cut(s)	288, 517, 712
BtgI	CCRYGG	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	763, 868
BtsIMutI	CAGTG	2 cut(s)	739, 741
BveI	ACCTGC	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	286, 936
Cfr10I	RCCGGY	1 cut(s)	1016
Csp6I	GTAC	4 cut(s)	449, 913, 997, 1024
CviAII	CATG	5 cut(s)	290, 673, 692, 901, 1036
CviQI	GTAC	4 cut(s)	449, 913, 997, 1024
DdeI	CTNAG	4 cut(s)	347, 402, 787, 1048
DpnI	GATC	5 cut(s)	56, 243, 666, 813, 972
DpnII	GATC	5 cut(s)	54, 241, 664, 811, 970
EaeI	YGGCCR	2 cut(s)	286, 710
Eam1104I	CTCTTC	2 cut(s)	12, 228
EarI	CTCTTC	2 cut(s)	12, 228
Eco130I	CCWWGG	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	511
Eco31I	GGTCTC	1 cut(s)	1034
Eco57I	CTGAAG	5 cut(s)	57, 348, 715, 948, 1032
EcoRI	GAATTC	3 cut(s)	258, 817, 1006
EcoT14I	CCWWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	5 cut(s)	293, 676, 695, 904, 1039
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FatI	CATG	5 cut(s)	289, 672, 691, 900, 1035
FauNDI	CATATG	1 cut(s)	624
FbaI	TGATCA	2 cut(s)	241, 970
Fnu4HI	GCNGC	6 cut(s)	542, 545, 573, 576, 635, 801
FokI	GGATG	2 cut(s)	770, 855
FriOI	GRGCYC	1 cut(s)	511
Fsp4HI	GCNGC	6 cut(s)	542, 545, 573, 576, 635, 801
FspBI	CTAG	2 cut(s)	374, 584
GluI	GCNGC	6 cut(s)	542, 545, 573, 576, 635, 801
HaeIII	GGCC	3 cut(s)	288, 517, 712
HapII	CCGG	3 cut(s)	779, 872, 1017
Hin1II	CATG	5 cut(s)	293, 676, 695, 904, 1039
HindIII	AAGCTT	2 cut(s)	764, 825
HinfI	GANTC	2 cut(s)	251, 368
HpaII	CCGG	3 cut(s)	779, 872, 1017
HphI	GGTGA	4 cut(s)	543, 587, 659, 968
Hpy166II	GTNNAC	1 cut(s)	997
Hpy188I	TCNGA	8 cut(s)	64, 139, 264, 816, 823, 1005, 1012, 1030
Hpy188III	TCNNGA	6 cut(s)	37, 230, 255, 845, 853, 872
Hpy8I	GTNNAC	1 cut(s)	997
HpyAV	CCTTC	6 cut(s)	81, 103, 121, 344, 558, 1054
HpyCH4IV	ACGT	1 cut(s)	993
HpyF10VI	GCNNNNNNNGC	2 cut(s)	718, 864
HpyF3I	CTNAG	4 cut(s)	347, 402, 787, 1048
HpySE526I	ACGT	1 cut(s)	993
Hsp92II	CATG	5 cut(s)	293, 676, 695, 904, 1039
Kpn2I	TCCGGA	1 cut(s)	871
Ksp22I	TGATCA	2 cut(s)	241, 970
Kzo9I	GATC	5 cut(s)	54, 241, 664, 811, 970
LguI	GCTCTTC	1 cut(s)	228
LmnI	GCTCC	1 cut(s)	921
Lsp1109I	GCAGC	6 cut(s)	531, 553, 559, 587, 621, 812
LweI	GCATC	4 cut(s)	143, 208, 539, 748
MaeI	CTAG	2 cut(s)	374, 584
MaeII	ACGT	1 cut(s)	993
MalI	GATC	5 cut(s)	56, 243, 666, 813, 972
MboI	GATC	5 cut(s)	54, 241, 664, 811, 970
