pycom07g25910

RNA polymerase sigma factor sigE, chloroplastic

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
26076132 .. 26078432
2301 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g25910.3

Sequence Viewer

Length: 1560 bp
ATGGGAGTTGTGACAGTTTCAACCTCAGCGGCAAGGACTCCGTTAGGATTGAGCACAAAATCGACAAGTCAGAGATCTCCATTCAGAAAGCCGTGGATAGTTGCGTTTAAAACAGATGAATCCAATAAGACGGCATTAGTTGCACCCCAGGGAAAAATACCTTTGCCTATAGAAACACGAAAGAAGCTCCAAAAGAGAATAGGGAAAGCCAGAAAACTCGCGAAAAGTGTGAAATCTACTGCTACTGATGTAGCTGCTCCGTGTACTACTTTGGAAGTGGATTACAATGAAGCCGCTGCCAAGCTGGAAAACTTATACAAGCGTAGCCCTGAGATTGAAGCTGATGTTGATGTGGAAGATGCAGATGGCTTGTTGAGGAGGGGTCGCAAAAGGAGGAAGAAGACTAGCGAAAGCGATCATGAGAAAGAAGAGAAGAGAACAAGTGATATTGTGGTTAGAAGCAAGACAAAGAAGGCGAAAAGATTGAATCTTGATAAAAGGGTTGCATTGAAATGGAACAAGGACGAGAAAGTGGTTTCTTCGGTTCAAATGAGGAAAGATCAAAAGAACGAAATGGAGAAGATTGAGGAGCTGGTTAGGGAGTATTCGGCTTCAACTGATCTGGTCAGTTTGGACTGGAAAAAGATGAAGATTCCTCCGGTTCTCACTTCTTCAGAGCATGCTTGGTTGTTCAAGCTAATGCAACCTATGAAGGGTCTCCATGAAGTGAGAGAGCAATTACAAAAAGATCTGGGGACAGAACCAACCAACGGCGAATTGGCTGAGGCGACAAACATGAGTGTGGTTCAAGTGAAAAAACATTTCGAAGTTGGTCGAGCTGCACGAAACAAGCTCATCAAGCACAATCTCCGACTTGTGTTATTCGTCATTAATAAATATTTTCAAGACTTTGCAAATGGTCCAAAATTTCAAGACCTGTGCCAGGCAGGAGTAAGGGGGCTTATTACGGCAATTGATCGCTTTGAACCAAAAAGAAGTTTTCGGCTTTCCACATATGGTCTGTACTGGATCAGGCATGCCATCATACGTTCCATGACAGTCTCAAGCTTTACTCGTGTTTCATTTGGCCTTGAGTCGGTTAGGGCGGAAATTCAAAAGGCCAAGCTTGAGATGATGTTTTCGCTCAAAAGGATGCCAACTGACGAAGAGATAATCGAAAAAGTTGGAATTTCGCCAGAGAGGTACCATGAAGTAATGAGGGCCTCAAAACCCGTTTCCTCTCTTCATTCAAGGCATGCAACCACACAAGAGGAGTATATCAACGGTATTACTGACGTCGATGGTGTTGAAGGTGATAACCGGCGGAAACCTGCTCTTCTCAGGCTTGCTATTGATGATGTGCTTGATTCCCTGAAGCCGAAAGAAAGCTTGGTGATCAGACAGAGATACGGGCTTGATGGTAAGGGGGATAGAACATTAGGAGAGATTGCTGGAAACTTAAATATTTCACGAGAAATGGTTCGAAAGCATGAAGTCAAGGCCCTCATGAAGCTCAAACATCCAGCTCGAGTAGATTATCTTCGCAGATACATAGTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

520

Amino Acids

59.23

Weight (kDa)

