Rorug01G0414400

Protein timeless homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0010611
Physical Location & Seq
Forward (+)
51834893 .. 51838710
3818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0414400.1

Sequence Viewer

Length: 660 bp
ATGGAGGAGCAACAGGAGCACGAGGTCTACGGCGGCGAGATTCCCAACGACGACGGCGAAGATGTCGACATGTCGTCCCGCGCCGACGACGACCAGGACTACAACGACGACCCTAACTCCAAGGAGCTGGAGGACATGAAGAAGAGGCTGAAGGAGATTGAGGAAGAGGCCGGCGCGCTCCGCGATATGCAGGCTAAGGTCGAGAAGGAGATGGGAGCTGTTCAAGATCCCAATGGTGGTTCTGCAAGTCAGGCAGAGAAGGAGGAGGTGGATGCTCGATCCATCTATGTTGGCAACGTCGACTATGCATGCACTCCTGAAGAAGTCCAGCAGCATTTTCAATCTTGTGGAACTGTGAACAGAGTTACGATTTTGACAGACAAGTTTGGTCAACCAAAAGGATTTGCTTACGTTGAGTTTGTTGAAGTTGATGCTGTGCAGAATGCTCTCATACTAAATGAATCAGAATTGCATGGTCGTCAATTGAAGGTCTCTGCTAAACGGACAAACGTTCCTGGACTGAAACAGTATCGAGGAAGGCGTCCTAACCCATTTTTCCGATCTAGGAGGCCCTTCATGGCTGCTGCGCCTTTCTACCCCTCGTATGGTTATGGGAGGGTTCCAAGGTTCAGACGGCCCATGCGTTACAGACCATACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIMELESS TIMELESS_C

Protein Analysis

219

Amino Acids

25.05

Weight (kDa)

5.04

Isoelectric Point (pI)

