RNA polymerase sigma factor sigE, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24120 AT5G24120 AT5G24120 |
| fragaria_vesca | FvH4_7g31060 FvH4_7g31060 |
| malus_domestica | MD07G1285600.v1.1 |
| prunus_persica | Prupe.2G307500_v2.0.a1 Prupe.2G307500_v2.0.a1 |
| pyrus_communis | pycom07g25910 |
| rosa_chinensis | RchiOBHm_Chr1g0380131 |
| rosa_laevigata | RLG00000026328 |
| rosa_multiflora | Rmu_sc0001232.1_g000016 |
| rosa_roxburghii | Rroxscaffold_4G00279650 |
| rosa_rugosa | Rorug01G0417700 Rorug01G0417800 Rorug01G0417900 Rorug01G0418000 Rorug01G0418000 |
| rosa_samantha | Rh1AG443000 Rh1BG397900 Rh1CG411400 Rh1DG428700 |
| rosa_wichuraiana | Rw1G038460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 1299 |
| Acc36I | ACCTGC | 1 cut(s) | 1339 |
| Acc65I | GGTACC | 1 cut(s) | 1203 |
| AccB1I | GGYRCC | 1 cut(s) | 1203 |
| AccII | CGCG | 1 cut(s) | 221 |
| AciI | CCGC | 4 cut(s) | 29, 294, 1106, 1324 |
| AclWI | GGATC | 1 cut(s) | 1037 |
| AcsI | RAATTY | 3 cut(s) | 926, 1110, 1188 |
| AcuI | CTGAAG | 2 cut(s) | 657, 1394 |
| AcyI | GRCGYC | 1 cut(s) | 1296 |
| AfaI | GTAC | 3 cut(s) | 265, 1025, 1205 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1096 |
| AjnI | CCWGG | 2 cut(s) | 147, 942 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1373, 1405 |
| Alw21I | GWGCWC | 1 cut(s) | 56 |
| Alw26I | GTCTC | 2 cut(s) | 722, 1066 |
| AlwI | GGATC | 1 cut(s) | 1037 |
| Ama87I | CYCGRG | 1 cut(s) | 1527 |
| AoxI | GGCC | 4 cut(s) | 1087, 1119, 1221, 1500 |
| ApeKI | GCWGC | 3 cut(s) | 254, 296, 839 |
| ApoI | RAATTY | 3 cut(s) | 926, 1110, 1188 |
| AseI | ATTAAT | 1 cut(s) | 891 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1479 |
| Asp718I | GGTACC | 1 cut(s) | 1203 |
| AspS9I | GGNCC | 3 cut(s) | 920, 1221, 1501 |
| AsuHPI | GGTGA | 2 cut(s) | 1325, 1405 |
| AsuII | TTCGAA | 2 cut(s) | 825, 1483 |
| AvaI | CYCGRG | 1 cut(s) | 1527 |
| AvaII | GGWCC | 1 cut(s) | 920 |
| BanI | GGYRCC | 1 cut(s) | 1203 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1524, 1556 |
| BauI | CACGAG | 2 cut(s) | 1074, 1470 |
| BbsI | GAAGAC | 1 cut(s) | 407 |
| Bbv12I | GWGCWC | 1 cut(s) | 56 |
| BbvCI | CCTCAGC | 2 cut(s) | 25, 783 |
| BbvI | GCAGC | 3 cut(s) | 241, 283, 826 |
| BccI | CCATC | 4 cut(s) | 359, 1049, 1295, 1412 |
| BceAI | ACGGC | 4 cut(s) | 76, 147, 787, 984 |
| BciT130I | CCWGG | 2 cut(s) | 149, 944 |
| BclI | TGATCA | 1 cut(s) | 1395 |
| BcoDI | GTCTC | 2 cut(s) | 722, 1066 |
| BfaI | CTAG | 1 cut(s) | 405 |
| BfmI | CTRYAG | 1 cut(s) | 168 |
| BfuAI | ACCTGC | 1 cut(s) | 1339 |
| BglII | AGATCT | 2 cut(s) | 74, 748 |
| BisI | GCNGC | 5 cut(s) | 30, 255, 294, 297, 840 |
| BlsI | GCNGC | 5 cut(s) | 31, 256, 295, 298, 841 |
| Bme1390I | CCNGG | 2 cut(s) | 149, 944 |
