Rh1BG394200

Protein timeless homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0010611
Physical Location & Seq
Reverse (-)
51941835 .. 51944457
2623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG394200.1

Sequence Viewer

Length: 588 bp
ATGGCCACATCTGAACAGGTACCTCCATTTTCAGTTCCAAAGCCGGATACAGAGATAGAGCTGAAGATTCAAATTACTGAAGCAAATTCAGTTTATAGTGTTTCTAAGAAGTCAAGGAAGAGGAGGAAGAGGAGAAAACTGAGTGAGAAGGAAACAGAAAATAAGCTCTCAGGAGAGCATGATACCGTTCAGAAAGAAACTGACATCTCCAATGGTGAACAAGCAACAGATATAAGTGTAACTGAGAAGAGAAGCCTAGACACGAGTTCTAATGGGAAACAAGACGTCAGCATCCCTGGCCAACCTGATGAAGGCAAAAACTCTCTGTTGGGGACAGAAAACTTCCCAGGCAGTCAGGCACAGTTAGATCACAAAAATTCTGGTGATGCGAATGGTGATCTTTGTTATAGTACAGGTGACTCTTCTGGTGATGAGCAAGTAGCTGCAACTGCCGAAGTTGATTTTAAGGTGTCAAGTTTGGTTTCTGCTTTTTCAAACAACAGCATCATCCAGAAATTGTGTTGGTTGCTTAAGTTCTGTAAGAGTAACTTGACCAGAACAAATCACTACATAGTATGCATGTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TIMELESS TIMELESS_C

Protein Analysis

195

Amino Acids

21.42

Weight (kDa)

5.7

Isoelectric Point (pI)

