RNA polymerase sigma factor
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24120 AT5G24120 AT5G24120 |
| fragaria_vesca | FvH4_7g31060 FvH4_7g31060 |
| malus_domestica | MD07G1285600.v1.1 |
| prunus_persica | Prupe.2G307500_v2.0.a1 Prupe.2G307500_v2.0.a1 |
| pyrus_communis | pycom07g25910 |
| rosa_chinensis | RchiOBHm_Chr1g0380131 |
| rosa_laevigata | RLG00000026328 |
| rosa_multiflora | Rmu_sc0001232.1_g000016 |
| rosa_roxburghii | Rroxscaffold_4G00279650 |
| rosa_rugosa | Rorug01G0417700 Rorug01G0417800 Rorug01G0417900 Rorug01G0418000 Rorug01G0418000 |
| rosa_samantha | Rh1AG443000 Rh1BG397900 Rh1CG411400 Rh1DG428700 |
| rosa_wichuraiana | Rw1G038460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 73 |
| AciI | CCGC | 6 cut(s) | 239, 375, 592, 797, 941, 973 |
| AclI | AACGTT | 1 cut(s) | 507 |
| AcsI | RAATTY | 3 cut(s) | 920, 1240, 1268 |
| AfaI | GTAC | 1 cut(s) | 1403 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1041 |
| AflII | CTTAAG | 1 cut(s) | 1508 |
| AgeI | ACCGGT | 1 cut(s) | 1225 |
| Alw21I | GWGCWC | 1 cut(s) | 1359 |
| Alw26I | GTCTC | 1 cut(s) | 1168 |
| Ama87I | CYCGRG | 1 cut(s) | 44 |
| AoxI | GGCC | 2 cut(s) | 1494, 1518 |
| ApeKI | GCWGC | 6 cut(s) | 29, 299, 302, 559, 833, 1217 |
| ApoI | RAATTY | 3 cut(s) | 920, 1240, 1268 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 997, 1029 |
| AsiGI | ACCGGT | 1 cut(s) | 1225 |
| AspA2I | CCTAGG | 1 cut(s) | 758 |
| AspS9I | GGNCC | 1 cut(s) | 914 |
| AsuC2I | CCSGG | 1 cut(s) | 778 |
| AsuHPI | GGTGA | 2 cut(s) | 434, 812 |
| AvaI | CYCGRG | 1 cut(s) | 44 |
| AvaII | GGWCC | 1 cut(s) | 914 |
| AvrII | CCTAGG | 1 cut(s) | 758 |
| BauI | CACGAG | 2 cut(s) | 150, 1068 |
| BbsI | GAAGAC | 2 cut(s) | 69, 1150 |
| Bbv12I | GWGCWC | 1 cut(s) | 1359 |
| BbvI | GCAGC | 6 cut(s) | 16, 286, 289, 571, 820, 1204 |
| BccI | CCATC | 6 cut(s) | 100, 365, 1043, 1132, 1289, 1406 |
| BclI | TGATCA | 1 cut(s) | 138 |
| BcnI | CCSGG | 1 cut(s) | 778 |
| BcoDI | GTCTC | 1 cut(s) | 1168 |
| BfaI | CTAG | 3 cut(s) | 759, 1433, 1464 |
| BfrI | CTTAAG | 1 cut(s) | 1508 |
| BglII | AGATCT | 1 cut(s) | 35 |
| BisI | GCNGC | 7 cut(s) | 30, 300, 303, 376, 560, 834, 1218 |
| BlnI | CCTAGG | 1 cut(s) | 758 |
| BlsI | GCNGC | 7 cut(s) | 31, 301, 304, 377, 561, 835, 1219 |
| Bme1390I | CCNGG | 1 cut(s) | 778 |
| Bme18I | GGWCC | 1 cut(s) | 914 |
| BmeT110I | CYCGRG | 1 cut(s) | 44 |
| BmgT120I | GGNCC | 1 cut(s) | 914 |
| BmiI | GGNNCC | 1 cut(s) | 264 |
| BmrFI | CCNGG | 1 cut(s) | 778 |
| BmsI | GCATC | 2 cut(s) | 684, 1522 |
| BoxI | GACNNNNGTC | 1 cut(s) | 933 |
| BpiI | GAAGAC | 2 cut(s) | 69, 1150 |
| BpuEI | CTTGAG | 2 cut(s) | 1163, 1245 |
| BpuMI | CCSGG | 1 cut(s) | 778 |
| BsaJI | CCNNGG | 3 cut(s) | 246, 758, 777 |
| BsaWI | WCCGGW | 1 cut(s) | 1225 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1041 |
| Bse118I | RCCGGY | 1 cut(s) | 1225 |
| Bse1I | ACTGG | 2 cut(s) | 521, 635 |
| BseDI | CCNNGG | 3 cut(s) | 246, 758, 777 |
