Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

30875522 .. 30877340

Gene Structure 1819 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1215600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGACTGAACAAGAAGAAGATCTCATATATAGAATGTATAGGTTTGTTGGACCCAGATGGGATTTAATAGCTGGGCGGATTCCAGGTCGAAAAGCAGAAGTACTAGAGAGGTTCTGGATCATGAGACATTGTGATGCGTTTGCTGAAAAACGAAATCAACGTAAGATAGAGGGCTCTAATATTGATCGTCGTCAAATGTTTAATGGATTTAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

72

Amino Acids

8.71

Weight (kDa)

9.73

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	2 - 41	2.8e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	76
AclWI	GGATC	1 cut(s)	125
AfaI	GTAC	1 cut(s)	102
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	1 cut(s)	71
AluI	AGCT	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	118
AlwI	GGATC	1 cut(s)	125
AspS9I	GGNCC	1 cut(s)	50
AvaII	GGWCC	1 cut(s)	50
BanII	GRGCYC	1 cut(s)	176
BccI	CCATC	1 cut(s)	51
BciT130I	CCWGG	1 cut(s)	84
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	1 cut(s)	104
BglII	AGATCT	1 cut(s)	19
BmcAI	AGTACT	1 cut(s)	102
Bme1390I	CCNGG	1 cut(s)	84
Bme18I	GGWCC	1 cut(s)	50
BmgT120I	GGNCC	1 cut(s)	50
BmiI	GGNNCC	1 cut(s)	52
BmrFI	CCNGG	1 cut(s)	84
BmsI	GCATC	1 cut(s)	124
BseBI	CCWGG	1 cut(s)	84
BseYI	CCCAGC	1 cut(s)	71
BsmAI	GTCTC	1 cut(s)	118
Bsp1286I	GDGCHC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	19, 117, 184
BspACI	CCGC	1 cut(s)	76
BspHI	TCATGA	1 cut(s)	120
BspLI	GGNNCC	1 cut(s)	52
BspPI	GGATC	1 cut(s)	125
BssMI	GATC	3 cut(s)	19, 117, 184
Bst2UI	CCWGG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	22, 120, 187
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	19, 117, 184
BstNI	CCWGG	1 cut(s)	84
BstSCI	CCNGG	1 cut(s)	82
BstX2I	RGATCY	1 cut(s)	19
BstYI	RGATCY	1 cut(s)	19
CciI	TCATGA	1 cut(s)	120
Cfr13I	GGNCC	1 cut(s)	50
Csp6I	GTAC	1 cut(s)	101
CviAII	CATG	1 cut(s)	121
CviJI	RGCY	2 cut(s)	71, 174
CviKI_1	RGCY	2 cut(s)	71, 174
CviQI	GTAC	1 cut(s)	101
DpnI	GATC	3 cut(s)	21, 119, 186
DpnII	GATC	3 cut(s)	19, 117, 184
EciI	GGCGGA	1 cut(s)	91
Eco24I	GRGCYC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	176
FaeI	CATG	1 cut(s)	124
FaiI	YATR	5 cut(s)	26, 28, 30, 39, 122
FatI	CATG	1 cut(s)	120
FriOI	GRGCYC	1 cut(s)	176
FspBI	CTAG	1 cut(s)	104
GsaI	CCCAGC	1 cut(s)	75
Hin1II	CATG	1 cut(s)	124
HinfI	GANTC	1 cut(s)	79
Hpy188III	TCNNGA	2 cut(s)	115, 121
Hpy99I	CGWCG	1 cut(s)	192
HpyCH4IV	ACGT	1 cut(s)	160
HpySE526I	ACGT	1 cut(s)	160
Hsp92II	CATG	1 cut(s)	124
Kzo9I	GATC	3 cut(s)	19, 117, 184
LpnPI	CCDG	5 cut(s)	57, 67, 69, 96, 100
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	104
MaeII	ACGT	1 cut(s)	160
MalI	GATC	3 cut(s)	21, 119, 186
MboI	GATC	3 cut(s)	19, 117, 184
MboII	GAAGA	2 cut(s)	26, 29
MflI	RGATCY	1 cut(s)	19
MhlI	GDGCHC	1 cut(s)	176
MmeI	TCCRAC	1 cut(s)	28
MnlI	CCTC	2 cut(s)	102, 163
MseI	TTAA	3 cut(s)	65, 201, 210
MslI	CAYNNNNRTG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	84
MvaI	CCWGG	1 cut(s)	84
NdeII	GATC	3 cut(s)	19, 117, 184
NlaIII	CATG	1 cut(s)	124
NlaIV	GGNNCC	1 cut(s)	52
PagI	TCATGA	1 cut(s)	120
PcsI	WCGNNNNNNNCGW	1 cut(s)	157
PfeI	GAWTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	71
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	52
PspPI	GGNCC	1 cut(s)	50
PsuI	RGATCY	1 cut(s)	19
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	65, 201, 210
Sau3AI	GATC	3 cut(s)	19, 117, 184
Sau96I	GGNCC	1 cut(s)	50
ScaI	AGTACT	1 cut(s)	102
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	176
SetI	ASST	5 cut(s)	44, 73, 88, 113, 163
SfaNI	GCATC	1 cut(s)	124
SgeI	CNNG	8 cut(s)	23, 66, 84, 95, 96, 116, 127, 133
SinI	GGWCC	1 cut(s)	50
SmiMI	CAYNNNNRTG	1 cut(s)	132
SsiI	CCGC	1 cut(s)	76
SspI	AATATT	1 cut(s)	181
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	82
TaiI	ACGT	1 cut(s)	163
TaqI	TCGA	1 cut(s)	88
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	3 cut(s)	65, 201, 210
Tru9I	TTAA	3 cut(s)	65, 201, 210
VpaK11BI	GGWCC	1 cut(s)	50
XspI	CTAG	1 cut(s)	104
ZrmI	AGTACT	1 cut(s)	102

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.