Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

64125692 .. 64126968

Gene Structure 1277 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG428800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCAAAAAATGGACCGATGTCGTCGGAAGAGACCCCAAATCACTACTTCTGATCAGTCTGAAGAGGTTGTTAGCAGTGAATGGGAGTTCATTCATATGAGTGAGCAAGAAGAAGATCTCATCTATAGAATGTATAGACTTGTCGGAGAAAGGTGGGACTTAATAGCTGGTCGGGTTCCGGGTCGAACAGCAGTAGAATTGGAGAGGTTTTGGATAATGAGACATTGTGAGGTGTTTGCTGAGAAACGAAGGAAGCATAAGAAAGAAAACTCAAAAATTGTTCCACGTCGAACTTTCAGTGGATTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

103

Amino Acids

12.55

Weight (kDa)

9.56

Isoelectric Point (pI)

75.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	33 - 73	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	81
AjiI	CACGTC	1 cut(s)	287
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	2 cut(s)	25, 214
AspS9I	GGNCC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	13
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	2 cut(s)	25, 214
BfmI	CTRYAG	1 cut(s)	124
BglII	AGATCT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	13
BmgBI	CACGTC	1 cut(s)	287
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	180
BsaI	GGTCTC	1 cut(s)	25
BseMII	CTCAG	1 cut(s)	231
BsiSI	CCGG	1 cut(s)	179
BslFI	GGGAC	1 cut(s)	170
BsmAI	GTCTC	2 cut(s)	25, 214
BsmFI	GGGAC	1 cut(s)	170
Bso31I	GGTCTC	1 cut(s)	25
Bsp143I	GATC	2 cut(s)	52, 115
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	177
BspTNI	GGTCTC	1 cut(s)	25
BssMI	GATC	2 cut(s)	52, 115
Bst6I	CTCTTC	2 cut(s)	23, 57
BstDEI	CTNAG	1 cut(s)	240
BstKTI	GATC	2 cut(s)	55, 118
BstMAI	GTCTC	2 cut(s)	25, 214
BstMBI	GATC	2 cut(s)	52, 115
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	124
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtrI	CACGTC	1 cut(s)	287
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 304
Cfr13I	GGNCC	1 cut(s)	13
CviJI	RGCY	1 cut(s)	167
CviKI_1	RGCY	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	54, 117
DpnII	GATC	2 cut(s)	52, 115
Eam1104I	CTCTTC	2 cut(s)	23, 57
EarI	CTCTTC	2 cut(s)	23, 57
Eco31I	GGTCTC	1 cut(s)	25
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	81
FaiI	YATR	5 cut(s)	96, 98, 126, 135, 258
FaqI	GGGAC	1 cut(s)	170
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	52
HapII	CCGG	1 cut(s)	179
HpaII	CCGG	1 cut(s)	179
Hpy188I	TCNGA	4 cut(s)	27, 52, 61, 146
Hpy99I	CGWCG	2 cut(s)	27, 291
HpyAV	CCTTC	1 cut(s)	243
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	1 cut(s)	286
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	52, 115
LpnPI	CCDG	2 cut(s)	153, 192
MaeII	ACGT	1 cut(s)	286
MalI	GATC	2 cut(s)	54, 117
MboI	GATC	2 cut(s)	52, 115
MboII	GAAGA	4 cut(s)	40, 74, 122, 125
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	2 cut(s)	197, 276
MmeI	TCCRAC	2 cut(s)	5, 124
MnlI	CCTC	3 cut(s)	58, 198, 223
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	2 cut(s)	95, 99
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	180
NciI	CCSGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	2 cut(s)	52, 115
NlaIV	GGNNCC	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	95, 99
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	52, 115
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	6 cut(s)	69, 155, 169, 209, 234, 289
SfcI	CTRYAG	1 cut(s)	124
SgeI	CNNG	7 cut(s)	119, 152, 180, 185, 191, 192, 297
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	95, 99
Sse9I	AATT	2 cut(s)	197, 276
StyD4I	CCNGG	1 cut(s)	178
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	184, 289
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	2 cut(s)	197, 276
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	82, 304
TspDTI	ATGAA	2 cut(s)	79, 83
TspRI	CASTG	2 cut(s)	82, 304
VpaK11BI	GGWCC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.