Rroxscaffold_3G00249570

Belongs to the cyclin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0010611
Physical Location & Seq
Reverse (-)
43347910 .. 43350811
2902 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00249570.1

Sequence Viewer

Length: 438 bp
ATGGCGGTTCTGCCCTCGAGTTCGTACAAAGATAAAAAGGGCGTGAGTTATGTGGTCCGTTCGGAAGCCTCGACTAGGGCCGTCACTCGGTCGGTTCGAATCGATACTTTTCATGAAGTGAAGAGCAAACGTGAAAGGAGAGAAGACAAAGCTTTGACAATGCAATTGTTGGCTGTGGCATGTTTGTCCCTTGCAGCCAAATTGGAGGAGATTAATGTCCCAATCTCCCTTGATTTACAGCTTTGTCGGCCCGTTCTTCATGTGAGAAGAAGCCCGAGCTCACCCACTTCGGCATCCACTCTCTCTTACTCCTCCAACGTCGGCGATAGCAACACTACCACGCCGCTTCGGAGGAGACTTCGCTGGTGGGACCCAAACACTACACGGCGGCGTCACACAGCAGCAAGGATGAGTGGGCACTGCTTCGGTCGATTCTAG

Protein Analysis

145

Amino Acids

16.37

Weight (kDa)

10.85

Isoelectric Point (pI)

