Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

29219966 .. 29221742

Gene Structure 1777 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G307600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCATGATGACAAAGTCTGGTTTCTAGCGCAGATCATGGACCGATGTCGTCGAAAACGACCCAAAACCGCCACTTCTGAGTCTGACGAGGTTATTAGCAATGAATGGGAATTCATAAACATGACTGAACAAGAAGAAGATCTCCTCTATAGAATGTATAGGCTCGTTGGGCCCAGGTGGGATTTAATAGCCGGTCGGATTCCAGGTCGAAAACCAGAAGAATTAGAGAGATATTGGATCATGAGACATTGTGATACGTTTGCTGACAAAAGAAATCAGCAAACGAAAGACAACTCTAAAAAATGTTGGTCGTCGAATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

108

Amino Acids

13.06

Weight (kDa)

7.71

Isoelectric Point (pI)

50.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	1 cut(s)	110
AjnI	CCWGG	2 cut(s)	173, 202
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	1 cut(s)	170
ApaI	GGGCCC	1 cut(s)	174
ApoI	RAATTY	1 cut(s)	110
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	3 cut(s)	40, 170, 171
AvaII	GGWCC	1 cut(s)	40
BaeGI	GKGCMC	1 cut(s)	174
BanII	GRGCYC	1 cut(s)	174
BciT130I	CCWGG	2 cut(s)	175, 204
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	26
BfmI	CTRYAG	1 cut(s)	148
BglII	AGATCT	1 cut(s)	139
Bme1390I	CCNGG	2 cut(s)	175, 204
Bme18I	GGWCC	1 cut(s)	40
BmgT120I	GGNCC	3 cut(s)	40, 170, 171
BmiI	GGNNCC	1 cut(s)	172
BmrFI	CCNGG	2 cut(s)	175, 204
BoxI	GACNNNNGTC	1 cut(s)	45
BsaJI	CCNNGG	1 cut(s)	173
Bse118I	RCCGGY	1 cut(s)	191
Bse3DI	GCAATG	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	175, 204
BseDI	CCNNGG	1 cut(s)	173
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	69
BseRI	GAGGAG	1 cut(s)	134
BseSI	GKGCMC	1 cut(s)	174
Bsh1285I	CGRYCG	1 cut(s)	196
BshFI	GGCC	1 cut(s)	172
BsiEI	CGRYCG	1 cut(s)	196
BsiSI	CCGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	238
BsnI	GGCC	1 cut(s)	172
Bsp120I	GGGCCC	1 cut(s)	170
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	3 cut(s)	33, 139, 237
BspACI	CCGC	1 cut(s)	69
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	70
BspHI	TCATGA	1 cut(s)	240
BspLI	GGNNCC	1 cut(s)	172
BspPI	GGATC	1 cut(s)	245
BsrDI	GCAATG	1 cut(s)	106
BsrFI	RCCGGY	1 cut(s)	191
BssAI	RCCGGY	1 cut(s)	191
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	3 cut(s)	33, 139, 237
Bst2UI	CCWGG	2 cut(s)	175, 204
BstDEI	CTNAG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	3 cut(s)	36, 142, 240
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	3 cut(s)	33, 139, 237
BstMCI	CGRYCG	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	169
BstNI	CCWGG	2 cut(s)	175, 204
BstPAI	GACNNNNGTC	1 cut(s)	45
BstSCI	CCNGG	2 cut(s)	173, 202
BstSFI	CTRYAG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	174
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	172
CciI	TCATGA	1 cut(s)	240
CfoI	GCGC	1 cut(s)	31
Cfr10I	RCCGGY	1 cut(s)	191
Cfr13I	GGNCC	3 cut(s)	40, 170, 171
CviAII	CATG	4 cut(s)	5, 37, 121, 241
CviJI	RGCY	3 cut(s)	163, 172, 191
CviKI_1	RGCY	3 cut(s)	163, 172, 191
DdeI	CTNAG	1 cut(s)	78
