Rh5DG328800

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0010611
Physical Location & Seq
Forward (+)
43255918 .. 43257804
1887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG328800.1

Sequence Viewer

Length: 369 bp
ATGGCCACGTCTGAACAGGTACCTCCATTTTTAGTTCGAAAGTATGCAGGTTCAGCTTGGGATGAACTCAAGCATATTAGGTTACATCAAAAACCCAAAAAGACACTTGATGAAATAAGCCATGACCTGTGCTCAGCAAATGCGCATTTCAGCTTCGGACCTCTGTGTCAATATCCATATGTAAGCTACTTGGATCACGGTCTTTCAGCCTATGAAATACCTAATGGCAAAGCTTGGACTATGCAATTGTTGGCTGTGGCATGTTTGGCCCTTGCGGCCAAAATAAAGGAGATTAATGCCCCACTCTACCTTGATTTACAGGTGGCTGGGTTAAAAAATTTATTCAAGGCCATTGAGAAGGAGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Cyclin_C Cyclin_N

Protein Analysis

122

Amino Acids

13.69

Weight (kDa)

7.74

Isoelectric Point (pI)

29.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 43 - 109 4.1e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 165
Acc16I TGCGCA 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 38
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AciI CCGC 1 cut(s) 275
AclWI GGATC 1 cut(s) 201
AcoI YGGCCR 2 cut(s) 3, 276
AcsI RAATTY 1 cut(s) 337
AfaI GTAC 1 cut(s) 21
AgsI TTSAA 1 cut(s) 346
AjiI CACGTC 1 cut(s) 9
AluBI AGCT 4 cut(s) 56, 153, 186, 233
AluI AGCT 4 cut(s) 56, 153, 186, 233
Alw21I GWGCWC 1 cut(s) 134
AlwI GGATC 1 cut(s) 201
AoxI GGCC 4 cut(s) 3, 267, 276, 348
ApoI RAATTY 1 cut(s) 337
AseI ATTAAT 1 cut(s) 294
Asp718I GGTACC 1 cut(s) 19
AspLEI GCGC 1 cut(s) 145
AspS9I GGNCC 2 cut(s) 158, 268
AsuII TTCGAA 1 cut(s) 37
AvaII GGWCC 1 cut(s) 158
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 19
Bbv12I GWGCWC 1 cut(s) 134
BfuAI ACCTGC 1 cut(s) 38
BglI GCCNNNNNGGC 1 cut(s) 275
BisI GCNGC 1 cut(s) 276
BlpI GCTNAGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 277
Bme18I GGWCC 1 cut(s) 158
BmgBI CACGTC 1 cut(s) 9
BmgT120I GGNCC 2 cut(s) 158, 268
BmiI GGNNCC 1 cut(s) 21
Bpu1102I GCTNAGC 1 cut(s) 133
Bpu14I TTCGAA 1 cut(s) 37
BpuEI CTTGAG 1 cut(s) 53
BseGI GGATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 147
BseYI CCCAGC 1 cut(s) 326
BshFI GGCC 4 cut(s) 5, 269, 278, 350
BshNI GGYRCC 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 134
BsnI GGCC 4 cut(s) 5, 269, 278, 350
Bsp119I TTCGAA 1 cut(s) 37
Bsp1286I GDGCHC 1 cut(s) 134
Bsp143I GATC 1 cut(s) 193
Bsp1720I GCTNAGC 1 cut(s) 133
BspACI CCGC 1 cut(s) 275
BspANI GGCC 4 cut(s) 5, 269, 278, 350
BspCNI CTCAG 1 cut(s) 146
BspLI GGNNCC 1 cut(s) 21
BspMI ACCTGC 1 cut(s) 38
BspPI GGATC 1 cut(s) 201
BspT104I TTCGAA 1 cut(s) 37
BspT107I GGYRCC 1 cut(s) 19
BssMI GATC 1 cut(s) 193
Bst4CI ACNGT 1 cut(s) 200
BstBI TTCGAA 1 cut(s) 37
BstDEI CTNAG 1 cut(s) 133
BstF5I GGATG 1 cut(s) 67
BstHHI GCGC 1 cut(s) 145
BstKTI GATC 1 cut(s) 196
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 3 cut(s) 53, 266, 275
BstNSI RCATGY 1 cut(s) 264
BsuRI GGCC 4 cut(s) 5, 269, 278, 350