9.88

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1299
Acc36I ACCTGC 1 cut(s) 1339
Acc65I GGTACC 1 cut(s) 1203
AccB1I GGYRCC 1 cut(s) 1203
AccII CGCG 1 cut(s) 221
AciI CCGC 4 cut(s) 29, 294, 1106, 1324
AclWI GGATC 1 cut(s) 1037
AcsI RAATTY 3 cut(s) 926, 1110, 1188
AcuI CTGAAG 2 cut(s) 657, 1394
AcyI GRCGYC 1 cut(s) 1296
AfaI GTAC 3 cut(s) 265, 1025, 1205
AfiI CCNNNNNNNGG 4 cut(s) 713, 770, 943, 1096
AjnI CCWGG 2 cut(s) 147, 942
AjuI GAANNNNNNNTTGG 2 cut(s) 1373, 1405
Alw21I GWGCWC 1 cut(s) 56
Alw26I GTCTC 2 cut(s) 722, 1066
AlwI GGATC 1 cut(s) 1037
Ama87I CYCGRG 1 cut(s) 1527
AoxI GGCC 4 cut(s) 1087, 1119, 1221, 1500
ApeKI GCWGC 3 cut(s) 254, 296, 839
ApoI RAATTY 3 cut(s) 926, 1110, 1188
AseI ATTAAT 1 cut(s) 891
Asp700I GAANNNNTTC 1 cut(s) 1479
Asp718I GGTACC 1 cut(s) 1203
AspS9I GGNCC 3 cut(s) 920, 1221, 1501
AsuHPI GGTGA 2 cut(s) 1325, 1405
AsuII TTCGAA 2 cut(s) 825, 1483
AvaI CYCGRG 1 cut(s) 1527
AvaII GGWCC 1 cut(s) 920
BanI GGYRCC 1 cut(s) 1203
BarI GAAGNNNNNNTAC 2 cut(s) 1524, 1556
BauI CACGAG 2 cut(s) 1074, 1470
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 56
BbvCI CCTCAGC 2 cut(s) 25, 783
BbvI GCAGC 3 cut(s) 241, 283, 826
BccI CCATC 4 cut(s) 359, 1049, 1295, 1412
BceAI ACGGC 4 cut(s) 76, 147, 787, 984
BciT130I CCWGG 2 cut(s) 149, 944
BclI TGATCA 1 cut(s) 1395
BcoDI GTCTC 2 cut(s) 722, 1066
BfaI CTAG 1 cut(s) 405
BfmI CTRYAG 1 cut(s) 168
BfuAI ACCTGC 1 cut(s) 1339
BglII AGATCT 2 cut(s) 74, 748
BisI GCNGC 5 cut(s) 30, 255, 294, 297, 840
BlsI GCNGC 5 cut(s) 31, 256, 295, 298, 841
Bme1390I CCNGG 2 cut(s) 149, 944
Bme18I GGWCC 1 cut(s) 920
BmeT110I CYCGRG 1 cut(s) 1527
BmgT120I GGNCC 3 cut(s) 920, 1221, 1501
BmiI GGNNCC 1 cut(s) 1205
BmrFI CCNGG 2 cut(s) 149, 944
BmsI GCATC 2 cut(s) 349, 1143
BpiI GAAGAC 1 cut(s) 407
Bpu10I CCTNAGC 2 cut(s) 25, 783
Bpu14I TTCGAA 2 cut(s) 825, 1483
BpuEI CTTGAG 3 cut(s) 1048, 1112, 1148
BsaHI GRCGYC 1 cut(s) 1296
BsaI GGTCTC 1 cut(s) 722
BsaJI CCNNGG 3 cut(s) 92, 147, 148
BsaWI WCCGGW 1 cut(s) 658
Bsc4I CCNNNNNNNGG 4 cut(s) 713, 770, 943, 1096
Bse118I RCCGGY 1 cut(s) 1320
Bse1I ACTGG 2 cut(s) 641, 1031
BseBI CCWGG 2 cut(s) 149, 944
BseDI CCNNGG 3 cut(s) 92, 147, 148
BseGI GGATG 2 cut(s) 1158, 1519
BseLI CCNNNNNNNGG 4 cut(s) 713, 770, 943, 1096
BseMII CTCAG 4 cut(s) 39, 321, 774, 1354
BseNI ACTGG 2 cut(s) 641, 1031
BseRI GAGGAG 3 cut(s) 391, 602, 1286
BseXI GCAGC 3 cut(s) 241, 283, 826
BsgI GTGCAG 1 cut(s) 825
Bsh1236I CGCG 1 cut(s) 221
BshFI GGCC 4 cut(s) 1089, 1121, 1223, 1502
