Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003033.1

Orthogroup ID

OG0010611

Physical Location & Seq

Genomic Coordinates Reverse (-)

217349 .. 217905

Gene Structure 557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003033.1_g000053.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

atgcggtatgcaggttcagcttgggatgaactcaagcctattaggcaagccattggattcctggtcatgcatcaaaaacccaaaaagacacttgatgaaataagccaagacctgtgcccagtcctcagtatacagcagctatatcgtatcagtacgatgtatggggatgacaaatatggcacacacagcgtgcccttggttgtaagtttctatggataccattactcaactaggttcgagtcatcttcgtcacatggcttcctttcccagtgggtgatgagatggaattggttggccaagctgttggaagtcatgtggcttggcctgaggagcttgttattcgaagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000146 GO:0000166 GO:0000331 GO:0000902 GO:0000904 GO:0003006 GO:0003674 GO:0003774 GO:0003779 GO:0003824 GO:0005488 GO:0005515 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005856 GO:0006928 GO:0006996 GO:0007010 GO:0007015 GO:0008092 GO:0008144 GO:0008150 GO:0009653 GO:0009826 GO:0009856 GO:0009860 GO:0009932 GO:0009987 GO:0015629 GO:0016043 GO:0016049 GO:0016459 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017076 GO:0017111 GO:0022414 GO:0030029 GO:0030036 GO:0030048 GO:0030154 GO:0030554 GO:0030898 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032989 GO:0032991 GO:0033275 GO:0035639 GO:0036094 GO:0040007 GO:0042623 GO:0042641 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043531 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0044706 GO:0044877 GO:0048468 GO:0048588 GO:0048589 GO:0048856 GO:0048868 GO:0048869 GO:0051015 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051656 GO:0051704 GO:0060560 GO:0070252 GO:0071840 GO:0097159 GO:0097367 GO:0097435 GO:0097708 GO:0140027 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DIL IQ Myosin_N Myosin_head

Protein Analysis

116

Amino Acids

13.64

Weight (kDa)

7.88

Isoelectric Point (pI)

51.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010611)

