Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010611

Physical Location & Seq

Genomic Coordinates Reverse (-)

51766618 .. 51770169

Gene Structure 3552 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20462

Sequence Viewer

CDS Protein Promoter (2k)

Length: 159 bp

ATGTGGGATGAACTCAAGAATATTAGGCAAGCCATAGGATTTCTGGTCATACATAAAAACCCCAAAAAGACACTTGATGAGATAAGCCATGACCTGTGCACAGTAAGTAATGTGTATGCAAGGAAGAACCGAAGAAGTAAATACTTTCAAATCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

52

Amino Acids

6.25

Weight (kDa)

9.8

Isoelectric Point (pI)

59.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010611)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g19450
rosa_chinensis	RchiOBHm_Chr1g0345331 RchiOBHm_Chr5g0046581 RchiOBHm_Chr5g0055411 RchiOBHm_Chr7g0228401 RchiOBHm_Chr7g0228421
rosa_laevigata	RLG00000035747
rosa_multiflora	Rmu_sc0003033.1_g000053
rosa_roxburghii	Rroxscaffold_1G00034780 Rroxscaffold_3G00249570 Rroxscaffold_4G00279960
rosa_rugosa	Rorug01G0414400 Rorug05G0229600 Rorug05G0367100
rosa_samantha	Rh1AG437900 Rh1BG394200 Rh5AG310000 Rh5AG310100 Rh5BG318400 Rh5DG328700 Rh5DG328800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	149
Alw21I	GWGCWC	1 cut(s)	101
Alw44I	GTGCAC	1 cut(s)	97
ApaLI	GTGCAC	1 cut(s)	97
BaeGI	GKGCMC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	101
BseGI	GGATG	1 cut(s)	13
BseSI	GKGCMC	1 cut(s)	101
BsiHKAI	GWGCWC	1 cut(s)	101
Bsp1286I	GDGCHC	1 cut(s)	101
Bst4CI	ACNGT	1 cut(s)	103
BstC8I	GCNNGC	1 cut(s)	30
BstF5I	GGATG	1 cut(s)	13
BstSLI	GKGCMC	1 cut(s)	101
BtsCI	GGATG	1 cut(s)	13
Cac8I	GCNNGC	1 cut(s)	30
CviAII	CATG	1 cut(s)	89
CviJI	RGCY	2 cut(s)	32, 87
CviKI_1	RGCY	2 cut(s)	32, 87
FaeI	CATG	1 cut(s)	92
FaiI	YATR	5 cut(s)	35, 50, 54, 90, 117
FatI	CATG	1 cut(s)	88
FokI	GGATG	1 cut(s)	20
Hin1II	CATG	1 cut(s)	92
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188III	TCNNGA	1 cut(s)	16
Hpy8I	GTNNAC	1 cut(s)	99
HpyCH4III	ACNGT	1 cut(s)	103
HpyCH4V	TGCA	2 cut(s)	99, 119
Hsp92II	CATG	1 cut(s)	92
LpnPI	CCDG	2 cut(s)	29, 107
MboII	GAAGA	2 cut(s)	136, 144
MhlI	GDGCHC	1 cut(s)	101
NlaIII	CATG	1 cut(s)	92
SduI	GDGCHC	1 cut(s)	101
SetI	ASST	1 cut(s)	96
SgeI	CNNG	7 cut(s)	28, 41, 56, 86, 101, 106, 132
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
SspI	AATATT	1 cut(s)	22
TaaI	ACNGT	1 cut(s)	103
TspDTI	ATGAA	1 cut(s)	24
VneI	GTGCAC	1 cut(s)	97
XcmI	CCANNNNNNNNNTGG	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.