Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0010611

Physical Location & Seq

Genomic Coordinates Forward (+)

58424410 .. 58425885

Gene Structure 1476 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33242

Sequence Viewer

CDS Protein Promoter (2k)

Length: 123 bp

ATGCAATTGTTGGTTGTGGCATGTTTGTCCCTTGCAGCCAAAATGGAGGAGATTAATGTCCCAATCTCCCTTGATTTACAGGAATTGACTTCTTGGAATTTAAACATTAAAATGTTGCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Cyclin_C Cyclin_N

Protein Analysis

40

Amino Acids

4.51

Weight (kDa)

4.41

Isoelectric Point (pI)

90.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cyclin_N	PF00134	1 - 31	3e-06	Cyclin, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0010611)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g19450
rosa_chinensis	RchiOBHm_Chr1g0345331 RchiOBHm_Chr5g0046581 RchiOBHm_Chr5g0055411 RchiOBHm_Chr7g0228401 RchiOBHm_Chr7g0228421
rosa_laevigata	RLG00000035747
rosa_multiflora	Rmu_sc0003033.1_g000053
rosa_roxburghii	Rroxscaffold_1G00034780 Rroxscaffold_3G00249570 Rroxscaffold_4G00279960
rosa_rugosa	Rorug01G0414400 Rorug05G0229600 Rorug05G0367100
rosa_samantha	Rh1AG437900 Rh1BG394200 Rh5AG310000 Rh5AG310100 Rh5BG318400 Rh5DG328700 Rh5DG328800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	35
ApoI	RAATTY	1 cut(s)	97
AseI	ATTAAT	1 cut(s)	54
BbvI	GCAGC	1 cut(s)	47
BisI	GCNGC	1 cut(s)	36
BlsI	GCNGC	1 cut(s)	37
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	1 cut(s)	47
BslFI	GGGAC	2 cut(s)	13, 44
BsmFI	GGGAC	2 cut(s)	13, 44
BstNSI	RCATGY	1 cut(s)	24
BstV1I	GCAGC	1 cut(s)	47
CviAII	CATG	1 cut(s)	21
CviJI	RGCY	1 cut(s)	38
CviKI_1	RGCY	1 cut(s)	38
DraI	TTTAAA	1 cut(s)	102
FaeI	CATG	1 cut(s)	24
FaiI	YATR	1 cut(s)	22
FaqI	GGGAC	2 cut(s)	13, 44
FatI	CATG	1 cut(s)	20
Fnu4HI	GCNGC	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	36
GluI	GCNGC	1 cut(s)	36
Hin1II	CATG	1 cut(s)	24
HpyCH4V	TGCA	3 cut(s)	4, 35, 118
Hsp92II	CATG	1 cut(s)	24
LpnPI	CCDG	1 cut(s)	65
Lsp1109I	GCAGC	1 cut(s)	47
MfeI	CAATTG	1 cut(s)	5
MluCI	AATT	3 cut(s)	5, 83, 97
MnlI	CCTC	1 cut(s)	40
MseI	TTAA	3 cut(s)	54, 101, 108
MslI	CAYNNNNRTG	1 cut(s)	110
MunI	CAATTG	1 cut(s)	5
NlaIII	CATG	1 cut(s)	24
NspI	RCATGY	1 cut(s)	24
PkrI	GCNGC	1 cut(s)	37
PshBI	ATTAAT	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	3 cut(s)	54, 101, 108
SatI	GCNGC	1 cut(s)	36
SgeI	CNNG	5 cut(s)	33, 44, 83, 92, 105
SmiMI	CAYNNNNRTG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	5, 83, 97
TasI	AATT	3 cut(s)	5, 83, 97
Tru1I	TTAA	3 cut(s)	54, 101, 108
Tru9I	TTAA	3 cut(s)	54, 101, 108
TseI	GCWGC	1 cut(s)	35
VspI	ATTAAT	1 cut(s)	54
XapI	RAATTY	1 cut(s)	97
XceI	RCATGY	1 cut(s)	24

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.