Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Forward (+)

2200835 .. 2202101

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026327

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCAAAAAATGGACCGATGTCGTCGGAAGCGACCCAAAATCACTACTTCTGATCAATCTGAAGAGGTTGTTAGCAGTGAATGGGAGTTCATTCATATGAGTGAGCAAGAAGAAGATCTCATCTATAGAATGTATAGACTTGTCGGAGAAAGGTGGGATTTAATAGCTGGTCGGGTTCCGGGTCGAACAGCAGTAGAATTGGAGAGGTTTTGGATAATGAGACATTGTGAGGTGTTTGCTGAGAAACGAAGGAAGCATAAGAAAGAAAACTCAAAAATTGTTCCGCGTCAAACTTTCAGTGGATTTGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

104

Amino Acids

12.52

Weight (kDa)

9.51

Isoelectric Point (pI)

68.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	33 - 73	1.1e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	286
AciI	CCGC	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	81
AluBI	AGCT	1 cut(s)	167
AluI	AGCT	1 cut(s)	167
Alw26I	GTCTC	1 cut(s)	214
AspS9I	GGNCC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	180
AvaII	GGWCC	1 cut(s)	13
BclI	TGATCA	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	180
BcoDI	GTCTC	1 cut(s)	214
BfmI	CTRYAG	1 cut(s)	124
BglII	AGATCT	1 cut(s)	115
Bme1390I	CCNGG	1 cut(s)	180
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	1 cut(s)	177
BmrFI	CCNGG	1 cut(s)	180
BoxI	GACNNNNGTC	1 cut(s)	18
BpuMI	CCSGG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	231
Bsh1236I	CGCG	1 cut(s)	286
BsiSI	CCGG	1 cut(s)	179
BsmAI	GTCTC	1 cut(s)	214
Bsp143I	GATC	2 cut(s)	52, 115
BspACI	CCGC	1 cut(s)	284
BspCNI	CTCAG	1 cut(s)	232
BspFNI	CGCG	1 cut(s)	286
BspLI	GGNNCC	1 cut(s)	177
BssMI	GATC	2 cut(s)	52, 115
Bst6I	CTCTTC	1 cut(s)	57
BstDEI	CTNAG	1 cut(s)	240
BstFNI	CGCG	1 cut(s)	286
BstKTI	GATC	2 cut(s)	55, 118
BstMAI	GTCTC	1 cut(s)	214
BstMBI	GATC	2 cut(s)	52, 115
BstPAI	GACNNNNGTC	1 cut(s)	18
BstSCI	CCNGG	1 cut(s)	178
BstSFI	CTRYAG	1 cut(s)	124
BstUI	CGCG	1 cut(s)	286
BstX2I	RGATCY	1 cut(s)	115
BstYI	RGATCY	1 cut(s)	115
BtsI	GCAGTG	1 cut(s)	82
BtsIMutI	CAGTG	2 cut(s)	82, 304
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	275
CviJI	RGCY	1 cut(s)	167
CviKI_1	RGCY	1 cut(s)	167
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	2 cut(s)	54, 117
DpnII	GATC	2 cut(s)	52, 115
Eam1104I	CTCTTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	57
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	81
FaiI	YATR	5 cut(s)	96, 98, 126, 135, 258
FauNDI	CATATG	1 cut(s)	96
FbaI	TGATCA	1 cut(s)	52
HapII	CCGG	1 cut(s)	179
HgaI	GACGC	1 cut(s)	275
HpaII	CCGG	1 cut(s)	179
Hpy188I	TCNGA	4 cut(s)	27, 52, 61, 146
Hpy99I	CGWCG	1 cut(s)	27
HpyAV	CCTTC	1 cut(s)	243
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	240
Ksp22I	TGATCA	1 cut(s)	52
Kzo9I	GATC	2 cut(s)	52, 115
LpnPI	CCDG	2 cut(s)	153, 192
MalI	GATC	2 cut(s)	54, 117
MboI	GATC	2 cut(s)	52, 115
MboII	GAAGA	3 cut(s)	74, 122, 125
MflI	RGATCY	1 cut(s)	115
MluCI	AATT	2 cut(s)	197, 276
MmeI	TCCRAC	2 cut(s)	5, 124
MnlI	CCTC	3 cut(s)	58, 198, 223
MseI	TTAA	1 cut(s)	161
MslI	CAYNNNNRTG	2 cut(s)	95, 99
MspI	CCGG	1 cut(s)	179
MspR9I	CCNGG	1 cut(s)	180
MvnI	CGCG	1 cut(s)	286
NciI	CCSGG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	96
NdeII	GATC	2 cut(s)	52, 115
NlaIV	GGNNCC	1 cut(s)	177
PcsI	WCGNNNNNNNCGW	1 cut(s)	28
PshAI	GACNNNNGTC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	177
PspPI	GGNCC	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	115
RseI	CAYNNNNRTG	2 cut(s)	95, 99
SaqAI	TTAA	1 cut(s)	161
Sau3AI	GATC	2 cut(s)	52, 115
Sau96I	GGNCC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	180
SetI	ASST	5 cut(s)	69, 155, 169, 209, 234
SfcI	CTRYAG	1 cut(s)	124
SgeI	CNNG	7 cut(s)	119, 152, 180, 185, 191, 192, 297
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	2 cut(s)	95, 99
Sse9I	AATT	2 cut(s)	197, 276
SsiI	CCGC	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	178
TaqI	TCGA	1 cut(s)	184
TaqII	GACCGA	1 cut(s)	30
TasI	AATT	2 cut(s)	197, 276
Tru1I	TTAA	1 cut(s)	161
Tru9I	TTAA	1 cut(s)	161
TscAI	CASTG	2 cut(s)	82, 304
TspDTI	ATGAA	2 cut(s)	79, 83
TspRI	CASTG	2 cut(s)	82, 304
VpaK11BI	GGWCC	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.