| Bme18I | GGWCC | 1 cut(s) | 920 |
| BmeT110I | CYCGRG | 1 cut(s) | 1527 |
| BmgT120I | GGNCC | 3 cut(s) | 920, 1221, 1501 |
| BmiI | GGNNCC | 1 cut(s) | 1205 |
| BmrFI | CCNGG | 2 cut(s) | 149, 944 |
| BmsI | GCATC | 2 cut(s) | 349, 1143 |
| BpiI | GAAGAC | 1 cut(s) | 407 |
| Bpu10I | CCTNAGC | 2 cut(s) | 25, 783 |
| Bpu14I | TTCGAA | 2 cut(s) | 825, 1483 |
| BpuEI | CTTGAG | 3 cut(s) | 1048, 1112, 1148 |
| BsaHI | GRCGYC | 1 cut(s) | 1296 |
| BsaI | GGTCTC | 1 cut(s) | 722 |
| BsaJI | CCNNGG | 3 cut(s) | 92, 147, 148 |
| BsaWI | WCCGGW | 1 cut(s) | 658 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1096 |
| Bse118I | RCCGGY | 1 cut(s) | 1320 |
| Bse1I | ACTGG | 2 cut(s) | 641, 1031 |
| BseBI | CCWGG | 2 cut(s) | 149, 944 |
| BseDI | CCNNGG | 3 cut(s) | 92, 147, 148 |
| BseGI | GGATG | 2 cut(s) | 1158, 1519 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1096 |
| BseMII | CTCAG | 4 cut(s) | 39, 321, 774, 1354 |
| BseNI | ACTGG | 2 cut(s) | 641, 1031 |
| BseRI | GAGGAG | 3 cut(s) | 391, 602, 1286 |
| BseXI | GCAGC | 3 cut(s) | 241, 283, 826 |
| BsgI | GTGCAG | 1 cut(s) | 825 |
| Bsh1236I | CGCG | 1 cut(s) | 221 |
| BshFI | GGCC | 4 cut(s) | 1089, 1121, 1223, 1502 |
| BshNI | GGYRCC | 1 cut(s) | 1203 |
| BsiHKAI | GWGCWC | 1 cut(s) | 56 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1527 |
| BsiSI | CCGG | 2 cut(s) | 659, 1321 |
| BslFI | GGGAC | 1 cut(s) | 769 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1096 |
| BsmAI | GTCTC | 2 cut(s) | 722, 1066 |
| BsmFI | GGGAC | 1 cut(s) | 769 |
| BsnI | GGCC | 4 cut(s) | 1089, 1121, 1223, 1502 |
| Bso31I | GGTCTC | 1 cut(s) | 722 |
| BsoBI | CYCGRG | 1 cut(s) | 1527 |
| Bsp119I | TTCGAA | 2 cut(s) | 825, 1483 |
| Bsp1286I | GDGCHC | 1 cut(s) | 56 |
| Bsp143I | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| Bsp68I | TCGCGA | 1 cut(s) | 221 |
| BspACI | CCGC | 4 cut(s) | 29, 294, 1106, 1324 |
| BspANI | GGCC | 4 cut(s) | 1089, 1121, 1223, 1502 |
| BspCNI | CTCAG | 4 cut(s) | 38, 322, 775, 1353 |
| BspFNI | CGCG | 1 cut(s) | 221 |
| BspHI | TCATGA | 2 cut(s) | 418, 1506 |
| BspLI | GGNNCC | 1 cut(s) | 1205 |
| BspMI | ACCTGC | 1 cut(s) | 1339 |
| BspPI | GGATC | 1 cut(s) | 1037 |
| BspQI | GCTCTTC | 1 cut(s) | 1341 |
| BspT104I | TTCGAA | 2 cut(s) | 825, 1483 |
| BspT107I | GGYRCC | 1 cut(s) | 1203 |
| BspTNI | GGTCTC | 1 cut(s) | 722 |
| BsrFI | RCCGGY | 1 cut(s) | 1320 |
| BsrI | ACTGG | 2 cut(s) | 641, 1031 |
| BssAI | RCCGGY | 1 cut(s) | 1320 |
| BssECI | CCNNGG | 3 cut(s) | 92, 147, 148 |
| BssMI | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| BssNI | GRCGYC | 1 cut(s) | 1296 |
| BssSI | CACGAG | 2 cut(s) | 1074, 1470 |
| Bst2BI | CACGAG | 2 cut(s) | 1074, 1470 |