41.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 288
Acc65I GGTACC 1 cut(s) 19
AccB1I GGYRCC 1 cut(s) 19
AcoI YGGCCR 2 cut(s) 3, 298
AcsI RAATTY 2 cut(s) 85, 376
AcuI CTGAAG 2 cut(s) 83, 99
AcyI GRCGYC 1 cut(s) 285
AfaI GTAC 2 cut(s) 21, 412
AfiI CCNNNNNNNGG 1 cut(s) 311
AflII CTTAAG 1 cut(s) 530
AgsI TTSAA 2 cut(s) 71, 495
AjnI CCWGG 2 cut(s) 295, 346
AluBI AGCT 3 cut(s) 61, 166, 443
AluI AGCT 3 cut(s) 61, 166, 443
AoxI GGCC 2 cut(s) 3, 298
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 2 cut(s) 85, 376
Asp718I GGTACC 1 cut(s) 19
AsuHPI GGTGA 5 cut(s) 227, 395, 407, 428, 440
BalI TGGCCA 2 cut(s) 5, 300
BanI GGYRCC 1 cut(s) 19
BauI CACGAG 1 cut(s) 262
BbvI GCAGC 1 cut(s) 430
BciT130I CCWGG 2 cut(s) 297, 348
BciVI GTATCC 1 cut(s) 40
BfaI CTAG 1 cut(s) 257
BfrI CTTAAG 1 cut(s) 530
BfuI GTATCC 1 cut(s) 40
BisI GCNGC 1 cut(s) 444
BlsI GCNGC 1 cut(s) 445
Bme1390I CCNGG 2 cut(s) 297, 348
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 2 cut(s) 297, 348
BmsI GCATC 3 cut(s) 300, 376, 513
BsaHI GRCGYC 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 295, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 311
BseBI CCWGG 2 cut(s) 297, 348
BseDI CCNNGG 2 cut(s) 295, 346
BseGI GGATG 2 cut(s) 291, 507
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMII CTCAG 3 cut(s) 131, 183, 234
BseRI GAGGAG 2 cut(s) 136, 145
BseXI GCAGC 1 cut(s) 430
BshFI GGCC 2 cut(s) 5, 300
BshNI GGYRCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 44
BslFI GGGAC 1 cut(s) 346
BslI CCNNNNNNNGG 1 cut(s) 311
BsmFI GGGAC 1 cut(s) 346
BsnI GGCC 2 cut(s) 5, 300
Bsp143I GATC 2 cut(s) 367, 397
BspANI GGCC 2 cut(s) 5, 300
BspCNI CTCAG 3 cut(s) 132, 182, 235
BspLI GGNNCC 1 cut(s) 21
BspT107I GGYRCC 1 cut(s) 19
BspTI CTTAAG 1 cut(s) 530
BssECI CCNNGG 2 cut(s) 295, 346
BssMI GATC 2 cut(s) 367, 397
BssNI GRCGYC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 262
Bst2BI CACGAG 1 cut(s) 262
Bst2UI CCWGG 2 cut(s) 297, 348
Bst4CI ACNGT 2 cut(s) 187, 363
Bst6I CTCTTC 4 cut(s) 113, 122, 242, 427
BstACI GRCGYC 1 cut(s) 285
BstAFI CTTAAG 1 cut(s) 530
BstDEI CTNAG 4 cut(s) 105, 140, 169, 243
BstENI CCTNNNNNAGG 1 cut(s) 309
BstF5I GGATG 2 cut(s) 291, 507
BstKTI GATC 2 cut(s) 370, 400
BstMBI GATC 2 cut(s) 367, 397
BstMWI GCNNNNNNNGC 2 cut(s) 297, 449
BstNI CCWGG 2 cut(s) 297, 348
BstNSI RCATGY 1 cut(s) 583
BstSCI CCNGG 2 cut(s) 295, 346
BstV1I GCAGC 1 cut(s) 430
BsuI GTATCC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 5, 300
BtsCI GGATG 2 cut(s) 291, 507
Csp6I GTAC 2 cut(s) 20, 411
CviAII CATG 2 cut(s) 179, 580
CviJI RGCY 7 cut(s) 5, 43, 61, 166, 255, 300, 443
CviKI_1 RGCY 7 cut(s) 5, 43, 61, 166, 255, 300, 443
CviQI GTAC 2 cut(s) 20, 411
DdeI CTNAG 4 cut(s) 105, 140, 169, 243
DpnI GATC 2 cut(s) 369, 399
DpnII GATC 2 cut(s) 367, 397
EaeI YGGCCR 2 cut(s) 3, 298
Eam1104I CTCTTC 4 cut(s) 113, 122, 242, 427
EarI CTCTTC 4 cut(s) 113, 122, 242, 427
Eco57I CTGAAG 2 cut(s) 83, 99
EcoNI CCTNNNNNAGG 1 cut(s) 309
EcoRII CCWGG 2 cut(s) 295, 346
EcoT22I ATGCAT 1 cut(s) 581
