Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

34779139 .. 34781091

Gene Structure 1953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1285700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGACCGATGTCGTCGGAAGCGACCCCAAATCACCATTAGTGATCAATCTGAAGAGGTTATTAGCAATGAATGGGAATTCATAAACATGACTGAACAAGAAGAAGATATCCTCTGTCGAATGTATAGGCTCGTTGGACCCAGGTGGGATTTAATAGCCGGTCGGATTCCAGGTCGAAAAGCAGAAGAACTAGAGAGGTTTTGGATCATGAAGCATTGTGATACGTTTGCTGACAAACGAAATCAGCATAAGAAAGAGGACGCTAAAATTGTTCGTCGAATGTTTAATGGATTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

100

Amino Acids

12.1

Weight (kDa)

8.9

Isoelectric Point (pI)

59.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	30 - 69	1.6e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	212
AcsI	RAATTY	1 cut(s)	77
AcuI	CTGAAG	1 cut(s)	72
AjnI	CCWGG	2 cut(s)	140, 169
AlwI	GGATC	1 cut(s)	212
ApoI	RAATTY	1 cut(s)	77
AspS9I	GGNCC	2 cut(s)	4, 137
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	2 cut(s)	4, 137
BciT130I	CCWGG	2 cut(s)	142, 171
BclI	TGATCA	1 cut(s)	43
BfaI	CTAG	1 cut(s)	191
Bme1390I	CCNGG	2 cut(s)	142, 171
Bme18I	GGWCC	2 cut(s)	4, 137
BmgT120I	GGNCC	2 cut(s)	4, 137
BmiI	GGNNCC	1 cut(s)	139
BmrFI	CCNGG	2 cut(s)	142, 171
BoxI	GACNNNNGTC	1 cut(s)	9
BsaJI	CCNNGG	1 cut(s)	140
Bse118I	RCCGGY	1 cut(s)	158
Bse3DI	GCAATG	1 cut(s)	73
BseBI	CCWGG	2 cut(s)	142, 171
BseDI	CCNNGG	1 cut(s)	140
BseMI	GCAATG	1 cut(s)	73
Bsh1285I	CGRYCG	1 cut(s)	163
BsiEI	CGRYCG	1 cut(s)	163
BsiSI	CCGG	1 cut(s)	159
Bsp143I	GATC	2 cut(s)	43, 204
BspHI	TCATGA	1 cut(s)	207
BspLI	GGNNCC	1 cut(s)	139
BspPI	GGATC	1 cut(s)	212
BsrDI	GCAATG	1 cut(s)	73
BsrFI	RCCGGY	1 cut(s)	158
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	1 cut(s)	140
BssMI	GATC	2 cut(s)	43, 204
Bst2UI	CCWGG	2 cut(s)	142, 171
Bst6I	CTCTTC	1 cut(s)	48
BstKTI	GATC	2 cut(s)	46, 207
BstMBI	GATC	2 cut(s)	43, 204
BstMCI	CGRYCG	1 cut(s)	163
BstNI	CCWGG	2 cut(s)	142, 171
BstPAI	GACNNNNGTC	1 cut(s)	9
BstSCI	CCNGG	2 cut(s)	140, 169
CciI	TCATGA	1 cut(s)	207
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	4, 137
CseI	GACGC	1 cut(s)	269
CviAII	CATG	2 cut(s)	88, 208
CviJI	RGCY	2 cut(s)	130, 158
CviKI_1	RGCY	2 cut(s)	130, 158
DpnI	GATC	2 cut(s)	45, 206
DpnII	GATC	2 cut(s)	43, 204
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco32I	GATATC	1 cut(s)	109
Eco47I	GGWCC	2 cut(s)	4, 137
Eco57I	CTGAAG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	140, 169
EcoRV	GATATC	1 cut(s)	109
FaeI	CATG	2 cut(s)	91, 211
FaiI	YATR	5 cut(s)	83, 89, 126, 209, 249
FatI	CATG	2 cut(s)	87, 207
FbaI	TGATCA	1 cut(s)	43
FspBI	CTAG	1 cut(s)	191
HapII	CCGG	1 cut(s)	159
HgaI	GACGC	1 cut(s)	269
Hin1II	CATG	2 cut(s)	91, 211
HinfI	GANTC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	159
HphI	GGTGA	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	18, 52, 165
Hpy188III	TCNNGA	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	18, 279
HpyCH4IV	ACGT	1 cut(s)	224
HpySE526I	ACGT	1 cut(s)	224
Hsp92II	CATG	2 cut(s)	91, 211
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	2 cut(s)	43, 204
LpnPI	CCDG	5 cut(s)	127, 154, 156, 172, 183
MaeI	CTAG	1 cut(s)	191
MaeII	ACGT	1 cut(s)	224
MalI	GATC	2 cut(s)	45, 206
MboI	GATC	2 cut(s)	43, 204
MboII	GAAGA	4 cut(s)	65, 113, 116, 197
MluCI	AATT	2 cut(s)	77, 267
MmeI	TCCRAC	2 cut(s)	115, 143
MnlI	CCTC	4 cut(s)	49, 122, 189, 250
MseI	TTAA	3 cut(s)	152, 285, 294
MslI	CAYNNNNRTG	1 cut(s)	86
MspI	CCGG	1 cut(s)	159
MspR9I	CCNGG	2 cut(s)	142, 171
MvaI	CCWGG	2 cut(s)	142, 171
NdeII	GATC	2 cut(s)	43, 204
NlaIII	CATG	2 cut(s)	91, 211
NlaIV	GGNNCC	1 cut(s)	139
PagI	TCATGA	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	166
PshAI	GACNNNNGTC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	140, 169
PspGI	CCWGG	2 cut(s)	140, 169
PspN4I	GGNNCC	1 cut(s)	139
PspPI	GGNCC	2 cut(s)	4, 137
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	3 cut(s)	152, 285, 294
Sau3AI	GATC	2 cut(s)	43, 204
Sau96I	GGNCC	2 cut(s)	4, 137
ScrFI	CCNGG	2 cut(s)	142, 171
SetI	ASST	5 cut(s)	60, 146, 175, 200, 227
SinI	GGWCC	2 cut(s)	4, 137
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	2 cut(s)	77, 267
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	2 cut(s)	140, 169
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	118, 175, 277
TaqII	GACCGA	1 cut(s)	21
TasI	AATT	2 cut(s)	77, 267
TfiI	GAWTC	1 cut(s)	166
Tru1I	TTAA	3 cut(s)	152, 285, 294
Tru9I	TTAA	3 cut(s)	152, 285, 294
TspDTI	ATGAA	3 cut(s)	70, 84, 224
VpaK11BI	GGWCC	2 cut(s)	4, 137
XapI	RAATTY	1 cut(s)	77
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.