| BseGI | GGATG | 2 cut(s) | 92, 364 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1041 |
| BseMII | CTCAG | 3 cut(s) | 1113, 1182, 1348 |
| BseNI | ACTGG | 2 cut(s) | 521, 635 |
| BseRI | GAGGAG | 5 cut(s) | 138, 223, 415, 440, 584 |
| BseXI | GCAGC | 6 cut(s) | 16, 286, 289, 571, 820, 1204 |
| BshFI | GGCC | 2 cut(s) | 1496, 1520 |
| BshTI | ACCGGT | 1 cut(s) | 1225 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1359 |
| BsiHKCI | CYCGRG | 1 cut(s) | 44 |
| BsiSI | CCGG | 3 cut(s) | 777, 865, 1226 |
| BslFI | GGGAC | 2 cut(s) | 608, 1058 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1041 |
| BsmAI | GTCTC | 1 cut(s) | 1168 |
| BsmFI | GGGAC | 2 cut(s) | 608, 1058 |
| BsnI | GGCC | 2 cut(s) | 1496, 1520 |
| BsoBI | CYCGRG | 1 cut(s) | 44 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1359 |
| Bsp143I | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| BspACI | CCGC | 6 cut(s) | 239, 375, 592, 797, 941, 973 |
| BspANI | GGCC | 2 cut(s) | 1496, 1520 |
| BspCNI | CTCAG | 3 cut(s) | 1114, 1183, 1347 |
| BspHI | TCATGA | 1 cut(s) | 898 |
| BspLI | GGNNCC | 1 cut(s) | 264 |
| BspQI | GCTCTTC | 2 cut(s) | 717, 1335 |
| BspTI | CTTAAG | 1 cut(s) | 1508 |
| BsrFI | RCCGGY | 1 cut(s) | 1225 |
| BsrI | ACTGG | 2 cut(s) | 521, 635 |
| BssAI | RCCGGY | 1 cut(s) | 1225 |
| BssECI | CCNNGG | 3 cut(s) | 246, 758, 777 |
| BssMI | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| BssSI | CACGAG | 2 cut(s) | 150, 1068 |
| BssT1I | CCWWGG | 2 cut(s) | 246, 758 |
| Bst2BI | CACGAG | 2 cut(s) | 150, 1068 |
| Bst4CI | ACNGT | 3 cut(s) | 1044, 1202, 1406 |
| Bst6I | CTCTTC | 6 cut(s) | 188, 494, 561, 717, 745, 1335 |
| BstAFI | CTTAAG | 1 cut(s) | 1508 |
| BstC8I | GCNNGC | 2 cut(s) | 1326, 1341 |
| BstDEI | CTNAG | 4 cut(s) | 329, 1122, 1191, 1334 |
| BstF5I | GGATG | 2 cut(s) | 92, 364 |
| BstKTI | GATC | 5 cut(s) | 38, 61, 141, 579, 786 |
| BstMAI | GTCTC | 1 cut(s) | 1168 |
| BstMBI | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 110, 773 |
| BstNSI | RCATGY | 2 cut(s) | 677, 1034 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 933 |
| BstSCI | CCNGG | 1 cut(s) | 776 |
| BstV1I | GCAGC | 6 cut(s) | 16, 286, 289, 571, 820, 1204 |
| BstV2I | GAAGAC | 2 cut(s) | 69, 1150 |
| BstX2I | RGATCY | 1 cut(s) | 35 |
| BstYI | RGATCY | 1 cut(s) | 35 |
| BsuRI | GGCC | 2 cut(s) | 1496, 1520 |
| BtsCI | GGATG | 2 cut(s) | 92, 364 |
| Cac8I | GCNNGC | 2 cut(s) | 1326, 1341 |
| CciI | TCATGA | 1 cut(s) | 898 |
| Cfr10I | RCCGGY | 1 cut(s) | 1225 |
| Cfr13I | GGNCC | 1 cut(s) | 914 |
| Csp6I | GTAC | 1 cut(s) | 1402 |
| CspAI | ACCGGT | 1 cut(s) | 1225 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 30, 65 |
| CviAII | CATG | 4 cut(s) | 674, 899, 1031, 1484 |
| CviQI | GTAC | 1 cut(s) | 1402 |
| DdeI | CTNAG | 4 cut(s) | 329, 1122, 1191, 1334 |
| DpnI | GATC | 5 cut(s) | 37, 60, 140, 578, 785 |