BtrI CACGTC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 67
BveI ACCTGC 1 cut(s) 38
CfoI GCGC 1 cut(s) 145
Cfr13I GGNCC 2 cut(s) 158, 268
Csp6I GTAC 1 cut(s) 20
CviAII CATG 2 cut(s) 122, 261
CviQI GTAC 1 cut(s) 20
DdeI CTNAG 1 cut(s) 133
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
DrdI GACNNNNNNGTC 1 cut(s) 165
DseDI GACNNNNNNGTC 1 cut(s) 165
EaeI YGGCCR 2 cut(s) 3, 276
Eco47I GGWCC 1 cut(s) 158
FaeI CATG 2 cut(s) 125, 264
FaiI YATR 8 cut(s) 45, 75, 123, 178, 180, 213, 242, 262
FatI CATG 2 cut(s) 121, 260
FauNDI CATATG 1 cut(s) 178
Fnu4HI GCNGC 1 cut(s) 276
FokI GGATG 1 cut(s) 74
Fsp4HI GCNGC 1 cut(s) 276
FspAI RTGCGCAY 1 cut(s) 144
FspI TGCGCA 1 cut(s) 144
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 276
GsaI CCCAGC 1 cut(s) 330
HaeIII GGCC 4 cut(s) 5, 269, 278, 350
HhaI GCGC 1 cut(s) 145
Hin1II CATG 2 cut(s) 125, 264
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HindIII AAGCTT 1 cut(s) 231
Hpy188I TCNGA 2 cut(s) 13, 158
HpyAV CCTTC 1 cut(s) 352
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 1 cut(s) 8
HpyCH4V TGCA 2 cut(s) 47, 244
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 266, 275
HpyF3I CTNAG 1 cut(s) 133
HpySE526I ACGT 1 cut(s) 8
Hsp92II CATG 2 cut(s) 125, 264
HspAI GCGC 1 cut(s) 143
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 193
LpnPI CCDG 5 cut(s) 2, 33, 140, 305, 312
MaeII ACGT 1 cut(s) 8
MaeIII GTNAC 1 cut(s) 81
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MfeI CAATTG 1 cut(s) 245
MhlI GDGCHC 1 cut(s) 134
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 245, 337
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 2 cut(s) 33, 171
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 2 cut(s) 294, 332
Msp20I TGGCCA 1 cut(s) 5
MunI CAATTG 1 cut(s) 245
MwoI GCNNNNNNNGC 3 cut(s) 53, 266, 275
NdeI CATATG 1 cut(s) 178
NdeII GATC 1 cut(s) 193
NlaIII CATG 2 cut(s) 125, 264
NlaIV GGNNCC 1 cut(s) 21
NsbI TGCGCA 1 cut(s) 144
NspI RCATGY 1 cut(s) 264
NspV TTCGAA 1 cut(s) 37
PkrI GCNGC 1 cut(s) 277
PshBI ATTAAT 1 cut(s) 294
PspFI CCCAGC 1 cut(s) 326
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 158, 268
RsaI GTAC 1 cut(s) 21
RsaNI GTAC 1 cut(s) 20
SaqAI TTAA 2 cut(s) 294, 332
SatI GCNGC 1 cut(s) 276
Sau3AI GATC 1 cut(s) 193
Sau96I GGNCC 2 cut(s) 158, 268
SduI GDGCHC 1 cut(s) 134
SfiI GGCCNNNNNGGCC 1 cut(s) 275
SfuI TTCGAA 1 cut(s) 37
SinI GGWCC 1 cut(s) 158
SmlI CTYRAG 1 cut(s) 68
SmoI CTYRAG 1 cut(s) 68
Sse9I AATT 2 cut(s) 245, 337
SsiI CCGC 1 cut(s) 275
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 1 cut(s) 11
TaqI TCGA 1 cut(s) 37
TasI AATT 2 cut(s) 245, 337
TauI GCSGC 1 cut(s) 278
Tru1I TTAA 2 cut(s) 294, 332
Tru9I TTAA 2 cut(s) 294, 332
TspDTI ATGAA 3 cut(s) 78, 126, 228
VpaK11BI GGWCC 1 cut(s) 158
VspI ATTAAT 1 cut(s) 294
XapI RAATTY 1 cut(s) 337
XceI RCATGY 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.