Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Forward (+)

11124062 .. 11131351

Gene Structure 7290 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG149900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGGGTTGAGGCATAGTTGTCATAGCTTCCGCATTAGAAAAGCAGAAGTGAGCAGTATGGACTGCGAGCTCATAAAGATGAGTGAACAAGAGAAGGATCTGATCAACAGGATGTACAGAATGGTTGGAGATAGGTGGCATTTGATAGCAGGTCGGATACCGGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATAATAACACATACCGAGTCGTTTGCCCAGAATAGAGAAGAGAATGGAGCAAAGAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

84

Amino Acids

9.98

Weight (kDa)

8.74

Isoelectric Point (pI)

63.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	27 - 65	1.1e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	140
AciI	CCGC	1 cut(s)	31
AclWI	GGATC	1 cut(s)	105
AfaI	GTAC	1 cut(s)	116
AluBI	AGCT	2 cut(s)	27, 70
AluI	AGCT	2 cut(s)	27, 70
Alw21I	GWGCWC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	105
AsuC2I	CCSGG	1 cut(s)	162
BanII	GRGCYC	1 cut(s)	72
Bbv12I	GWGCWC	1 cut(s)	72
BcgI	CGANNNNNNTGC	2 cut(s)	200, 234
BciVI	GTATCC	1 cut(s)	150
BclI	TGATCA	1 cut(s)	102
BcnI	CCSGG	1 cut(s)	162
BfuAI	ACCTGC	1 cut(s)	140
BfuI	GTATCC	1 cut(s)	150
Bme1390I	CCNGG	1 cut(s)	162
BmrFI	CCNGG	1 cut(s)	162
BpuMI	CCSGG	1 cut(s)	162
BseGI	GGATG	1 cut(s)	117
BsiHKAI	GWGCWC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	72
Bsp1407I	TGTACA	1 cut(s)	114
Bsp143I	GATC	2 cut(s)	97, 102
BspACI	CCGC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	140
BspPI	GGATC	1 cut(s)	105
BsrGI	TGTACA	1 cut(s)	114
BssMI	GATC	2 cut(s)	97, 102
Bst6I	CTCTTC	1 cut(s)	228
BstAUI	TGTACA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	68
BstF5I	GGATG	1 cut(s)	117
BstKTI	GATC	2 cut(s)	100, 105
BstMBI	GATC	2 cut(s)	97, 102
BstSCI	CCNGG	1 cut(s)	160
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuI	GTATCC	1 cut(s)	150
BtsCI	GGATG	1 cut(s)	117
BveI	ACCTGC	1 cut(s)	140
Cac8I	GCNNGC	1 cut(s)	68
Csp6I	GTAC	1 cut(s)	115
CviJI	RGCY	2 cut(s)	27, 70
CviKI_1	RGCY	2 cut(s)	27, 70
CviQI	GTAC	1 cut(s)	115
DpnI	GATC	2 cut(s)	99, 104
DpnII	GATC	2 cut(s)	97, 102
Eam1104I	CTCTTC	1 cut(s)	228
EarI	CTCTTC	1 cut(s)	228
Ecl136II	GAGCTC	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	72
Eco53kI	GAGCTC	1 cut(s)	70
EcoICRI	GAGCTC	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	72
FaiI	YATR	5 cut(s)	15, 24, 59, 74, 207
FbaI	TGATCA	1 cut(s)	102
FokI	GGATG	1 cut(s)	124
FriOI	GRGCYC	1 cut(s)	72
HapII	CCGG	1 cut(s)	161
HinfI	GANTC	2 cut(s)	189, 212
HpaII	CCGG	1 cut(s)	161
Hpy166II	GTNNAC	1 cut(s)	86
Hpy188I	TCNGA	2 cut(s)	102, 156
Hpy188III	TCNNGA	1 cut(s)	193
Hpy8I	GTNNAC	1 cut(s)	86
HpyAV	CCTTC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	97, 102
LmnI	GCTCC	1 cut(s)	242
LpnPI	CCDG	5 cut(s)	94, 135, 174, 178, 236
MalI	GATC	2 cut(s)	99, 104
MboI	GATC	2 cut(s)	97, 102
MboII	GAAGA	2 cut(s)	188, 245
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	72
MluCI	AATT	1 cut(s)	250
MlyI	GAGTC	1 cut(s)	221
MmeI	TCCRAC	2 cut(s)	106, 134
MnlI	CCTC	1 cut(s)	3
MslI	CAYNNNNRTG	1 cut(s)	77
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	1 cut(s)	162
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	97, 102
PfeI	GAWTC	1 cut(s)	189
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp124BI	GAGCTC	1 cut(s)	72
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	1 cut(s)	116
RsaNI	GTAC	1 cut(s)	115
RseI	CAYNNNNRTG	1 cut(s)	77
SacI	GAGCTC	1 cut(s)	72
Sau3AI	GATC	2 cut(s)	97, 102
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	1 cut(s)	162
SduI	GDGCHC	1 cut(s)	72
SetI	ASST	4 cut(s)	29, 72, 137, 154
SgeI	CNNG	9 cut(s)	79, 101, 121, 162, 173, 174, 205, 223, 235
SmiMI	CAYNNNNRTG	1 cut(s)	77
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	31
SstI	GAGCTC	1 cut(s)	72
StyD4I	CCNGG	1 cut(s)	160
TasI	AATT	1 cut(s)	250
TatI	WGTACW	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.