Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

24222519 .. 24224064

Gene Structure 1546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1104200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGACAGACGTCGTTCACATAAGCAAGAAGCCAAGAGCACTGCCAATTCTGGCTCAGAAGAAGAAGTGAGTAGTATGAAATGGGAGTACGTAAAGATGAGTGAAGACGAGGTGGATCTGATCTACAGAATGTACAGACTCGTTGGAGACAGGTGGCATTTGATTGCGGGTCGGATTCCAGGTCGAAAAGCAGAAGAAATAGAGAGGTTCTGGATAATGGCAGATGGCGAAACATCCTCTCGGAAAAGAAACGAGCCTGCATATCTAACAAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010016 GO:0010033 GO:0010061 GO:0010063 GO:0010103 GO:0010374 GO:0010376 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0014070 GO:0019219 GO:0019222 GO:0022603 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0042493 GO:0042659 GO:0042660 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0046677 GO:0048367 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0060429 GO:0065007 GO:0080090 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1903888 GO:1903890 GO:1905421 GO:1905423 GO:2000026 GO:2000067 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

93

Amino Acids

10.93

Weight (kDa)

6.75

Isoelectric Point (pI)

84.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	32 - 73	9.2e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	13
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	1 cut(s)	123
AcyI	GRCGYC	1 cut(s)	10
AfaI	GTAC	2 cut(s)	89, 134
AjnI	CCWGG	1 cut(s)	178
Alw21I	GWGCWC	1 cut(s)	41
Alw26I	GTCTC	1 cut(s)	141
AlwI	GGATC	1 cut(s)	123
BbsI	GAAGAC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	41
BccI	CCATC	1 cut(s)	218
BciT130I	CCWGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	141
BfmI	CTRYAG	1 cut(s)	124
Bme1390I	CCNGG	1 cut(s)	180
BmrFI	CCNGG	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	9
BpiI	GAAGAC	1 cut(s)	111
BsaAI	YACGTR	1 cut(s)	91
BsaHI	GRCGYC	1 cut(s)	10
BseBI	CCWGG	1 cut(s)	180
BseGI	GGATG	1 cut(s)	233
BseMII	CTCAG	1 cut(s)	69
BsiHKAI	GWGCWC	1 cut(s)	41
BsmAI	GTCTC	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	41
Bsp1407I	TGTACA	1 cut(s)	132
Bsp143I	GATC	2 cut(s)	115, 120
BspACI	CCGC	1 cut(s)	167
BspCNI	CTCAG	1 cut(s)	68
BspPI	GGATC	1 cut(s)	123
BsrGI	TGTACA	1 cut(s)	132
BssMI	GATC	2 cut(s)	115, 120
BssNI	GRCGYC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	180
BstACI	GRCGYC	1 cut(s)	10
BstAUI	TGTACA	1 cut(s)	132
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	55
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	118, 123
BstMAI	GTCTC	1 cut(s)	141
BstMBI	GATC	2 cut(s)	115, 120
BstNI	CCWGG	1 cut(s)	180
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	124
BstSNI	TACGTA	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	111
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtsCI	GGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	1 cut(s)	39
Cac8I	GCNNGC	1 cut(s)	258
Csp6I	GTAC	2 cut(s)	88, 133
CviJI	RGCY	3 cut(s)	32, 54, 256
CviKI_1	RGCY	3 cut(s)	32, 54, 256
CviQI	GTAC	2 cut(s)	88, 133
DdeI	CTNAG	1 cut(s)	55
DpnI	GATC	2 cut(s)	117, 122
DpnII	GATC	2 cut(s)	115, 120
Eco105I	TACGTA	1 cut(s)	91
EcoRII	CCWGG	1 cut(s)	178
FaiI	YATR	3 cut(s)	21, 77, 262
FauI	CCCGC	1 cut(s)	160
FokI	GGATG	1 cut(s)	220
Hin1I	GRCGYC	1 cut(s)	10
HinfI	GANTC	2 cut(s)	138, 175
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	58, 120, 174, 243
Hpy188III	TCNNGA	1 cut(s)	211
Hpy8I	GTNNAC	1 cut(s)	17
Hpy99I	CGWCG	1 cut(s)	15
HpyCH4IV	ACGT	2 cut(s)	10, 90
HpyCH4V	TGCA	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	55
HpySE526I	ACGT	2 cut(s)	10, 90
Hsp92I	GRCGYC	1 cut(s)	10
Kzo9I	GATC	2 cut(s)	115, 120
LpnPI	CCDG	6 cut(s)	36, 136, 165, 192, 196, 270
MaeII	ACGT	2 cut(s)	10, 90
MalI	GATC	2 cut(s)	117, 122
MboI	GATC	2 cut(s)	115, 120
MboII	GAAGA	4 cut(s)	71, 74, 116, 206
MflI	RGATCY	1 cut(s)	115
MhlI	GDGCHC	1 cut(s)	41
MluCI	AATT	1 cut(s)	46
MlyI	GAGTC	1 cut(s)	132
MmeI	TCCRAC	2 cut(s)	124, 152
MnlI	CCTC	3 cut(s)	103, 198, 247
MspR9I	CCNGG	1 cut(s)	180
MvaI	CCWGG	1 cut(s)	180
NdeII	GATC	2 cut(s)	115, 120
PfeI	GAWTC	1 cut(s)	175
PleI	GAGTC	1 cut(s)	132
PpsI	GAGTC	1 cut(s)	132
Ppu21I	YACGTR	1 cut(s)	91
PshAI	GACNNNNGTC	1 cut(s)	9
Psp6I	CCWGG	1 cut(s)	178
PspGI	CCWGG	1 cut(s)	178
PsuI	RGATCY	1 cut(s)	115
RsaI	GTAC	2 cut(s)	89, 134
RsaNI	GTAC	2 cut(s)	88, 133
Sau3AI	GATC	2 cut(s)	115, 120
SchI	GAGTC	1 cut(s)	132
ScrFI	CCNGG	1 cut(s)	180
SduI	GDGCHC	1 cut(s)	41
SetI	ASST	6 cut(s)	13, 93, 114, 155, 184, 209
SfcI	CTRYAG	1 cut(s)	124
SnaBI	TACGTA	1 cut(s)	91
Sse9I	AATT	1 cut(s)	46
SsiI	CCGC	1 cut(s)	167
StyD4I	CCNGG	1 cut(s)	178
TaiI	ACGT	2 cut(s)	13, 93
TaqI	TCGA	1 cut(s)	184
TasI	AATT	1 cut(s)	46
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	175
TscAI	CASTG	1 cut(s)	46
TspDTI	ATGAA	1 cut(s)	92
TspRI	CASTG	1 cut(s)	46
ZraI	GACGTC	1 cut(s)	11

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.