MfeI	CAATTG	3 cut(s)	267, 302, 502
MflI	RGATCY	2 cut(s)	54, 811
MhlI	GDGCHC	2 cut(s)	511, 739
MlsI	TGGCCA	2 cut(s)	288, 712
MluNI	TGGCCA	2 cut(s)	288, 712
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	2 cut(s)	219, 855
Mox20I	TGGCCA	2 cut(s)	288, 712
MroI	TCCGGA	1 cut(s)	871
MroXI	GAANNNNTTC	2 cut(s)	333, 427
MscI	TGGCCA	2 cut(s)	288, 712
MslI	CAYNNNNRTG	2 cut(s)	623, 696
Msp20I	TGGCCA	2 cut(s)	288, 712
MspA1I	CMGCKG	2 cut(s)	544, 572
MspI	CCGG	3 cut(s)	779, 872, 1017
MspR9I	CCNGG	1 cut(s)	779
MunI	CAATTG	3 cut(s)	267, 302, 502
MwoI	GCNNNNNNNGC	2 cut(s)	718, 864
NciI	CCSGG	1 cut(s)	779
NcoI	CCATGG	1 cut(s)	289
NdeI	CATATG	1 cut(s)	624
NdeII	GATC	5 cut(s)	54, 241, 664, 811, 970
NlaIII	CATG	5 cut(s)	293, 676, 695, 904, 1039
NlaIV	GGNNCC	1 cut(s)	310
NmeAIII	GCCGAG	1 cut(s)	37
PaqCI	CACCTGC	1 cut(s)	535
PciSI	GCTCTTC	1 cut(s)	228
PdmI	GAANNNNTTC	2 cut(s)	333, 427
PfeI	GAWTC	1 cut(s)	368
PflMI	CCANNNNNTGG	2 cut(s)	201, 676
PkrI	GCNGC	6 cut(s)	543, 546, 574, 577, 636, 802
PleI	GAGTC	1 cut(s)	259
PpsI	GAGTC	1 cut(s)	259
PspN4I	GGNNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	577
PsuI	RGATCY	2 cut(s)	54, 811
PvuII	CAGCTG	1 cut(s)	544
RsaI	GTAC	4 cut(s)	450, 914, 998, 1025
RsaNI	GTAC	4 cut(s)	449, 913, 997, 1024
RseI	CAYNNNNRTG	2 cut(s)	623, 696
SapI	GCTCTTC	1 cut(s)	228
SatI	GCNGC	6 cut(s)	542, 545, 573, 576, 635, 801
Sau3AI	GATC	5 cut(s)	54, 241, 664, 811, 970
ScaI	AGTACT	1 cut(s)	450
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	779
SduI	GDGCHC	2 cut(s)	511, 739
SfaNI	GCATC	4 cut(s)	143, 208, 539, 748
SfcI	CTRYAG	1 cut(s)	573
SmiMI	CAYNNNNRTG	2 cut(s)	623, 696
SmlI	CTYRAG	1 cut(s)	853
SmoI	CTYRAG	1 cut(s)	853
SsiI	CCGC	1 cut(s)	570
SspMI	CTAG	2 cut(s)	374, 584
StyD4I	CCNGG	1 cut(s)	777
StyI	CCWWGG	1 cut(s)	289
TaiI	ACGT	1 cut(s)	996
TaqI	TCGA	2 cut(s)	249, 481
TatI	WGTACW	4 cut(s)	448, 912, 996, 1023
TfiI	GAWTC	1 cut(s)	368
TscAI	CASTG	2 cut(s)	739, 748
TseI	GCWGC	6 cut(s)	541, 544, 572, 575, 634, 800
TspDTI	ATGAA	4 cut(s)	201, 326, 708, 911
TspRI	CASTG	2 cut(s)	739, 748
Van91I	CCANNNNNTGG	2 cut(s)	201, 676
XapI	RAATTY	4 cut(s)	258, 433, 817, 1006
XmnI	GAANNNNTTC	2 cut(s)	333, 427
XspI	CTAG	2 cut(s)	374, 584
ZrmI	AGTACT	1 cut(s)	450

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.