Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010611

Physical Location & Seq

Genomic Coordinates Forward (+)

42662858 .. 42667104

Gene Structure 4247 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ32457

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGGAGATTTTCTGTGGATTACAGAAGGTTGGAACTGGGTTTCTTTGTTTGTATGCATTCCTGTATTGTTCTTTGTTTCCCCTAAACGCATGCAATGAAAATGAAATCGTAAATAGGCACTCCAAGGCCCTTGAAAATAAAGAGATGCATAGAATGAAATTAACTTCAAACATTTTAATGTTAATCTTTACAGTCATTTTCATTGCTAAGATTCCAGATTTTGGACTTCGCATTGCAGAAAGACTGTCCTTATGGACTAAGCAAGTAAGAGTTAGCTCTGGGAATGGGATGCCTCTTGGAGATGGCCATATCTGGAGAAAATATGGGCAGAAGGAAATTCTAGGAGCCAAATATCCCAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000302 GO:0001067 GO:0001101 GO:0002376 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007275 GO:0007568 GO:0008150 GO:0009507 GO:0009536 GO:0009605 GO:0009607 GO:0009617 GO:0009636 GO:0009719 GO:0009725 GO:0009751 GO:0009814 GO:0009816 GO:0009889 GO:0009891 GO:0009893 GO:0010033 GO:0010035 GO:0010150 GO:0010193 GO:0010200 GO:0010243 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042542 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044212 GO:0044424 GO:0044444 GO:0044464 GO:0045087 GO:0045893 GO:0045935 GO:0046677 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048583 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051704 GO:0051707 GO:0060255 GO:0065007 GO:0080090 GO:0080134 GO:0090693 GO:0097159 GO:0098542 GO:0099402 GO:0140110 GO:1901363 GO:1901698 GO:1901700 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

WRKY

Protein Analysis

120

Amino Acids

13.75

Weight (kDa)

9.47

Isoelectric Point (pI)