| Bst2UI | CCWGG | 2 cut(s) | 149, 944 |
| Bst4CI | ACNGT | 3 cut(s) | 16, 1060, 1286 |
| Bst6I | CTCTTC | 5 cut(s) | 423, 428, 1161, 1248, 1341 |
| BstACI | GRCGYC | 1 cut(s) | 1296 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 140 |
| BstBI | TTCGAA | 2 cut(s) | 825, 1483 |
| BstC8I | GCNNGC | 4 cut(s) | 681, 1038, 1257, 1347 |
| BstDEI | CTNAG | 4 cut(s) | 25, 330, 783, 1340 |
| BstDSI | CCRYGG | 1 cut(s) | 92 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 941 |
| BstF5I | GGATG | 2 cut(s) | 1158, 1519 |
| BstFNI | CGCG | 1 cut(s) | 221 |
| BstKTI | GATC | 8 cut(s) | 77, 418, 562, 622, 751, 979, 1032, 1398 |
| BstMAI | GTCTC | 2 cut(s) | 722, 1066 |
| BstMBI | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 140, 859 |
| BstNI | CCWGG | 2 cut(s) | 149, 944 |
| BstNSI | RCATGY | 3 cut(s) | 683, 1040, 1259 |
| BstSCI | CCNGG | 2 cut(s) | 147, 942 |
| BstSFI | CTRYAG | 1 cut(s) | 168 |
| BstUI | CGCG | 1 cut(s) | 221 |
| BstV1I | GCAGC | 3 cut(s) | 241, 283, 826 |
| BstV2I | GAAGAC | 1 cut(s) | 407 |
| BstX2I | RGATCY | 2 cut(s) | 74, 748 |
| BstYI | RGATCY | 2 cut(s) | 74, 748 |
| BsuRI | GGCC | 4 cut(s) | 1089, 1121, 1223, 1502 |
| BtgI | CCRYGG | 1 cut(s) | 92 |
| BtsCI | GGATG | 2 cut(s) | 1158, 1519 |
| BtuMI | TCGCGA | 1 cut(s) | 221 |
| BveI | ACCTGC | 1 cut(s) | 1339 |
| Cac8I | GCNNGC | 4 cut(s) | 681, 1038, 1257, 1347 |
| CciI | TCATGA | 2 cut(s) | 418, 1506 |
| Cfr10I | RCCGGY | 1 cut(s) | 1320 |
| Cfr13I | GGNCC | 3 cut(s) | 920, 1221, 1501 |
| Csp6I | GTAC | 3 cut(s) | 264, 1024, 1204 |
| CviQI | GTAC | 3 cut(s) | 264, 1024, 1204 |
| DdeI | CTNAG | 4 cut(s) | 25, 330, 783, 1340 |
| DpnI | GATC | 8 cut(s) | 76, 417, 561, 621, 750, 978, 1031, 1397 |
| DpnII | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| DraI | TTTAAA | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 5 cut(s) | 423, 428, 1161, 1248, 1341 |
| EarI | CTCTTC | 5 cut(s) | 423, 428, 1161, 1248, 1341 |
| EciI | GGCGGA | 2 cut(s) | 1121, 1339 |
| Eco31I | GGTCTC | 1 cut(s) | 722 |
| Eco47I | GGWCC | 1 cut(s) | 920 |
| Eco57I | CTGAAG | 2 cut(s) | 657, 1394 |
| Eco88I | CYCGRG | 1 cut(s) | 1527 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 941 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1221, 1501 |
| EcoRII | CCWGG | 2 cut(s) | 147, 942 |
| FaqI | GGGAC | 1 cut(s) | 769 |
| FauNDI | CATATG | 1 cut(s) | 1015 |
| FbaI | TGATCA | 1 cut(s) | 1395 |
| Fnu4HI | GCNGC | 5 cut(s) | 30, 255, 294, 297, 840 |
| FokI | GGATG | 2 cut(s) | 1165, 1506 |
| Fsp4HI | GCNGC | 5 cut(s) | 30, 255, 294, 297, 840 |
| FspBI | CTAG | 1 cut(s) | 405 |
| GluI | GCNGC | 5 cut(s) | 30, 255, 294, 297, 840 |
| HaeIII | GGCC | 4 cut(s) | 1089, 1121, 1223, 1502 |
| HapII | CCGG | 2 cut(s) | 659, 1321 |