| DpnII | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| DraI | TTTAAA | 1 cut(s) | 109 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 73 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 73 |
| Eam1104I | CTCTTC | 6 cut(s) | 188, 494, 561, 717, 745, 1335 |
| EarI | CTCTTC | 6 cut(s) | 188, 494, 561, 717, 745, 1335 |
| Eco130I | CCWWGG | 2 cut(s) | 246, 758 |
| Eco147I | AGGCCT | 1 cut(s) | 1496 |
| Eco47I | GGWCC | 1 cut(s) | 914 |
| Eco88I | CYCGRG | 1 cut(s) | 44 |
| EcoRI | GAATTC | 1 cut(s) | 1268 |
| EcoT14I | CCWWGG | 2 cut(s) | 246, 758 |
| ErhI | CCWWGG | 2 cut(s) | 246, 758 |
| FaeI | CATG | 4 cut(s) | 677, 902, 1034, 1487 |
| FaqI | GGGAC | 2 cut(s) | 608, 1058 |
| FatI | CATG | 4 cut(s) | 673, 898, 1030, 1483 |
| FauI | CCCGC | 3 cut(s) | 585, 790, 934 |
| FbaI | TGATCA | 1 cut(s) | 138 |
| Fnu4HI | GCNGC | 7 cut(s) | 30, 300, 303, 376, 560, 834, 1218 |
| FokI | GGATG | 2 cut(s) | 79, 371 |
| Fsp4HI | GCNGC | 7 cut(s) | 30, 300, 303, 376, 560, 834, 1218 |
| FspBI | CTAG | 3 cut(s) | 759, 1433, 1464 |
| GluI | GCNGC | 7 cut(s) | 30, 300, 303, 376, 560, 834, 1218 |
| HaeIII | GGCC | 2 cut(s) | 1496, 1520 |
| HapII | CCGG | 3 cut(s) | 777, 865, 1226 |
| Hin1II | CATG | 4 cut(s) | 677, 902, 1034, 1487 |
| HindIII | AAGCTT | 2 cut(s) | 326, 1505 |
| HinfI | GANTC | 9 cut(s) | 119, 166, 475, 1088, 1176, 1281, 1361, 1381, 1429 |
| HpaII | CCGG | 3 cut(s) | 777, 865, 1226 |
| HphI | GGTGA | 2 cut(s) | 434, 812 |
| Hpy166II | GTNNAC | 1 cut(s) | 906 |
| Hpy8I | GTNNAC | 1 cut(s) | 906 |
| Hpy99I | CGWCG | 1 cut(s) | 1352 |
| HpyAV | CCTTC | 4 cut(s) | 276, 454, 700, 1544 |
| HpyCH4III | ACNGT | 3 cut(s) | 1044, 1202, 1406 |
| HpyCH4IV | ACGT | 2 cut(s) | 469, 507 |
| HpyCH4V | TGCA | 7 cut(s) | 32, 305, 338, 697, 736, 836, 1220 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 110, 773 |
| HpyF3I | CTNAG | 4 cut(s) | 329, 1122, 1191, 1334 |
| HpySE526I | ACGT | 2 cut(s) | 469, 507 |
| Hsp92II | CATG | 4 cut(s) | 677, 902, 1034, 1487 |
| Ksp22I | TGATCA | 1 cut(s) | 138 |
| Kzo9I | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| LguI | GCTCTTC | 2 cut(s) | 717, 1335 |
| LmnI | GCTCC | 2 cut(s) | 268, 1304 |
| Lsp1109I | GCAGC | 6 cut(s) | 16, 286, 289, 571, 820, 1204 |
| LweI | GCATC | 2 cut(s) | 684, 1522 |
| MaeI | CTAG | 3 cut(s) | 759, 1433, 1464 |
| MaeII | ACGT | 2 cut(s) | 469, 507 |
| MaeIII | GTNAC | 4 cut(s) | 202, 547, 1233, 1255 |
| MalI | GATC | 5 cut(s) | 37, 60, 140, 578, 785 |
| MboI | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| MfeI | CAATTG | 1 cut(s) | 966 |
| MflI | RGATCY | 1 cut(s) | 35 |
| MhlI | GDGCHC | 1 cut(s) | 1359 |
| MluCI | AATT | 6 cut(s) | 127, 256, 920, 966, 1240, 1268 |
| MlyI | GAGTC | 4 cut(s) | 484, 1170, 1390, 1423 |
| MmeI | TCCRAC | 2 cut(s) | 1175, 1282 |
| MseI | TTAA | 4 cut(s) | 84, 108, 852, 1509 |
| MspA1I | CMGCKG | 1 cut(s) | 29 |
| MspCI | CTTAAG | 1 cut(s) | 1508 |
| MspI | CCGG | 3 cut(s) | 777, 865, 1226 |
| MspR9I | CCNGG | 1 cut(s) | 778 |
