Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

52025155 .. 52027793

Gene Structure 2639 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0418000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTCAATCAAGTTCGGAAGAATCCGACTTGTTCTCCATATTCACTGATTTATTTTTTGAAAAAGCAAAAGCAAAAGCAAAACCAAAACCACAATCCCAACCAAAACCACCACCACAACCAAAACCGAAGAGTACTCCTAGTCAACGTCAGGATGAGCTTGTGAAGAAATTTCCAGGGTCAAAGATTATTCGTCGTCCAAATCCAATGGAAGAAGCCGATGATTCAACTTACATTAAATTTCCAGAACATGACTGCGGGAATTATATGGAAAGATTCTATGAGGAGGACAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000988 GO:0000990 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006091 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006725 GO:0006807 GO:0006950 GO:0006970 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009314 GO:0009416 GO:0009507 GO:0009536 GO:0009553 GO:0009628 GO:0009637 GO:0009639 GO:0009651 GO:0009657 GO:0009658 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010114 GO:0010207 GO:0010218 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0015979 GO:0016043 GO:0016070 GO:0016987 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019684 GO:0022607 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0032774 GO:0033554 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043933 GO:0044085 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045935 GO:0046483 GO:0048229 GO:0048518 GO:0048522 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065003 GO:0065007 GO:0071214 GO:0071470 GO:0071472 GO:0071478 GO:0071482 GO:0071483 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0097659 GO:0104004 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2000142 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sigma70_r2 Sigma70_r3 Sigma70_r4

Protein Analysis

98

Amino Acids

11.34

Weight (kDa)

5.85

Isoelectric Point (pI)

75.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	258
AcsI	RAATTY	2 cut(s)	170, 239
AfaI	GTAC	1 cut(s)	136
AgsI	TTSAA	2 cut(s)	62, 228
AjnI	CCWGG	1 cut(s)	175
AluBI	AGCT	1 cut(s)	160
AluI	AGCT	1 cut(s)	160
ApoI	RAATTY	2 cut(s)	170, 239
BciT130I	CCWGG	1 cut(s)	177
BfaI	CTAG	1 cut(s)	141
BmcAI	AGTACT	1 cut(s)	136
Bme1390I	CCNGG	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	177
BsaJI	CCNNGG	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	20, 50
BseBI	CCWGG	1 cut(s)	177
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	1 cut(s)	160
BspACI	CCGC	1 cut(s)	258
BssECI	CCNNGG	1 cut(s)	176
Bst2UI	CCWGG	1 cut(s)	177
Bst6I	CTCTTC	1 cut(s)	125
BstF5I	GGATG	1 cut(s)	160
BstNI	CCWGG	1 cut(s)	177
BstSCI	CCNGG	1 cut(s)	175
BtsCI	GGATG	1 cut(s)	160
BtsIMutI	CAGTG	1 cut(s)	45
Csp6I	GTAC	1 cut(s)	135
CviAII	CATG	1 cut(s)	251
CviJI	RGCY	3 cut(s)	5, 160, 218
CviKI_1	RGCY	3 cut(s)	5, 160, 218
CviQI	GTAC	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	125
EarI	CTCTTC	1 cut(s)	125
EcoRII	CCWGG	1 cut(s)	175
FaeI	CATG	1 cut(s)	254
FaiI	YATR	5 cut(s)	41, 252, 267, 269, 282
FatI	CATG	1 cut(s)	250
FauI	CCCGC	1 cut(s)	251
FokI	GGATG	1 cut(s)	167
FspBI	CTAG	1 cut(s)	141
Hin1II	CATG	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HinfI	GANTC	3 cut(s)	23, 224, 276
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	2 cut(s)	19, 28
Hpy188III	TCNNGA	2 cut(s)	152, 245
Hpy8I	GTNNAC	1 cut(s)	146
Hpy99I	CGWCG	1 cut(s)	198
HpyCH4IV	ACGT	1 cut(s)	148
HpySE526I	ACGT	1 cut(s)	148
Hsp92II	CATG	1 cut(s)	254
LpnPI	CCDG	4 cut(s)	137, 162, 189, 258
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	148
MboII	GAAGA	4 cut(s)	32, 142, 178, 224
MluCI	AATT	4 cut(s)	170, 239, 262, 292
MmeI	TCCRAC	1 cut(s)	51
MnlI	CCTC	2 cut(s)	277, 280
MseI	TTAA	1 cut(s)	237
MspR9I	CCNGG	1 cut(s)	177
MvaI	CCWGG	1 cut(s)	177
NlaIII	CATG	1 cut(s)	254
PfeI	GAWTC	3 cut(s)	23, 224, 276
Psp6I	CCWGG	1 cut(s)	175
PspGI	CCWGG	1 cut(s)	175
RsaI	GTAC	1 cut(s)	136
RsaNI	GTAC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	237
ScaI	AGTACT	1 cut(s)	136
ScrFI	CCNGG	1 cut(s)	177
SetI	ASST	2 cut(s)	151, 162
Sse9I	AATT	4 cut(s)	170, 239, 262, 292
SsiI	CCGC	1 cut(s)	258
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	175
TaiI	ACGT	1 cut(s)	151
TasI	AATT	4 cut(s)	170, 239, 262, 292
TatI	WGTACW	1 cut(s)	134
TfiI	GAWTC	3 cut(s)	23, 224, 276
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	52
TspRI	CASTG	1 cut(s)	52
XapI	RAATTY	2 cut(s)	170, 239
XspI	CTAG	1 cut(s)	141
ZrmI	AGTACT	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.