BshNI GGYRCC 1 cut(s) 1203
BsiHKAI GWGCWC 1 cut(s) 56
BsiHKCI CYCGRG 1 cut(s) 1527
BsiSI CCGG 2 cut(s) 659, 1321
BslFI GGGAC 1 cut(s) 769
BslI CCNNNNNNNGG 4 cut(s) 713, 770, 943, 1096
BsmAI GTCTC 2 cut(s) 722, 1066
BsmFI GGGAC 1 cut(s) 769
BsnI GGCC 4 cut(s) 1089, 1121, 1223, 1502
Bso31I GGTCTC 1 cut(s) 722
BsoBI CYCGRG 1 cut(s) 1527
Bsp119I TTCGAA 2 cut(s) 825, 1483
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
Bsp68I TCGCGA 1 cut(s) 221
BspACI CCGC 4 cut(s) 29, 294, 1106, 1324
BspANI GGCC 4 cut(s) 1089, 1121, 1223, 1502
BspCNI CTCAG 4 cut(s) 38, 322, 775, 1353
BspFNI CGCG 1 cut(s) 221
BspHI TCATGA 2 cut(s) 418, 1506
BspLI GGNNCC 1 cut(s) 1205
BspMI ACCTGC 1 cut(s) 1339
BspPI GGATC 1 cut(s) 1037
BspQI GCTCTTC 1 cut(s) 1341
BspT104I TTCGAA 2 cut(s) 825, 1483
BspT107I GGYRCC 1 cut(s) 1203
BspTNI GGTCTC 1 cut(s) 722
BsrFI RCCGGY 1 cut(s) 1320
BsrI ACTGG 2 cut(s) 641, 1031
BssAI RCCGGY 1 cut(s) 1320
BssECI CCNNGG 3 cut(s) 92, 147, 148
BssMI GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
BssNI GRCGYC 1 cut(s) 1296
BssSI CACGAG 2 cut(s) 1074, 1470
Bst2BI CACGAG 2 cut(s) 1074, 1470
Bst2UI CCWGG 2 cut(s) 149, 944
Bst4CI ACNGT 3 cut(s) 16, 1060, 1286
Bst6I CTCTTC 5 cut(s) 423, 428, 1161, 1248, 1341
BstACI GRCGYC 1 cut(s) 1296
BstAPI GCANNNNNTGC 1 cut(s) 140
BstBI TTCGAA 2 cut(s) 825, 1483
BstC8I GCNNGC 4 cut(s) 681, 1038, 1257, 1347
BstDEI CTNAG 4 cut(s) 25, 330, 783, 1340
BstDSI CCRYGG 1 cut(s) 92
BstENI CCTNNNNNAGG 1 cut(s) 941
BstF5I GGATG 2 cut(s) 1158, 1519
BstFNI CGCG 1 cut(s) 221
BstKTI GATC 8 cut(s) 77, 418, 562, 622, 751, 979, 1032, 1398
BstMAI GTCTC 2 cut(s) 722, 1066
BstMBI GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
BstMWI GCNNNNNNNGC 2 cut(s) 140, 859
BstNI CCWGG 2 cut(s) 149, 944
BstNSI RCATGY 3 cut(s) 683, 1040, 1259
BstSCI CCNGG 2 cut(s) 147, 942
BstSFI CTRYAG 1 cut(s) 168
BstUI CGCG 1 cut(s) 221
BstV1I GCAGC 3 cut(s) 241, 283, 826
BstV2I GAAGAC 1 cut(s) 407
BstX2I RGATCY 2 cut(s) 74, 748
BstYI RGATCY 2 cut(s) 74, 748
BsuRI GGCC 4 cut(s) 1089, 1121, 1223, 1502
BtgI CCRYGG 1 cut(s) 92
BtsCI GGATG 2 cut(s) 1158, 1519
BtuMI TCGCGA 1 cut(s) 221
BveI ACCTGC 1 cut(s) 1339
Cac8I GCNNGC 4 cut(s) 681, 1038, 1257, 1347
CciI TCATGA 2 cut(s) 418, 1506
Cfr10I RCCGGY 1 cut(s) 1320
Cfr13I GGNCC 3 cut(s) 920, 1221, 1501
Csp6I GTAC 3 cut(s) 264, 1024, 1204
CviQI GTAC 3 cut(s) 264, 1024, 1204
DdeI CTNAG 4 cut(s) 25, 330, 783, 1340
DpnI GATC 8 cut(s) 76, 417, 561, 621, 750, 978, 1031, 1397