| Hin1I | GRCGYC | 1 cut(s) | 1296 |
| HindIII | AAGCTT | 3 cut(s) | 1066, 1124, 1387 |
| HinfI | GANTC | 6 cut(s) | 37, 119, 487, 652, 1094, 1367 |
| HpaII | CCGG | 2 cut(s) | 659, 1321 |
| HphI | GGTGA | 2 cut(s) | 1325, 1405 |
| Hpy166II | GTNNAC | 1 cut(s) | 264 |
| Hpy188I | TCNGA | 5 cut(s) | 72, 86, 676, 872, 1400 |
| Hpy188III | TCNNGA | 7 cut(s) | 220, 419, 491, 905, 932, 1470, 1507 |
| Hpy8I | GTNNAC | 1 cut(s) | 264 |
| Hpy99I | CGWCG | 1 cut(s) | 1301 |
| HpyAV | CCTTC | 3 cut(s) | 466, 706, 1304 |
| HpyCH4III | ACNGT | 3 cut(s) | 16, 1060, 1286 |
| HpyCH4IV | ACGT | 2 cut(s) | 1048, 1296 |
| HpyCH4V | TGCA | 7 cut(s) | 143, 362, 506, 703, 842, 914, 1259 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 140, 859 |
| HpyF3I | CTNAG | 4 cut(s) | 25, 330, 783, 1340 |
| HpySE526I | ACGT | 2 cut(s) | 1048, 1296 |
| Hsp92I | GRCGYC | 1 cut(s) | 1296 |
| KpnI | GGTACC | 1 cut(s) | 1207 |
| Ksp22I | TGATCA | 1 cut(s) | 1395 |
| Kzo9I | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| LguI | GCTCTTC | 1 cut(s) | 1341 |
| LmnI | GCTCC | 3 cut(s) | 192, 262, 589 |
| Lsp1109I | GCAGC | 3 cut(s) | 241, 283, 826 |
| LweI | GCATC | 2 cut(s) | 349, 1143 |
| MaeI | CTAG | 1 cut(s) | 405 |
| MaeII | ACGT | 2 cut(s) | 1048, 1296 |
| MaeIII | GTNAC | 1 cut(s) | 10 |
| MalI | GATC | 8 cut(s) | 76, 417, 561, 621, 750, 978, 1031, 1397 |
| MboI | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| MfeI | CAATTG | 1 cut(s) | 972 |
| MflI | RGATCY | 2 cut(s) | 74, 748 |
| MhlI | GDGCHC | 1 cut(s) | 56 |
| MluCI | AATT | 6 cut(s) | 737, 776, 926, 972, 1110, 1188 |
| MlyI | GAGTC | 2 cut(s) | 31, 1103 |
| MmeI | TCCRAC | 2 cut(s) | 895, 1165 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1479 |
| MseI | TTAA | 3 cut(s) | 108, 891, 1460 |
| MslI | CAYNNNNRTG | 2 cut(s) | 511, 800 |
| MspA1I | CMGCKG | 2 cut(s) | 29, 296 |
| MspI | CCGG | 2 cut(s) | 659, 1321 |
| MspR9I | CCNGG | 2 cut(s) | 149, 944 |
| MunI | CAATTG | 1 cut(s) | 972 |
| MvaI | CCWGG | 2 cut(s) | 149, 944 |
| MvnI | CGCG | 1 cut(s) | 221 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 140, 859 |
| NdeI | CATATG | 1 cut(s) | 1015 |
| NdeII | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| NlaIV | GGNNCC | 1 cut(s) | 1205 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| NruI | TCGCGA | 1 cut(s) | 221 |
| NspI | RCATGY | 3 cut(s) | 683, 1040, 1259 |
| NspV | TTCGAA | 2 cut(s) | 825, 1483 |
| PaeI | GCATGC | 3 cut(s) | 683, 1040, 1259 |
| PaeR7I | CTCGAG | 1 cut(s) | 1527 |
| PagI | TCATGA | 2 cut(s) | 418, 1506 |
| PasI | CCCWGGG | 1 cut(s) | 148 |
| PciSI | GCTCTTC | 1 cut(s) | 1341 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 841 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1479 |