44.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WRKY	PF03106	101 - 120	8.6e-06	WRKY DNA -binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0010611)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g19450
rosa_chinensis	RchiOBHm_Chr1g0345331 RchiOBHm_Chr5g0046581 RchiOBHm_Chr5g0055411 RchiOBHm_Chr7g0228401 RchiOBHm_Chr7g0228421
rosa_laevigata	RLG00000035747
rosa_multiflora	Rmu_sc0003033.1_g000053
rosa_roxburghii	Rroxscaffold_1G00034780 Rroxscaffold_3G00249570 Rroxscaffold_4G00279960
rosa_rugosa	Rorug01G0414400 Rorug05G0229600 Rorug05G0367100
rosa_samantha	Rh1AG437900 Rh1BG394200 Rh5AG310000 Rh5AG310100 Rh5BG318400 Rh5DG328700 Rh5DG328800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	221
AcoI	YGGCCR	1 cut(s)	304
AcsI	RAATTY	1 cut(s)	336
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	134, 168
AjnI	CCWGG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	276
AluI	AGCT	1 cut(s)	276
AoxI	GGCC	2 cut(s)	126, 304
ApoI	RAATTY	1 cut(s)	336
AspS9I	GGNCC	1 cut(s)	127
BalI	TGGCCA	1 cut(s)	306
BccI	CCATC	1 cut(s)	296
BciT130I	CCWGG	1 cut(s)	358
BfaI	CTAG	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	1 cut(s)	346
BmrFI	CCNGG	1 cut(s)	358
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	135, 279
BmuI	ACTGGG	1 cut(s)	45
BpmI	CTGGAG	1 cut(s)	334
BsaJI	CCNNGG	2 cut(s)	123, 356
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	1 cut(s)	40
Bse3DI	GCAATG	3 cut(s)	100, 201, 231
BseBI	CCWGG	1 cut(s)	358
BseDI	CCNNGG	2 cut(s)	123, 356
BseGI	GGATG	1 cut(s)	294
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	3 cut(s)	100, 201, 231
BseNI	ACTGG	1 cut(s)	40
BshFI	GGCC	2 cut(s)	128, 306
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	56
BsnI	GGCC	2 cut(s)	128, 306
BspANI	GGCC	2 cut(s)	128, 306
BspLI	GGNNCC	1 cut(s)	346
BsrDI	GCAATG	3 cut(s)	100, 201, 231
BsrI	ACTGG	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	123, 356
BssT1I	CCWWGG	1 cut(s)	123
Bst2UI	CCWGG	1 cut(s)	358
Bst4CI	ACNGT	2 cut(s)	193, 246
BstC8I	GCNNGC	1 cut(s)	91
BstDEI	CTNAG	2 cut(s)	207, 258
BstF5I	GGATG	1 cut(s)	294
BstNI	CCWGG	1 cut(s)	358
BstNSI	RCATGY	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	356
BsuRI	GGCC	2 cut(s)	128, 306
BtsCI	GGATG	1 cut(s)	294
Cac8I	GCNNGC	1 cut(s)	91
Cfr13I	GGNCC	1 cut(s)	127
CviAII	CATG	1 cut(s)	90
CviJI	RGCY	4 cut(s)	128, 276, 306, 347
CviKI_1	RGCY	4 cut(s)	128, 276, 306, 347
DdeI	CTNAG	2 cut(s)	207, 258
EaeI	YGGCCR	1 cut(s)	304
Eco130I	CCWWGG	1 cut(s)	123
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	356
EcoT14I	CCWWGG	1 cut(s)	123
EcoT22I	ATGCAT	2 cut(s)	58, 150
ErhI	CCWWGG	1 cut(s)	123
FaeI	CATG	1 cut(s)	93
FaiI	YATR	6 cut(s)	54, 91, 150, 253, 309, 324
FatI	CATG	1 cut(s)	89
FokI	GGATG	1 cut(s)	301
FspBI	CTAG	1 cut(s)	341
GsuI	CTGGAG	1 cut(s)	334
HaeIII	GGCC	2 cut(s)	128, 306
Hin1II	CATG	1 cut(s)	93
HinfI	GANTC	1 cut(s)	211
Hpy188III	TCNNGA	2 cut(s)	215, 313
HpyAV	CCTTC	2 cut(s)	19, 325
HpyCH4III	ACNGT	2 cut(s)	193, 246
HpyCH4V	TGCA	4 cut(s)	56, 93, 148, 236
HpyF3I	CTNAG	2 cut(s)	207, 258
Hsp92II	CATG	1 cut(s)	93
LmnI	GCTCC	1 cut(s)	344
LpnPI	CCDG	6 cut(s)	21, 74, 228, 264, 298, 343
LweI	GCATC	2 cut(s)	135, 279
MaeI	CTAG	1 cut(s)	341
MlsI	TGGCCA	1 cut(s)	306
MluCI	AATT	2 cut(s)	158, 336
MluNI	TGGCCA	1 cut(s)	306
MmeI	TCCRAC	1 cut(s)	10
MnlI	CCTC	1 cut(s)	303
Mox20I	TGGCCA	1 cut(s)	306
Mph1103I	ATGCAT	2 cut(s)	58, 150
MscI	TGGCCA	1 cut(s)	306
MseI	TTAA	3 cut(s)	161, 176, 182
MslI	CAYNNNNRTG	1 cut(s)	176
Msp20I	TGGCCA	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	358
Mva1269I	GAATGC	1 cut(s)	56
MvaI	CCWGG	1 cut(s)	358
NlaIII	CATG	1 cut(s)	93
NlaIV	GGNNCC	1 cut(s)	346
NsiI	ATGCAT	2 cut(s)	58, 150
NspI	RCATGY	1 cut(s)	93
PaeI	GCATGC	1 cut(s)	93
PctI	GAATGC	1 cut(s)	56
PfeI	GAWTC	1 cut(s)	211
PflMI	CCANNNNNTGG	1 cut(s)	221
Psp6I	CCWGG	1 cut(s)	356
PspGI	CCWGG	1 cut(s)	356
PspN4I	GGNNCC	1 cut(s)	346
PspPI	GGNCC	1 cut(s)	127
RseI	CAYNNNNRTG	1 cut(s)	176
SaqAI	TTAA	3 cut(s)	161, 176, 182
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	1 cut(s)	358
SetI	ASST	3 cut(s)	30, 278, 362
SfaNI	GCATC	2 cut(s)	135, 279
SmiMI	CAYNNNNRTG	1 cut(s)	176
SphI	GCATGC	1 cut(s)	93
Sse9I	AATT	2 cut(s)	158, 336
SspMI	CTAG	1 cut(s)	341
StyD4I	CCNGG	1 cut(s)	356
StyI	CCWWGG	1 cut(s)	123
TaaI	ACNGT	2 cut(s)	193, 246
TasI	AATT	2 cut(s)	158, 336
TfiI	GAWTC	1 cut(s)	211
Tru1I	TTAA	3 cut(s)	161, 176, 182
Tru9I	TTAA	3 cut(s)	161, 176, 182
TspDTI	ATGAA	4 cut(s)	111, 117, 170, 190
Van91I	CCANNNNNTGG	1 cut(s)	221
XapI	RAATTY	1 cut(s)	336
XceI	RCATGY	1 cut(s)	93
XspI	CTAG	1 cut(s)	341
Zsp2I	ATGCAT	2 cut(s)	58, 150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.