84.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin_N PF00134 41 - 80 5.9e-06 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 5, 344, 388
AcyI GRCGYC 1 cut(s) 391
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 2 cut(s) 75, 87
AluBI AGCT 3 cut(s) 152, 241, 279
AluI AGCT 3 cut(s) 152, 241, 279
Alw21I GWGCWC 1 cut(s) 281
Alw26I GTCTC 1 cut(s) 349
Ama87I CYCGRG 2 cut(s) 16, 274
AoxI GGCC 2 cut(s) 78, 248
ApeKI GCWGC 2 cut(s) 194, 401
AseI ATTAAT 1 cut(s) 213
AspS9I GGNCC 4 cut(s) 55, 78, 249, 370
AsuHPI GGTGA 1 cut(s) 273
AsuII TTCGAA 1 cut(s) 97
AvaI CYCGRG 2 cut(s) 16, 274
AvaII GGWCC 2 cut(s) 55, 370
BaeGI GKGCMC 1 cut(s) 420
BanII GRGCYC 1 cut(s) 281
BbsI GAAGAC 1 cut(s) 150
Bbv12I GWGCWC 1 cut(s) 281
BbvI GCAGC 2 cut(s) 206, 413
BceAI ACGGC 2 cut(s) 65, 401
BcoDI GTCTC 1 cut(s) 349
BfaI CTAG 2 cut(s) 75, 436
BisI GCNGC 4 cut(s) 195, 344, 389, 402
BlsI GCNGC 4 cut(s) 196, 345, 390, 403
Bme18I GGWCC 2 cut(s) 55, 370
BmeT110I CYCGRG 2 cut(s) 16, 274
BmgT120I GGNCC 4 cut(s) 55, 78, 249, 370
BmiI GGNNCC 2 cut(s) 371, 372
BmsI GCATC 1 cut(s) 302
BpiI GAAGAC 1 cut(s) 150
Bpu14I TTCGAA 1 cut(s) 97
Bsa29I ATCGAT 1 cut(s) 102
BsaHI GRCGYC 1 cut(s) 391
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 87
BseCI ATCGAT 1 cut(s) 102
BseGI GGATG 2 cut(s) 293, 414
BseLI CCNNNNNNNGG 2 cut(s) 75, 87
BseRI GAGGAG 3 cut(s) 221, 301, 367
BseSI GKGCMC 1 cut(s) 420
BseXI GCAGC 2 cut(s) 206, 413
Bsh1285I CGRYCG 2 cut(s) 92, 430
BshFI GGCC 2 cut(s) 80, 250
BshVI ATCGAT 1 cut(s) 102
BsiEI CGRYCG 2 cut(s) 92, 430
BsiHKAI GWGCWC 1 cut(s) 281
BsiHKCI CYCGRG 2 cut(s) 16, 274
BslFI GGGAC 3 cut(s) 172, 203, 383
BslI CCNNNNNNNGG 2 cut(s) 75, 87
BsmAI GTCTC 1 cut(s) 349
BsmFI GGGAC 3 cut(s) 172, 203, 383
BsnI GGCC 2 cut(s) 80, 250
BsoBI CYCGRG 2 cut(s) 16, 274
Bsp119I TTCGAA 1 cut(s) 97
Bsp1286I GDGCHC 2 cut(s) 281, 420
BspACI CCGC 3 cut(s) 5, 344, 388
BspANI GGCC 2 cut(s) 80, 250
BspDI ATCGAT 1 cut(s) 102
BspHI TCATGA 1 cut(s) 112
BspLI GGNNCC 2 cut(s) 371, 372
BspQI GCTCTTC 1 cut(s) 116
BspT104I TTCGAA 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 391
Bst6I CTCTTC 1 cut(s) 116
BstACI GRCGYC 1 cut(s) 391
BstBI TTCGAA 1 cut(s) 97
BstENI CCTNNNNNAGG 1 cut(s) 73
BstF5I GGATG 2 cut(s) 293, 414
BstMAI GTCTC 1 cut(s) 349
BstMCI CGRYCG 2 cut(s) 92, 430
BstMWI GCNNNNNNNGC 1 cut(s) 247
BstNSI RCATGY 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 420
BstV1I GCAGC 2 cut(s) 206, 413
BstV2I GAAGAC 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 102
BsuRI GGCC 2 cut(s) 80, 250
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 2 cut(s) 293, 414
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 1 cut(s) 418
CciI TCATGA 1 cut(s) 112
Cfr13I GGNCC 4 cut(s) 55, 78, 249, 370
ClaI ATCGAT 1 cut(s) 102
CseI GACGC 1 cut(s) 380
Csp6I GTAC 1 cut(s) 25
CviAII CATG 3 cut(s) 113, 180, 260
CviJI RGCY 9 cut(s) 68, 80, 152, 173, 197, 241, 250, 273, 279
CviKI_1 RGCY 9 cut(s) 68, 80, 152, 173, 197, 241, 250, 273, 279
CviQI GTAC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
Ecl136II GAGCTC 1 cut(s) 279
Eco24I GRGCYC 1 cut(s) 281
Eco47I GGWCC 2 cut(s) 55, 370
Eco53kI GAGCTC 1 cut(s) 279
Eco88I CYCGRG 2 cut(s) 16, 274
EcoICRI GAGCTC 1 cut(s) 279
EcoNI CCTNNNNNAGG 1 cut(s) 73