| MunI | CAATTG | 1 cut(s) | 966 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 110, 773 |
| NciI | CCSGG | 1 cut(s) | 778 |
| NdeII | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| NlaIII | CATG | 4 cut(s) | 677, 902, 1034, 1487 |
| NlaIV | GGNNCC | 1 cut(s) | 264 |
| NmuCI | GTSAC | 1 cut(s) | 1233 |
| NspI | RCATGY | 2 cut(s) | 677, 1034 |
| PagI | TCATGA | 1 cut(s) | 898 |
| PceI | AGGCCT | 1 cut(s) | 1496 |
| PciSI | GCTCTTC | 2 cut(s) | 717, 1335 |
| PcsI | WCGNNNNNNNCGW | 3 cut(s) | 266, 1347, 1356 |
| PfeI | GAWTC | 5 cut(s) | 119, 166, 1088, 1281, 1361 |
| PinAI | ACCGGT | 1 cut(s) | 1225 |
| PkrI | GCNGC | 7 cut(s) | 31, 301, 304, 377, 561, 835, 1219 |
| PleI | GAGTC | 4 cut(s) | 483, 1170, 1389, 1423 |
| PpsI | GAGTC | 4 cut(s) | 483, 1170, 1389, 1423 |
| PshAI | GACNNNNGTC | 1 cut(s) | 933 |
| Psp1406I | AACGTT | 1 cut(s) | 507 |
| PspN4I | GGNNCC | 1 cut(s) | 264 |
| PspPI | GGNCC | 1 cut(s) | 914 |
| PsuI | RGATCY | 1 cut(s) | 35 |
| PvuII | CAGCTG | 1 cut(s) | 29 |
| RsaI | GTAC | 1 cut(s) | 1403 |
| RsaNI | GTAC | 1 cut(s) | 1402 |
| SapI | GCTCTTC | 2 cut(s) | 717, 1335 |
| SaqAI | TTAA | 4 cut(s) | 84, 108, 852, 1509 |
| SatI | GCNGC | 7 cut(s) | 30, 300, 303, 376, 560, 834, 1218 |
| Sau3AI | GATC | 5 cut(s) | 35, 58, 138, 576, 783 |
| Sau96I | GGNCC | 1 cut(s) | 914 |
| SchI | GAGTC | 4 cut(s) | 484, 1170, 1390, 1423 |
| ScrFI | CCNGG | 1 cut(s) | 778 |
| SduI | GDGCHC | 1 cut(s) | 1359 |
| SfaNI | GCATC | 2 cut(s) | 684, 1522 |
| SinI | GGWCC | 1 cut(s) | 914 |
| SmlI | CTYRAG | 3 cut(s) | 1178, 1260, 1508 |
| SmoI | CTYRAG | 3 cut(s) | 1178, 1260, 1508 |
| Sse9I | AATT | 6 cut(s) | 127, 256, 920, 966, 1240, 1268 |
| SseBI | AGGCCT | 1 cut(s) | 1496 |
| SsiI | CCGC | 6 cut(s) | 239, 375, 592, 797, 941, 973 |
| SspMI | CTAG | 3 cut(s) | 759, 1433, 1464 |
| StuI | AGGCCT | 1 cut(s) | 1496 |
| StyD4I | CCNGG | 1 cut(s) | 776 |
| StyI | CCWWGG | 2 cut(s) | 246, 758 |
| TaaI | ACNGT | 3 cut(s) | 1044, 1202, 1406 |
| TaiI | ACGT | 2 cut(s) | 472, 510 |
| TaqI | TCGA | 7 cut(s) | 354, 579, 819, 1004, 1347, 1359, 1393 |
| TaqII | GACCGA | 1 cut(s) | 63 |
| TasI | AATT | 6 cut(s) | 127, 256, 920, 966, 1240, 1268 |
| TauI | GCSGC | 1 cut(s) | 378 |
| TfiI | GAWTC | 5 cut(s) | 119, 166, 1088, 1281, 1361 |
| Tru1I | TTAA | 4 cut(s) | 84, 108, 852, 1509 |
| Tru9I | TTAA | 4 cut(s) | 84, 108, 852, 1509 |
| TseFI | GTSAC | 1 cut(s) | 1233 |
| TseI | GCWGC | 6 cut(s) | 29, 299, 302, 559, 833, 1217 |
| Tsp45I | GTSAC | 1 cut(s) | 1233 |
| TspDTI | ATGAA | 9 cut(s) | 309, 656, 719, 887, 899, 1261, 1353, 1500, 1517 |
| TspGWI | ACGGA | 5 cut(s) | 412, 502, 927, 1169, 1293 |
| Vha464I | CTTAAG | 1 cut(s) | 1508 |
| VpaK11BI | GGWCC | 1 cut(s) | 914 |
| XapI | RAATTY | 3 cut(s) | 920, 1240, 1268 |
| XbaI | TCTAGA | 1 cut(s) | 1463 |
| XceI | RCATGY | 2 cut(s) | 677, 1034 |
| XmaJI | CCTAGG | 1 cut(s) | 758 |
| XspI | CTAG | 3 cut(s) | 759, 1433, 1464 |