DpnII GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
DraI TTTAAA 1 cut(s) 109
Eam1104I CTCTTC 5 cut(s) 423, 428, 1161, 1248, 1341
EarI CTCTTC 5 cut(s) 423, 428, 1161, 1248, 1341
EciI GGCGGA 2 cut(s) 1121, 1339
Eco31I GGTCTC 1 cut(s) 722
Eco47I GGWCC 1 cut(s) 920
Eco57I CTGAAG 2 cut(s) 657, 1394
Eco88I CYCGRG 1 cut(s) 1527
EcoNI CCTNNNNNAGG 1 cut(s) 941
EcoO109I RGGNCCY 2 cut(s) 1221, 1501
EcoRII CCWGG 2 cut(s) 147, 942
FaqI GGGAC 1 cut(s) 769
FauNDI CATATG 1 cut(s) 1015
FbaI TGATCA 1 cut(s) 1395
Fnu4HI GCNGC 5 cut(s) 30, 255, 294, 297, 840
FokI GGATG 2 cut(s) 1165, 1506
Fsp4HI GCNGC 5 cut(s) 30, 255, 294, 297, 840
FspBI CTAG 1 cut(s) 405
GluI GCNGC 5 cut(s) 30, 255, 294, 297, 840
HaeIII GGCC 4 cut(s) 1089, 1121, 1223, 1502
HapII CCGG 2 cut(s) 659, 1321
Hin1I GRCGYC 1 cut(s) 1296
HindIII AAGCTT 3 cut(s) 1066, 1124, 1387
HinfI GANTC 6 cut(s) 37, 119, 487, 652, 1094, 1367
HpaII CCGG 2 cut(s) 659, 1321
HphI GGTGA 2 cut(s) 1325, 1405
Hpy166II GTNNAC 1 cut(s) 264
Hpy188I TCNGA 5 cut(s) 72, 86, 676, 872, 1400
Hpy188III TCNNGA 7 cut(s) 220, 419, 491, 905, 932, 1470, 1507
Hpy8I GTNNAC 1 cut(s) 264
Hpy99I CGWCG 1 cut(s) 1301
HpyAV CCTTC 3 cut(s) 466, 706, 1304
HpyCH4III ACNGT 3 cut(s) 16, 1060, 1286
HpyCH4IV ACGT 2 cut(s) 1048, 1296
HpyCH4V TGCA 7 cut(s) 143, 362, 506, 703, 842, 914, 1259
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 859
HpyF3I CTNAG 4 cut(s) 25, 330, 783, 1340
HpySE526I ACGT 2 cut(s) 1048, 1296
Hsp92I GRCGYC 1 cut(s) 1296
KpnI GGTACC 1 cut(s) 1207
Ksp22I TGATCA 1 cut(s) 1395
Kzo9I GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
LguI GCTCTTC 1 cut(s) 1341
LmnI GCTCC 3 cut(s) 192, 262, 589
Lsp1109I GCAGC 3 cut(s) 241, 283, 826
LweI GCATC 2 cut(s) 349, 1143
MaeI CTAG 1 cut(s) 405
MaeII ACGT 2 cut(s) 1048, 1296
MaeIII GTNAC 1 cut(s) 10
MalI GATC 8 cut(s) 76, 417, 561, 621, 750, 978, 1031, 1397
MboI GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
MfeI CAATTG 1 cut(s) 972
MflI RGATCY 2 cut(s) 74, 748
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 6 cut(s) 737, 776, 926, 972, 1110, 1188
MlyI GAGTC 2 cut(s) 31, 1103
MmeI TCCRAC 2 cut(s) 895, 1165
MroXI GAANNNNTTC 1 cut(s) 1479
MseI TTAA 3 cut(s) 108, 891, 1460
MslI CAYNNNNRTG 2 cut(s) 511, 800
MspA1I CMGCKG 2 cut(s) 29, 296
MspI CCGG 2 cut(s) 659, 1321
MspR9I CCNGG 2 cut(s) 149, 944
MunI CAATTG 1 cut(s) 972
MvaI CCWGG 2 cut(s) 149, 944
MvnI CGCG 1 cut(s) 221
MwoI GCNNNNNNNGC 2 cut(s) 140, 859
NdeI CATATG 1 cut(s) 1015
NdeII GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