Species	Orthologous Gene IDs
pyrus_communis	pycom16g19450
rosa_chinensis	RchiOBHm_Chr1g0345331 RchiOBHm_Chr5g0046581 RchiOBHm_Chr5g0055411 RchiOBHm_Chr7g0228401 RchiOBHm_Chr7g0228421
rosa_laevigata	RLG00000035747
rosa_multiflora	Rmu_sc0003033.1_g000053
rosa_roxburghii	Rroxscaffold_1G00034780 Rroxscaffold_3G00249570 Rroxscaffold_4G00279960
rosa_rugosa	Rorug01G0414400 Rorug05G0229600 Rorug05G0367100
rosa_samantha	Rh1AG437900 Rh1BG394200 Rh5AG310000 Rh5AG310100 Rh5BG318400 Rh5DG328700 Rh5DG328800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	2
AccI	GTMKAC	1 cut(s)	130
AciI	CCGC	1 cut(s)	4
AcoI	YGGCCR	1 cut(s)	294
AdeI	CACNNNGTG	1 cut(s)	190
AfaI	GTAC	1 cut(s)	154
AjnI	CCWGG	1 cut(s)	60
AluBI	AGCT	4 cut(s)	20, 139, 301, 333
AluI	AGCT	4 cut(s)	20, 139, 301, 333
AoxI	GGCC	2 cut(s)	294, 322
ApeKI	GCWGC	1 cut(s)	136
AsuHPI	GGTGA	1 cut(s)	286
AsuII	TTCGAA	1 cut(s)	342
AxyI	CCTNAGG	1 cut(s)	326
BaeGI	GKGCMC	2 cut(s)	119, 195
BalI	TGGCCA	1 cut(s)	296
BbvI	GCAGC	1 cut(s)	148
BccI	CCATC	1 cut(s)	276
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BciT130I	CCWGG	1 cut(s)	62
BciVI	GTATCC	1 cut(s)	209
BfaI	CTAG	1 cut(s)	231
BfuAI	ACCTGC	1 cut(s)	2
BfuI	GTATCC	1 cut(s)	209
BglI	GCCNNNNNGGC	1 cut(s)	43
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
Bme1390I	CCNGG	1 cut(s)	62
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	2 cut(s)	113, 262
BmsI	GCATC	1 cut(s)	79
BmuI	ACTGGG	2 cut(s)	113, 262
Bpu14I	TTCGAA	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	17
BsaJI	CCNNGG	1 cut(s)	195
Bse1I	ACTGG	2 cut(s)	119, 268
Bse21I	CCTNAGG	1 cut(s)	326
BseBI	CCWGG	1 cut(s)	62
BseDI	CCNNGG	1 cut(s)	195
BseGI	GGATG	2 cut(s)	31, 172
BseMII	CTCAG	2 cut(s)	139, 317
BseNI	ACTGG	2 cut(s)	119, 268
BseRI	GAGGAG	1 cut(s)	343
BseSI	GKGCMC	2 cut(s)	119, 195
BseXI	GCAGC	1 cut(s)	148
BshFI	GGCC	2 cut(s)	296, 324
BsnI	GGCC	2 cut(s)	296, 324
Bsp119I	TTCGAA	1 cut(s)	342
Bsp1286I	GDGCHC	2 cut(s)	119, 195
BspACI	CCGC	1 cut(s)	4
BspANI	GGCC	2 cut(s)	296, 324
BspCNI	CTCAG	2 cut(s)	138, 318
BspMI	ACCTGC	1 cut(s)	2
BspT104I	TTCGAA	1 cut(s)	342
BsrI	ACTGG	2 cut(s)	119, 268
BssECI	CCNNGG	1 cut(s)	195
BssNAI	GTATAC	1 cut(s)	131
BssT1I	CCWWGG	1 cut(s)	195
Bst1107I	GTATAC	1 cut(s)	131
Bst2UI	CCWGG	1 cut(s)	62
Bst6I	CTCTTC	1 cut(s)	339
BstBI	TTCGAA	1 cut(s)	342
BstC8I	GCNNGC	2 cut(s)	48, 191
BstDEI	CTNAG	2 cut(s)	125, 326
BstF5I	GGATG	2 cut(s)	31, 172
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 43, 186, 330
BstNI	CCWGG	1 cut(s)	62
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	2 cut(s)	119, 195
BstV1I	GCAGC	1 cut(s)	148
BstXI	CCANNNNNNTGG	1 cut(s)	304
BstZ17I	GTATAC	1 cut(s)	131
Bsu36I	CCTNAGG	1 cut(s)	326
BsuI	GTATCC	1 cut(s)	209
BsuRI	GGCC	2 cut(s)	296, 324
BtsCI	GGATG	2 cut(s)	31, 172
BtsIMutI	CAGTG	1 cut(s)	275
BveI	ACCTGC	1 cut(s)	2
Cac8I	GCNNGC	2 cut(s)	48, 191
Csp6I	GTAC	1 cut(s)	153
CviAII	CATG	3 cut(s)	67, 254, 313
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	125, 326
DraIII	CACNNNGTG	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	339
EarI	CTCTTC	1 cut(s)	339
Eco130I	CCWWGG	1 cut(s)	195
Eco81I	CCTNAGG	1 cut(s)	326
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	70, 257, 316
FaiI	YATR	9 cut(s)	9, 68, 131, 142, 162, 177, 213, 255, 314
FatI	CATG	3 cut(s)	66, 253, 312
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	137
FokI	GGATG	2 cut(s)	38, 179
Fsp4HI	GCNGC	1 cut(s)	137
FspBI	CTAG	1 cut(s)	231
GluI	GCNGC	1 cut(s)	137
HaeIII	GGCC	2 cut(s)	296, 324
Hin1II	CATG	3 cut(s)	70, 257, 316
HinfI	GANTC	2 cut(s)	57, 239
HphI	GGTGA	1 cut(s)	286
Hpy166II	GTNNAC	1 cut(s)	131
Hpy8I	GTNNAC	1 cut(s)	131
HpyCH4V	TGCA	2 cut(s)	11, 70
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 43, 186, 330
HpyF3I	CTNAG	2 cut(s)	125, 326
Hsp92II	CATG	3 cut(s)	70, 257, 316
LmnI	GCTCC	1 cut(s)	330
LpnPI	CCDG	6 cut(s)	47, 74, 125, 132, 281, 338
Lsp1109I	GCAGC	1 cut(s)	148
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	231
MaeIII	GTNAC	1 cut(s)	249
MboII	GAAGA	1 cut(s)	237
MhlI	GDGCHC	2 cut(s)	119, 195
MlsI	TGGCCA	1 cut(s)	296
MluCI	AATT	1 cut(s)	286
MluNI	TGGCCA	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	248
MmeI	TCCRAC	1 cut(s)	285
MnlI	CCTC	2 cut(s)	134, 321
Mox20I	TGGCCA	1 cut(s)	296
Mph1103I	ATGCAT	1 cut(s)	72
MscI	TGGCCA	1 cut(s)	296
Msp20I	TGGCCA	1 cut(s)	296
MspR9I	CCNGG	1 cut(s)	62
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	4 cut(s)	17, 43, 186, 330
NlaIII	CATG	3 cut(s)	70, 257, 316
NmuCI	GTSAC	1 cut(s)	249
NsiI	ATGCAT	1 cut(s)	72
NspV	TTCGAA	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	57
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	247
PpsI	GAGTC	1 cut(s)	247
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
SatI	GCNGC	1 cut(s)	137
SchI	GAGTC	1 cut(s)	248
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	2 cut(s)	119, 195
SetI	ASST	7 cut(s)	16, 22, 114, 141, 236, 303, 335
SfaNI	GCATC	1 cut(s)	79
SfuI	TTCGAA	1 cut(s)	342
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	286
SsiI	CCGC	1 cut(s)	4
SspMI	CTAG	1 cut(s)	231
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	1 cut(s)	195
TaqI	TCGA	2 cut(s)	237, 342
TasI	AATT	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	57
TscAI	CASTG	1 cut(s)	275
TseFI	GTSAC	1 cut(s)	249
TseI	GCWGC	1 cut(s)	136
Tsp45I	GTSAC	1 cut(s)	249
TspDTI	ATGAA	2 cut(s)	42, 111
TspRI	CASTG	1 cut(s)	275
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	130
XspI	CTAG	1 cut(s)	231
Zsp2I	ATGCAT	1 cut(s)	72

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.