FaeI CATG 2 cut(s) 182, 583
FaiI YATR 7 cut(s) 96, 180, 233, 408, 572, 577, 581
FalI AAGNNNNNCTT 2 cut(s) 533, 565
FaqI GGGAC 1 cut(s) 346
FatI CATG 2 cut(s) 178, 579
Fnu4HI GCNGC 1 cut(s) 444
FokI GGATG 2 cut(s) 278, 494
Fsp4HI GCNGC 1 cut(s) 444
FspBI CTAG 1 cut(s) 257
GluI GCNGC 1 cut(s) 444
HaeIII GGCC 2 cut(s) 5, 300
HapII CCGG 1 cut(s) 44
Hin1I GRCGYC 1 cut(s) 285
Hin1II CATG 2 cut(s) 182, 583
HinfI GANTC 2 cut(s) 67, 419
HpaII CCGG 1 cut(s) 44
HphI GGTGA 5 cut(s) 227, 395, 407, 428, 440
Hpy166II GTNNAC 1 cut(s) 218
Hpy188I TCNGA 2 cut(s) 13, 192
Hpy188III TCNNGA 2 cut(s) 171, 511
Hpy8I GTNNAC 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 142, 305
HpyCH4III ACNGT 2 cut(s) 187, 363
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 2 cut(s) 446, 579
HpyF10VI GCNNNNNNNGC 2 cut(s) 297, 449
HpyF3I CTNAG 4 cut(s) 105, 140, 169, 243
HpySE526I ACGT 1 cut(s) 285
Hsp92I GRCGYC 1 cut(s) 285
Hsp92II CATG 2 cut(s) 182, 583
KpnI GGTACC 1 cut(s) 23
Kzo9I GATC 2 cut(s) 367, 397
Lsp1109I GCAGC 1 cut(s) 430
LweI GCATC 3 cut(s) 300, 376, 513
MaeI CTAG 1 cut(s) 257
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 3 cut(s) 238, 416, 545
MalI GATC 2 cut(s) 369, 399
MboI GATC 2 cut(s) 367, 397
MboII GAAGA 5 cut(s) 76, 130, 139, 259, 414
MlsI TGGCCA 2 cut(s) 5, 300
MluCI AATT 4 cut(s) 72, 85, 376, 515
MluNI TGGCCA 2 cut(s) 5, 300
MlyI GAGTC 1 cut(s) 413
MnlI CCTC 4 cut(s) 33, 114, 117, 123
Mox20I TGGCCA 2 cut(s) 5, 300
Mph1103I ATGCAT 1 cut(s) 581
MscI TGGCCA 2 cut(s) 5, 300
MseI TTAA 2 cut(s) 465, 531
Msp20I TGGCCA 2 cut(s) 5, 300
MspCI CTTAAG 1 cut(s) 530
MspI CCGG 1 cut(s) 44
MspR9I CCNGG 2 cut(s) 297, 348
MvaI CCWGG 2 cut(s) 297, 348
MwoI GCNNNNNNNGC 2 cut(s) 297, 449
NdeII GATC 2 cut(s) 367, 397
NlaIII CATG 2 cut(s) 182, 583
NlaIV GGNNCC 1 cut(s) 21
NmuCI GTSAC 1 cut(s) 416
NsiI ATGCAT 1 cut(s) 581
NspI RCATGY 1 cut(s) 583
PfeI GAWTC 1 cut(s) 67
PkrI GCNGC 1 cut(s) 445
PleI GAGTC 1 cut(s) 413
PpsI GAGTC 1 cut(s) 413
Psp6I CCWGG 2 cut(s) 295, 346
PspGI CCWGG 2 cut(s) 295, 346
PspN4I GGNNCC 1 cut(s) 21
RsaI GTAC 2 cut(s) 21, 412
RsaNI GTAC 2 cut(s) 20, 411
SaqAI TTAA 2 cut(s) 465, 531
SatI GCNGC 1 cut(s) 444
Sau3AI GATC 2 cut(s) 367, 397
SchI GAGTC 1 cut(s) 413
ScrFI CCNGG 2 cut(s) 297, 348
SetI ASST 9 cut(s) 21, 25, 63, 168, 288, 307, 418, 445, 471
SfaNI GCATC 3 cut(s) 300, 376, 513
SmlI CTYRAG 1 cut(s) 530
SmoI CTYRAG 1 cut(s) 530
Sse9I AATT 4 cut(s) 72, 85, 376, 515
SspMI CTAG 1 cut(s) 257
StyD4I CCNGG 2 cut(s) 295, 346
TaaI ACNGT 2 cut(s) 187, 363
TaiI ACGT 1 cut(s) 288
TasI AATT 4 cut(s) 72, 85, 376, 515
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 1 cut(s) 67
Tru1I TTAA 2 cut(s) 465, 531
Tru9I TTAA 2 cut(s) 465, 531
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 1 cut(s) 324
Vha464I CTTAAG 1 cut(s) 530
XagI CCTNNNNNAGG 1 cut(s) 309
XapI RAATTY 2 cut(s) 85, 376
XceI RCATGY 1 cut(s) 583
XspI CTAG 1 cut(s) 257
ZraI GACGTC 1 cut(s) 286
Zsp2I ATGCAT 1 cut(s) 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.