NlaIV GGNNCC 1 cut(s) 1205
NmuCI GTSAC 1 cut(s) 10
NruI TCGCGA 1 cut(s) 221
NspI RCATGY 3 cut(s) 683, 1040, 1259
NspV TTCGAA 2 cut(s) 825, 1483
PaeI GCATGC 3 cut(s) 683, 1040, 1259
PaeR7I CTCGAG 1 cut(s) 1527
PagI TCATGA 2 cut(s) 418, 1506
PasI CCCWGGG 1 cut(s) 148
PciSI GCTCTTC 1 cut(s) 1341
PcsI WCGNNNNNNNCGW 1 cut(s) 841
PdmI GAANNNNTTC 1 cut(s) 1479
PfeI GAWTC 4 cut(s) 119, 487, 652, 1367
PkrI GCNGC 5 cut(s) 31, 256, 295, 298, 841
PleI GAGTC 2 cut(s) 31, 1102
PpsI GAGTC 2 cut(s) 31, 1102
PshBI ATTAAT 1 cut(s) 891
Psp6I CCWGG 2 cut(s) 147, 942
PspGI CCWGG 2 cut(s) 147, 942
PspN4I GGNNCC 1 cut(s) 1205
PspPI GGNCC 3 cut(s) 920, 1221, 1501
PspXI VCTCGAGB 1 cut(s) 1527
PsuI RGATCY 2 cut(s) 74, 748
RruI TCGCGA 1 cut(s) 221
RsaI GTAC 3 cut(s) 265, 1025, 1205
RsaNI GTAC 3 cut(s) 264, 1024, 1204
RseI CAYNNNNRTG 2 cut(s) 511, 800
SapI GCTCTTC 1 cut(s) 1341
SaqAI TTAA 3 cut(s) 108, 891, 1460
SatI GCNGC 5 cut(s) 30, 255, 294, 297, 840
Sau3AI GATC 8 cut(s) 74, 415, 559, 619, 748, 976, 1029, 1395
Sau96I GGNCC 3 cut(s) 920, 1221, 1501
SchI GAGTC 2 cut(s) 31, 1103
ScrFI CCNGG 2 cut(s) 149, 944
SduI GDGCHC 1 cut(s) 56
SfaNI GCATC 2 cut(s) 349, 1143
SfcI CTRYAG 1 cut(s) 168
Sfr274I CTCGAG 1 cut(s) 1527
SfuI TTCGAA 2 cut(s) 825, 1483
SinI GGWCC 1 cut(s) 920
SlaI CTCGAG 1 cut(s) 1527
SmiMI CAYNNNNRTG 2 cut(s) 511, 800
SmlI CTYRAG 4 cut(s) 1063, 1091, 1127, 1527
SmoI CTYRAG 4 cut(s) 1063, 1091, 1127, 1527
SphI GCATGC 3 cut(s) 683, 1040, 1259
Sse9I AATT 6 cut(s) 737, 776, 926, 972, 1110, 1188
SsiI CCGC 4 cut(s) 29, 294, 1106, 1324
SspI AATATT 2 cut(s) 899, 1465
SspMI CTAG 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 147, 942
TaaI ACNGT 3 cut(s) 16, 1060, 1286
TaiI ACGT 2 cut(s) 1051, 1299
TaqI TCGA 7 cut(s) 62, 825, 835, 1176, 1299, 1483, 1528
TasI AATT 6 cut(s) 737, 776, 926, 972, 1110, 1188
TatI WGTACW 2 cut(s) 263, 1023
TauI GCSGC 2 cut(s) 32, 296
TfiI GAWTC 4 cut(s) 119, 487, 652, 1367
Tru1I TTAA 3 cut(s) 108, 891, 1460
Tru9I TTAA 3 cut(s) 108, 891, 1460
TseFI GTSAC 1 cut(s) 10
TseI GCWGC 3 cut(s) 254, 296, 839
Tsp45I GTSAC 1 cut(s) 10
TspGWI ACGGA 2 cut(s) 30, 249
VpaK11BI GGWCC 1 cut(s) 920
VspI ATTAAT 1 cut(s) 891
XagI CCTNNNNNAGG 1 cut(s) 941
XapI RAATTY 3 cut(s) 926, 1110, 1188
XceI RCATGY 3 cut(s) 683, 1040, 1259
XcmI CCANNNNNNNNNTGG 1 cut(s) 775
XhoI CTCGAG 1 cut(s) 1527
XmnI GAANNNNTTC 1 cut(s) 1479
XspI CTAG 1 cut(s) 405
ZraI GACGTC 1 cut(s) 1297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.