| PfeI | GAWTC | 4 cut(s) | 119, 487, 652, 1367 |
| PkrI | GCNGC | 5 cut(s) | 31, 256, 295, 298, 841 |
| PleI | GAGTC | 2 cut(s) | 31, 1102 |
| PpsI | GAGTC | 2 cut(s) | 31, 1102 |
| PshBI | ATTAAT | 1 cut(s) | 891 |
| Psp6I | CCWGG | 2 cut(s) | 147, 942 |
| PspGI | CCWGG | 2 cut(s) | 147, 942 |
| PspN4I | GGNNCC | 1 cut(s) | 1205 |
| PspPI | GGNCC | 3 cut(s) | 920, 1221, 1501 |
| PspXI | VCTCGAGB | 1 cut(s) | 1527 |
| PsuI | RGATCY | 2 cut(s) | 74, 748 |
| RruI | TCGCGA | 1 cut(s) | 221 |
| RsaI | GTAC | 3 cut(s) | 265, 1025, 1205 |
| RsaNI | GTAC | 3 cut(s) | 264, 1024, 1204 |
| RseI | CAYNNNNRTG | 2 cut(s) | 511, 800 |
| SapI | GCTCTTC | 1 cut(s) | 1341 |
| SaqAI | TTAA | 3 cut(s) | 108, 891, 1460 |
| SatI | GCNGC | 5 cut(s) | 30, 255, 294, 297, 840 |
| Sau3AI | GATC | 8 cut(s) | 74, 415, 559, 619, 748, 976, 1029, 1395 |
| Sau96I | GGNCC | 3 cut(s) | 920, 1221, 1501 |
| SchI | GAGTC | 2 cut(s) | 31, 1103 |
| ScrFI | CCNGG | 2 cut(s) | 149, 944 |
| SduI | GDGCHC | 1 cut(s) | 56 |
| SfaNI | GCATC | 2 cut(s) | 349, 1143 |
| SfcI | CTRYAG | 1 cut(s) | 168 |
| Sfr274I | CTCGAG | 1 cut(s) | 1527 |
| SfuI | TTCGAA | 2 cut(s) | 825, 1483 |
| SinI | GGWCC | 1 cut(s) | 920 |
| SlaI | CTCGAG | 1 cut(s) | 1527 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 511, 800 |
| SmlI | CTYRAG | 4 cut(s) | 1063, 1091, 1127, 1527 |
| SmoI | CTYRAG | 4 cut(s) | 1063, 1091, 1127, 1527 |
| SphI | GCATGC | 3 cut(s) | 683, 1040, 1259 |
| Sse9I | AATT | 6 cut(s) | 737, 776, 926, 972, 1110, 1188 |
| SsiI | CCGC | 4 cut(s) | 29, 294, 1106, 1324 |
| SspI | AATATT | 2 cut(s) | 899, 1465 |
| SspMI | CTAG | 1 cut(s) | 405 |
| StyD4I | CCNGG | 2 cut(s) | 147, 942 |
| TaaI | ACNGT | 3 cut(s) | 16, 1060, 1286 |
| TaiI | ACGT | 2 cut(s) | 1051, 1299 |
| TaqI | TCGA | 7 cut(s) | 62, 825, 835, 1176, 1299, 1483, 1528 |
| TasI | AATT | 6 cut(s) | 737, 776, 926, 972, 1110, 1188 |
| TatI | WGTACW | 2 cut(s) | 263, 1023 |
| TauI | GCSGC | 2 cut(s) | 32, 296 |
| TfiI | GAWTC | 4 cut(s) | 119, 487, 652, 1367 |
| Tru1I | TTAA | 3 cut(s) | 108, 891, 1460 |
| Tru9I | TTAA | 3 cut(s) | 108, 891, 1460 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 3 cut(s) | 254, 296, 839 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspGWI | ACGGA | 2 cut(s) | 30, 249 |
| VpaK11BI | GGWCC | 1 cut(s) | 920 |
| VspI | ATTAAT | 1 cut(s) | 891 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 941 |
| XapI | RAATTY | 3 cut(s) | 926, 1110, 1188 |
| XceI | RCATGY | 3 cut(s) | 683, 1040, 1259 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 775 |
| XhoI | CTCGAG | 1 cut(s) | 1527 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1479 |
| XspI | CTAG | 1 cut(s) | 405 |
| ZraI | GACGTC | 1 cut(s) | 1297 |