DpnI	GATC	3 cut(s)	35, 141, 239
DpnII	GATC	3 cut(s)	33, 139, 237
Eco24I	GRGCYC	1 cut(s)	174
Eco47I	GGWCC	1 cut(s)	40
EcoRI	GAATTC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	173, 202
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	4 cut(s)	8, 40, 124, 244
FaiI	YATR	7 cut(s)	6, 38, 116, 122, 150, 159, 242
FatI	CATG	4 cut(s)	4, 36, 120, 240
FriOI	GRGCYC	1 cut(s)	174
FspBI	CTAG	1 cut(s)	26
GlaI	GCGC	1 cut(s)	30
HaeIII	GGCC	1 cut(s)	172
HapII	CCGG	1 cut(s)	192
HhaI	GCGC	1 cut(s)	31
Hin1II	CATG	4 cut(s)	8, 40, 124, 244
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HinfI	GANTC	2 cut(s)	80, 199
HpaII	CCGG	1 cut(s)	192
Hpy188I	TCNGA	3 cut(s)	79, 85, 198
Hpy188III	TCNNGA	1 cut(s)	241
Hpy99I	CGWCG	2 cut(s)	54, 316
HpyCH4IV	ACGT	1 cut(s)	257
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	1 cut(s)	169
HpyF3I	CTNAG	1 cut(s)	78
HpySE526I	ACGT	1 cut(s)	257
Hsp92II	CATG	4 cut(s)	8, 40, 124, 244
HspAI	GCGC	1 cut(s)	29
Kzo9I	GATC	3 cut(s)	33, 139, 237
LpnPI	CCDG	7 cut(s)	4, 160, 187, 189, 205, 216, 228
MaeI	CTAG	1 cut(s)	26
MaeII	ACGT	1 cut(s)	257
MalI	GATC	3 cut(s)	35, 141, 239
MboI	GATC	3 cut(s)	33, 139, 237
MboII	GAAGA	3 cut(s)	146, 149, 230
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	110, 221
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	1 cut(s)	176
MnlI	CCTC	2 cut(s)	82, 155
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	2 cut(s)	185, 322
MslI	CAYNNNNRTG	1 cut(s)	119
MspI	CCGG	1 cut(s)	192
MspR9I	CCNGG	2 cut(s)	175, 204
MvaI	CCWGG	2 cut(s)	175, 204
MwoI	GCNNNNNNNGC	1 cut(s)	169
NdeII	GATC	3 cut(s)	33, 139, 237
NlaIII	CATG	4 cut(s)	8, 40, 124, 244
NlaIV	GGNNCC	1 cut(s)	172
NsiI	ATGCAT	1 cut(s)	6
PagI	TCATGA	1 cut(s)	240
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	199
PflFI	GACNNNGTC	1 cut(s)	14
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PshAI	GACNNNNGTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	173, 202
PspGI	CCWGG	2 cut(s)	173, 202
PspN4I	GGNNCC	1 cut(s)	172
PspOMI	GGGCCC	1 cut(s)	170
PspPI	GGNCC	3 cut(s)	40, 170, 171
PsuI	RGATCY	1 cut(s)	139
PsyI	GACNNNGTC	1 cut(s)	14
RseI	CAYNNNNRTG	1 cut(s)	119
SaqAI	TTAA	2 cut(s)	185, 322
Sau3AI	GATC	3 cut(s)	33, 139, 237
Sau96I	GGNCC	3 cut(s)	40, 170, 171
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	2 cut(s)	175, 204
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	4 cut(s)	93, 179, 208, 260
SfcI	CTRYAG	1 cut(s)	148
SinI	GGWCC	1 cut(s)	40
SmiMI	CAYNNNNRTG	1 cut(s)	119
Sse9I	AATT	2 cut(s)	110, 221
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	173, 202
TaiI	ACGT	1 cut(s)	260
TaqI	TCGA	3 cut(s)	52, 208, 314
TaqII	GACCGA	1 cut(s)	57
TasI	AATT	2 cut(s)	110, 221
TfiI	GAWTC	1 cut(s)	199
Tru1I	TTAA	2 cut(s)	185, 322
Tru9I	TTAA	2 cut(s)	185, 322
TspDTI	ATGAA	2 cut(s)	103, 117
Tth111I	GACNNNGTC	1 cut(s)	14
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	1 cut(s)	110
XspI	CTAG	1 cut(s)	26
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.