EcoO109I RGGNCCY 1 cut(s) 370
EcoT38I GRGCYC 1 cut(s) 281
FaeI CATG 3 cut(s) 116, 183, 263
FaiI YATR 4 cut(s) 51, 114, 181, 261
FaqI GGGAC 3 cut(s) 172, 203, 383
FatI CATG 3 cut(s) 112, 179, 259
Fnu4HI GCNGC 4 cut(s) 195, 344, 389, 402
FokI GGATG 2 cut(s) 280, 421
FriOI GRGCYC 1 cut(s) 281
Fsp4HI GCNGC 4 cut(s) 195, 344, 389, 402
FspBI CTAG 2 cut(s) 75, 436
GluI GCNGC 4 cut(s) 195, 344, 389, 402
HaeIII GGCC 2 cut(s) 80, 250
HgaI GACGC 1 cut(s) 380
Hin1I GRCGYC 1 cut(s) 391
Hin1II CATG 3 cut(s) 116, 183, 263
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 2 cut(s) 99, 432
HphI GGTGA 1 cut(s) 273
Hpy188I TCNGA 2 cut(s) 64, 351
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 1 cut(s) 323
HpyCH4IV ACGT 2 cut(s) 130, 318
HpyCH4V TGCA 2 cut(s) 163, 194
HpyF10VI GCNNNNNNNGC 1 cut(s) 247
HpySE526I ACGT 2 cut(s) 130, 318
Hsp92I GRCGYC 1 cut(s) 391
Hsp92II CATG 3 cut(s) 116, 183, 263
KflI GGGWCCC 1 cut(s) 370
LguI GCTCTTC 1 cut(s) 116
LpnPI CCDG 1 cut(s) 349
Lsp1109I GCAGC 2 cut(s) 206, 413
LweI GCATC 1 cut(s) 302
MaeI CTAG 2 cut(s) 75, 436
MaeII ACGT 2 cut(s) 130, 318
MaeIII GTNAC 2 cut(s) 82, 392
MboII GAAGA 4 cut(s) 133, 155, 248, 279
MfeI CAATTG 1 cut(s) 164
MhlI GDGCHC 2 cut(s) 281, 420
MluCI AATT 2 cut(s) 164, 200
MmeI TCCRAC 1 cut(s) 339
MnlI CCTC 5 cut(s) 25, 79, 199, 322, 345
MseI TTAA 1 cut(s) 213
MunI CAATTG 1 cut(s) 164
MwoI GCNNNNNNNGC 1 cut(s) 247
NlaIII CATG 3 cut(s) 116, 183, 263
NlaIV GGNNCC 2 cut(s) 371, 372
NmuCI GTSAC 2 cut(s) 82, 392
NspI RCATGY 1 cut(s) 183
NspV TTCGAA 1 cut(s) 97
PaeR7I CTCGAG 1 cut(s) 16
PagI TCATGA 1 cut(s) 112
PciSI GCTCTTC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 2 cut(s) 68, 94
PfeI GAWTC 2 cut(s) 99, 432
PkrI GCNGC 4 cut(s) 196, 345, 390, 403
PpuMI RGGWCCY 1 cut(s) 370
PshBI ATTAAT 1 cut(s) 213
Psp124BI GAGCTC 1 cut(s) 281
Psp5II RGGWCCY 1 cut(s) 370
PspN4I GGNNCC 2 cut(s) 371, 372
PspPI GGNCC 4 cut(s) 55, 78, 249, 370
PspPPI RGGWCCY 1 cut(s) 370
PspXI VCTCGAGB 1 cut(s) 16
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SacI GAGCTC 1 cut(s) 281
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 213
SatI GCNGC 4 cut(s) 195, 344, 389, 402
Sau96I GGNCC 4 cut(s) 55, 78, 249, 370
SduI GDGCHC 2 cut(s) 281, 420
SetI ASST 5 cut(s) 133, 154, 243, 281, 321
SfaNI GCATC 1 cut(s) 302
Sfr274I CTCGAG 1 cut(s) 16
SfuI TTCGAA 1 cut(s) 97
SinI GGWCC 2 cut(s) 55, 370
SlaI CTCGAG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 16
SmoI CTYRAG 1 cut(s) 16
Sse9I AATT 2 cut(s) 164, 200
SsiI CCGC 3 cut(s) 5, 344, 388
SspMI CTAG 2 cut(s) 75, 436
SstI GAGCTC 1 cut(s) 281
TaiI ACGT 2 cut(s) 133, 321
TaqI TCGA 5 cut(s) 17, 71, 97, 102, 430
TaqII GACCGA 2 cut(s) 78, 416
TasI AATT 2 cut(s) 164, 200
TauI GCSGC 2 cut(s) 346, 391
TfiI GAWTC 2 cut(s) 99, 432
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 1 cut(s) 425
TseFI GTSAC 2 cut(s) 82, 392
TseI GCWGC 2 cut(s) 194, 401
Tsp45I GTSAC 2 cut(s) 82, 392
TspDTI ATGAA 3 cut(s) 101, 129, 248
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 1 cut(s) 425
VpaK11BI GGWCC 2 cut(s) 55, 370
VspI ATTAAT 1 cut(s) 213
XagI CCTNNNNNAGG 1 cut(s) 73
XceI RCATGY 1 cut(s) 183
XhoI CTCGAG 1 cut(s) 16
XspI CTAG 2 cut(s) 75, 436
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.