60.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 95 - 163 1.9e-16 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 27, 66, 300
AccII CGCG 3 cut(s) 81, 176, 183
AciI CCGC 3 cut(s) 33, 79, 181
AclI AACGTT 1 cut(s) 510
AclWI GGATC 2 cut(s) 221, 273
AcuI CTGAAG 2 cut(s) 170, 339
AcyI GRCGYC 1 cut(s) 541
AfiI CCNNNNNNNGG 2 cut(s) 236, 605
AflIII ACRYGT 1 cut(s) 69
AgsI TTSAA 4 cut(s) 224, 341, 425, 487
AhdI GACNNNNNGTC 1 cut(s) 73
AjnI CCWGG 2 cut(s) 93, 514
AluBI AGCT 2 cut(s) 127, 218
AluI AGCT 2 cut(s) 127, 218
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 1 cut(s) 496
AlwI GGATC 2 cut(s) 221, 273
AoxI GGCC 3 cut(s) 168, 569, 635
ApeKI GCWGC 3 cut(s) 331, 581, 584
AspLEI GCGC 4 cut(s) 83, 176, 178, 589
AspS9I GGNCC 2 cut(s) 570, 636
BauI CACGAG 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 343, 568, 571
BccI CCATC 2 cut(s) 205, 290
BceAI ACGGC 3 cut(s) 46, 70, 650
BciT130I CCWGG 2 cut(s) 95, 516
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 1 cut(s) 564
BisI GCNGC 4 cut(s) 34, 332, 582, 585
BlsI GCNGC 4 cut(s) 35, 333, 583, 586
Bme1390I CCNGG 2 cut(s) 95, 516
BmeRI GACNNNNNGTC 1 cut(s) 73
BmgT120I GGNCC 2 cut(s) 570, 636
BmiI GGNNCC 1 cut(s) 621
BmrFI CCNGG 2 cut(s) 95, 516
BmsI GCATC 2 cut(s) 262, 421
BpmI CTGGAG 1 cut(s) 149
Bpu10I CCTNAGC 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 541
BsaI GGTCTC 1 cut(s) 496
BsaJI CCNNGG 2 cut(s) 120, 623
BsaXI ACNNNNNCTCC 2 cut(s) 101, 131
Bsc4I CCNNNNNNNGG 2 cut(s) 236, 605
Bse118I RCCGGY 1 cut(s) 170
BseBI CCWGG 2 cut(s) 95, 516
BseDI CCNNGG 2 cut(s) 120, 623
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 2 cut(s) 236, 605
BsePI GCGCGC 1 cut(s) 174
BseRI GAGGAG 2 cut(s) 20, 278
BseXI GCAGC 3 cut(s) 343, 568, 571
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 3 cut(s) 81, 176, 183
BshFI GGCC 3 cut(s) 170, 571, 637
BsiHKAI GWGCWC 1 cut(s) 21
BsiSI CCGG 1 cut(s) 171
BslFI GGGAC 1 cut(s) 61
BslI CCNNNNNNNGG 2 cut(s) 236, 605
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 61
BsmI GAATGC 1 cut(s) 448
BsnI GGCC 3 cut(s) 170, 571, 637
Bso31I GGTCTC 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 21
Bsp143I GATC 3 cut(s) 226, 278, 560
BspACI CCGC 3 cut(s) 33, 79, 181
BspANI GGCC 3 cut(s) 170, 571, 637
BspFNI CGCG 3 cut(s) 81, 176, 183
BspLI GGNNCC 1 cut(s) 621
BspPI GGATC 2 cut(s) 221, 273
BspTNI GGTCTC 1 cut(s) 496
BsrFI RCCGGY 1 cut(s) 170
BssAI RCCGGY 1 cut(s) 170
BssECI CCNNGG 2 cut(s) 120, 623
BssHII GCGCGC 1 cut(s) 174
BssMI GATC 3 cut(s) 226, 278, 560
BssNI GRCGYC 1 cut(s) 541
BssSI CACGAG 1 cut(s) 20
BssT1I CCWWGG 2 cut(s) 120, 623
Bst2BI CACGAG 1 cut(s) 20
Bst2UI CCWGG 2 cut(s) 95, 516
Bst4CI ACNGT 2 cut(s) 355, 528
Bst6I CTCTTC 2 cut(s) 137, 159
BstACI GRCGYC 1 cut(s) 541
BstC8I GCNNGC 4 cut(s) 172, 176, 192, 310
BstDEI CTNAG 1 cut(s) 195
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 3 cut(s) 81, 176, 183
BstHHI GCGC 4 cut(s) 83, 176, 178, 589
BstKTI GATC 3 cut(s) 229, 281, 563
BstMAI GTCTC 1 cut(s) 496
BstMBI GATC 3 cut(s) 226, 278, 560
BstMWI GCNNNNNNNGC 3 cut(s) 16, 180, 251
BstNI CCWGG 2 cut(s) 95, 516
BstNSI RCATGY 2 cut(s) 73, 312
BstSCI CCNGG 2 cut(s) 93, 514
BstUI CGCG 3 cut(s) 81, 176, 183
BstV1I GCAGC 3 cut(s) 343, 568, 571
BstX2I RGATCY 1 cut(s) 226
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 3 cut(s) 170, 571, 637
BtsCI GGATG 1 cut(s) 277
Cac8I GCNNGC 4 cut(s) 172, 176, 192, 310
CfoI GCGC 4 cut(s) 83, 176, 178, 589
Cfr10I RCCGGY 1 cut(s) 170
Cfr13I GGNCC 2 cut(s) 570, 636
CseI GACGC 1 cut(s) 530
CviAII CATG 6 cut(s) 70, 136, 309, 473, 577, 640
CviJI RGCY 8 cut(s) 127, 148, 170, 194, 218, 571, 581, 637
CviKI_1 RGCY 8 cut(s) 127, 148, 170, 194, 218, 571, 581, 637
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 228, 280, 562
DpnII GATC 3 cut(s) 226, 278, 560
DriI GACNNNNNGTC 1 cut(s) 73
Eam1104I CTCTTC 2 cut(s) 137, 159
Eam1105I GACNNNNNGTC 1 cut(s) 73
EarI CTCTTC 2 cut(s) 137, 159
Eco130I CCWWGG 2 cut(s) 120, 623
Eco31I GGTCTC 1 cut(s) 496
