Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Forward (+)

12053101 .. 12054362

Gene Structure 1262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G012700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGAGTCAGAATATGGATAATCTTCTACAAGATAGTACCATTTCCATTTCCAGTAGTAGTATTACTACTTCCATTAACTCAGAAGAAGTGAGCAGTATGGACTGCGAGCTCATAAATATGAGTGAACAAGAGAAGGATCTGATCAACAGGATGTACAGAATGGTTGGAGATAGGTGGCATTTGATAGCAGGTCGGATACCGGGTCGTAAAGCAGAAGAAATAGAGAGATTCTGGATAATGACACATACCGAGTCGTTTGCCCAGAATAGAGAAGAGAATGGAGCAAAGAATTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

98

Amino Acids

11.29

Weight (kDa)

4.81

Isoelectric Point (pI)

67.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	40 - 80	7.3e-07	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	179
AclWI	GGATC	1 cut(s)	144
AfaI	GTAC	2 cut(s)	37, 155
AluBI	AGCT	1 cut(s)	109
AluI	AGCT	1 cut(s)	109
Alw21I	GWGCWC	1 cut(s)	111
AlwI	GGATC	1 cut(s)	144
AsuC2I	CCSGG	1 cut(s)	201
BanII	GRGCYC	1 cut(s)	111
BarI	GAAGNNNNNNTAC	2 cut(s)	52, 84
Bbv12I	GWGCWC	1 cut(s)	111
BcgI	CGANNNNNNTGC	2 cut(s)	239, 273
BciVI	GTATCC	1 cut(s)	189
BclI	TGATCA	1 cut(s)	141
BcnI	CCSGG	1 cut(s)	201
BfuAI	ACCTGC	1 cut(s)	179
BfuI	GTATCC	1 cut(s)	189
Bme1390I	CCNGG	1 cut(s)	201
BmrFI	CCNGG	1 cut(s)	201
BpuMI	CCSGG	1 cut(s)	201
Bse1I	ACTGG	1 cut(s)	51
BseGI	GGATG	1 cut(s)	156
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	1 cut(s)	51
BsiHKAI	GWGCWC	1 cut(s)	111
BsiSI	CCGG	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	136, 141
BspCNI	CTCAG	1 cut(s)	92
BspMI	ACCTGC	1 cut(s)	179
BspPI	GGATC	1 cut(s)	144
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	1 cut(s)	51
BssMI	GATC	2 cut(s)	136, 141
Bst6I	CTCTTC	1 cut(s)	267
BstAUI	TGTACA	1 cut(s)	153
BstC8I	GCNNGC	1 cut(s)	107
BstDEI	CTNAG	1 cut(s)	79
BstF5I	GGATG	1 cut(s)	156
BstKTI	GATC	2 cut(s)	139, 144
BstMBI	GATC	2 cut(s)	136, 141
BstSCI	CCNGG	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
BsuI	GTATCC	1 cut(s)	189
BtsCI	GGATG	1 cut(s)	156
BveI	ACCTGC	1 cut(s)	179
Cac8I	GCNNGC	1 cut(s)	107
Csp6I	GTAC	2 cut(s)	36, 154
CviJI	RGCY	1 cut(s)	109
CviKI_1	RGCY	1 cut(s)	109
CviQI	GTAC	2 cut(s)	36, 154
DdeI	CTNAG	1 cut(s)	79
DpnI	GATC	2 cut(s)	138, 143
DpnII	GATC	2 cut(s)	136, 141
Eam1104I	CTCTTC	1 cut(s)	267
EarI	CTCTTC	1 cut(s)	267
Ecl136II	GAGCTC	1 cut(s)	109
Eco24I	GRGCYC	1 cut(s)	111
Eco53kI	GAGCTC	1 cut(s)	109
EcoICRI	GAGCTC	1 cut(s)	109
EcoT38I	GRGCYC	1 cut(s)	111
FaiI	YATR	5 cut(s)	14, 98, 113, 119, 246
FbaI	TGATCA	1 cut(s)	141
FokI	GGATG	1 cut(s)	163
FriOI	GRGCYC	1 cut(s)	111
HapII	CCGG	1 cut(s)	200
HinfI	GANTC	3 cut(s)	4, 228, 251
HpaII	CCGG	1 cut(s)	200
Hpy166II	GTNNAC	1 cut(s)	125
Hpy188I	TCNGA	4 cut(s)	9, 82, 141, 195
Hpy188III	TCNNGA	1 cut(s)	232
Hpy8I	GTNNAC	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	79
Ksp22I	TGATCA	1 cut(s)	141
Kzo9I	GATC	2 cut(s)	136, 141
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	6 cut(s)	64, 133, 174, 213, 217, 275
MalI	GATC	2 cut(s)	138, 143
MboI	GATC	2 cut(s)	136, 141
MboII	GAAGA	4 cut(s)	14, 95, 227, 284
MflI	RGATCY	1 cut(s)	136
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	1 cut(s)	289
MlyI	GAGTC	2 cut(s)	13, 260
MmeI	TCCRAC	2 cut(s)	145, 173
MseI	TTAA	1 cut(s)	75
MslI	CAYNNNNRTG	1 cut(s)	116
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	1 cut(s)	201
NciI	CCSGG	1 cut(s)	201
NdeII	GATC	2 cut(s)	136, 141
PfeI	GAWTC	1 cut(s)	228
PleI	GAGTC	2 cut(s)	12, 259
PpsI	GAGTC	2 cut(s)	12, 259
Psp124BI	GAGCTC	1 cut(s)	111
PsuI	RGATCY	1 cut(s)	136
RsaI	GTAC	2 cut(s)	37, 155
RsaNI	GTAC	2 cut(s)	36, 154
RseI	CAYNNNNRTG	1 cut(s)	116
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	1 cut(s)	75
Sau3AI	GATC	2 cut(s)	136, 141
SchI	GAGTC	2 cut(s)	13, 260
ScrFI	CCNGG	1 cut(s)	201
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	3 cut(s)	111, 176, 193
SmiMI	CAYNNNNRTG	1 cut(s)	116
Sse9I	AATT	1 cut(s)	289
SstI	GAGCTC	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	199
TasI	AATT	1 cut(s)	289
TatI	WGTACW	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	228
Tru1I	TTAA	1 cut(s)	75
Tru9I	TTAA	1 cut(s)	75

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.