Eco57I CTGAAG 2 cut(s) 170, 339
EcoO109I RGGNCCY 1 cut(s) 570
EcoRII CCWGG 2 cut(s) 93, 514
EcoT14I CCWWGG 2 cut(s) 120, 623
EcoT22I ATGCAT 1 cut(s) 310
ErhI CCWWGG 2 cut(s) 120, 623
FaeI CATG 6 cut(s) 73, 139, 312, 476, 580, 643
FaqI GGGAC 1 cut(s) 61
FatI CATG 6 cut(s) 69, 135, 308, 472, 576, 639
FauI CCCGC 1 cut(s) 86
FblI GTMKAC 3 cut(s) 27, 66, 300
Fnu4HI GCNGC 4 cut(s) 34, 332, 582, 585
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 4 cut(s) 34, 332, 582, 585
FspBI CTAG 1 cut(s) 564
GlaI GCGC 4 cut(s) 82, 175, 177, 588
GluI GCNGC 4 cut(s) 34, 332, 582, 585
GsuI CTGGAG 1 cut(s) 149
HaeIII GGCC 3 cut(s) 170, 571, 637
HapII CCGG 1 cut(s) 171
HgaI GACGC 1 cut(s) 530
HhaI GCGC 4 cut(s) 83, 176, 178, 589
Hin1I GRCGYC 1 cut(s) 541
Hin1II CATG 6 cut(s) 73, 139, 312, 476, 580, 643
Hin6I GCGC 4 cut(s) 81, 174, 176, 587
HinP1I GCGC 4 cut(s) 81, 174, 176, 587
HincII GTYRAC 3 cut(s) 67, 301, 392
HindII GTYRAC 3 cut(s) 67, 301, 392
HinfI GANTC 2 cut(s) 40, 461
HpaII CCGG 1 cut(s) 171
Hpy166II GTNNAC 5 cut(s) 28, 67, 301, 358, 392
Hpy188I TCNGA 3 cut(s) 466, 560, 632
Hpy188III TCNNGA 3 cut(s) 202, 224, 317
Hpy8I GTNNAC 5 cut(s) 28, 67, 301, 358, 392
Hpy99I CGWCG 6 cut(s) 53, 56, 89, 92, 110, 302
HpyAV CCTTC 6 cut(s) 145, 199, 253, 481, 531, 583
HpyCH4III ACNGT 2 cut(s) 355, 528
HpyCH4IV ACGT 3 cut(s) 297, 411, 510
HpyCH4V TGCA 6 cut(s) 190, 245, 308, 312, 439, 472
HpyF10VI GCNNNNNNNGC 3 cut(s) 16, 180, 251
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 3 cut(s) 297, 411, 510
Hsp92I GRCGYC 1 cut(s) 541
Hsp92II CATG 6 cut(s) 73, 139, 312, 476, 580, 643
HspAI GCGC 4 cut(s) 81, 174, 176, 587
KroI GCCGGC 1 cut(s) 170
KroNI GCCGGC 1 cut(s) 172
Kzo9I GATC 3 cut(s) 226, 278, 560
LmnI GCTCC 5 cut(s) 7, 16, 124, 183, 215
Lsp1109I GCAGC 3 cut(s) 343, 568, 571
LweI GCATC 2 cut(s) 262, 421
MaeI CTAG 1 cut(s) 564
MaeII ACGT 3 cut(s) 297, 411, 510
MaeIII GTNAC 2 cut(s) 364, 644
MalI GATC 3 cut(s) 228, 280, 562
MboI GATC 3 cut(s) 226, 278, 560
MboII GAAGA 5 cut(s) 71, 151, 154, 176, 332
MfeI CAATTG 1 cut(s) 482
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 1 cut(s) 21
MluCI AATT 2 cut(s) 467, 482
Mph1103I ATGCAT 1 cut(s) 310
MroNI GCCGGC 1 cut(s) 170
MspI CCGG 1 cut(s) 171
MspR9I CCNGG 2 cut(s) 95, 516
MunI CAATTG 1 cut(s) 482
Mva1269I GAATGC 1 cut(s) 448
MvaI CCWGG 2 cut(s) 95, 516
MvnI CGCG 3 cut(s) 81, 176, 183
MwoI GCNNNNNNNGC 3 cut(s) 16, 180, 251
NaeI GCCGGC 1 cut(s) 172
NdeII GATC 3 cut(s) 226, 278, 560
NgoMIV GCCGGC 1 cut(s) 170
NlaIII CATG 6 cut(s) 73, 139, 312, 476, 580, 643
NlaIV GGNNCC 1 cut(s) 621
NsiI ATGCAT 1 cut(s) 310
NspI RCATGY 2 cut(s) 73, 312
PaeI GCATGC 1 cut(s) 312
PauI GCGCGC 1 cut(s) 174
PciI ACATGT 1 cut(s) 69
PcsI WCGNNNNNNNCGW 3 cut(s) 54, 538, 640
PctI GAATGC 1 cut(s) 448
PdiI GCCGGC 1 cut(s) 172
PfeI GAWTC 2 cut(s) 40, 461
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 4 cut(s) 35, 333, 583, 586
PscI ACATGT 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 510
Psp6I CCWGG 2 cut(s) 93, 514
PspGI CCWGG 2 cut(s) 93, 514
PspN4I GGNNCC 1 cut(s) 621
PspPI GGNCC 2 cut(s) 570, 636
PsuI RGATCY 1 cut(s) 226
PteI GCGCGC 1 cut(s) 174
SalI GTCGAC 2 cut(s) 65, 299
SatI GCNGC 4 cut(s) 34, 332, 582, 585
Sau3AI GATC 3 cut(s) 226, 278, 560
Sau96I GGNCC 2 cut(s) 570, 636
ScrFI CCNGG 2 cut(s) 95, 516
SduI GDGCHC 1 cut(s) 21
SfaNI GCATC 2 cut(s) 262, 421
SphI GCATGC 1 cut(s) 312
Sse9I AATT 2 cut(s) 467, 482
SsiI CCGC 3 cut(s) 33, 79, 181
SspMI CTAG 1 cut(s) 564
StyD4I CCNGG 2 cut(s) 93, 514
StyI CCWWGG 2 cut(s) 120, 623
TaaI ACNGT 2 cut(s) 355, 528
TaiI ACGT 3 cut(s) 300, 414, 513
TaqI TCGA 5 cut(s) 66, 201, 277, 300, 532
TasI AATT 2 cut(s) 467, 482
TauI GCSGC 1 cut(s) 36
TfiI GAWTC 2 cut(s) 40, 461
TseI GCWGC 3 cut(s) 331, 581, 584
TspDTI ATGAA 3 cut(s) 152, 474, 565
TspGWI ACGGA 1 cut(s) 517
XceI RCATGY 2 cut(s) 73, 312
XmiI GTMKAC 3 cut(s) 27, 66, 300
XspI CTAG 1 cut(s) 564
Zsp2I ATGCAT 1 cut(s) 310
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.