Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

12960847 .. 12962162

Gene Structure 1316 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30420.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGATAATACCAACCGTCTTCGTCTTCGTCGCGGTCCCAGTCTTAGGCAAACTAAGTTCACTCGATCCCGATATGACTCTGAAGAAGTGAGTAGCATCGAATGGGAGTTTATCAGTATGACCGAACAAGAAGAAGATCTCATCTCTCGAATGTACAGACTTGTCGGTAATAGGTGGGATTTAATAGCAGGAAGAGTCGTAGGAAGAAAGGCAAATGAGATTGAGAGATACTGGATTATGAGAAACTCTGACTATTTTTCTCACAAACGACGACGTCTTAATAATTCTCCCTTTTTTTCTACTTCTCCTCTTAATCTCCAAGAAAATCTAAAATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

112

Amino Acids

13.61

Weight (kDa)

10.17

Isoelectric Point (pI)

85.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	40 - 80	5.5e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	277
AccII	CGCG	1 cut(s)	33
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	60
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	274
AfaI	GTAC	1 cut(s)	155
AfiI	CCNNNNNNNGG	1 cut(s)	45
AlwI	GGATC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	35
BbsI	GAAGAC	2 cut(s)	11, 17
BglII	AGATCT	1 cut(s)	136
Bme18I	GGWCC	1 cut(s)	35
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	37
BmrI	ACTGGG	1 cut(s)	33
BmsI	GCATC	1 cut(s)	105
BmuI	ACTGGG	1 cut(s)	33
BpiI	GAAGAC	2 cut(s)	11, 17
BsaHI	GRCGYC	1 cut(s)	274
Bsc4I	CCNNNNNNNGG	1 cut(s)	45
Bse1I	ACTGG	2 cut(s)	39, 236
BseLI	CCNNNNNNNGG	1 cut(s)	45
BseNI	ACTGG	2 cut(s)	39, 236
BseRI	GAGGAG	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	33
BslFI	GGGAC	1 cut(s)	21
BslI	CCNNNNNNNGG	1 cut(s)	45
BsmFI	GGGAC	1 cut(s)	21
Bsp1407I	TGTACA	1 cut(s)	153
Bsp143I	GATC	2 cut(s)	65, 136
BspACI	CCGC	1 cut(s)	33
BspFNI	CGCG	1 cut(s)	33
BspLI	GGNNCC	1 cut(s)	37
BspPI	GGATC	1 cut(s)	60
BsrGI	TGTACA	1 cut(s)	153
BsrI	ACTGG	2 cut(s)	39, 236
BssMI	GATC	2 cut(s)	65, 136
BssNI	GRCGYC	1 cut(s)	274
Bst4CI	ACNGT	1 cut(s)	17
Bst6I	CTCTTC	1 cut(s)	187
BstACI	GRCGYC	1 cut(s)	274
BstAUI	TGTACA	1 cut(s)	153
BstDEI	CTNAG	2 cut(s)	44, 54
BstFNI	CGCG	1 cut(s)	33
BstKTI	GATC	2 cut(s)	68, 139
BstMBI	GATC	2 cut(s)	65, 136
BstUI	CGCG	1 cut(s)	33
BstV2I	GAAGAC	2 cut(s)	11, 17
BstX2I	RGATCY	1 cut(s)	136
BstYI	RGATCY	1 cut(s)	136
Cfr13I	GGNCC	1 cut(s)	35
Csp6I	GTAC	1 cut(s)	154
CviQI	GTAC	1 cut(s)	154
DdeI	CTNAG	2 cut(s)	44, 54
DpnI	GATC	2 cut(s)	67, 138
DpnII	GATC	2 cut(s)	65, 136
Eam1104I	CTCTTC	1 cut(s)	187
EarI	CTCTTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	35
Eco57I	CTGAAG	1 cut(s)	102
FaiI	YATR	3 cut(s)	75, 119, 239
FaqI	GGGAC	1 cut(s)	21
Hin1I	GRCGYC	1 cut(s)	274
HinfI	GANTC	2 cut(s)	77, 195
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	2 cut(s)	82, 250
Hpy188III	TCNNGA	2 cut(s)	69, 147
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	3 cut(s)	33, 273, 276
HpyCH4III	ACNGT	1 cut(s)	17
HpyCH4IV	ACGT	1 cut(s)	274
HpyF3I	CTNAG	2 cut(s)	44, 54
HpySE526I	ACGT	1 cut(s)	274
Hsp92I	GRCGYC	1 cut(s)	274
Kzo9I	GATC	2 cut(s)	65, 136
LpnPI	CCDG	3 cut(s)	52, 174, 217
LweI	GCATC	1 cut(s)	105
MaeII	ACGT	1 cut(s)	274
MalI	GATC	2 cut(s)	67, 138
MboI	GATC	2 cut(s)	65, 136
MboII	GAAGA	7 cut(s)	11, 17, 95, 143, 146, 204, 216
MflI	RGATCY	1 cut(s)	136
MluCI	AATT	2 cut(s)	283, 332
MlyI	GAGTC	2 cut(s)	71, 204
MnlI	CCTC	1 cut(s)	318
MseI	TTAA	3 cut(s)	182, 279, 312
MvnI	CGCG	1 cut(s)	33
NdeII	GATC	2 cut(s)	65, 136
NlaIV	GGNNCC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	273
PleI	GAGTC	2 cut(s)	71, 203
PpsI	GAGTC	2 cut(s)	71, 203
PspN4I	GGNNCC	1 cut(s)	37
PspPI	GGNCC	1 cut(s)	35
PsuI	RGATCY	1 cut(s)	136
PsyI	GACNNNGTC	1 cut(s)	273
RsaI	GTAC	1 cut(s)	155
RsaNI	GTAC	1 cut(s)	154
SaqAI	TTAA	3 cut(s)	182, 279, 312
Sau3AI	GATC	2 cut(s)	65, 136
Sau96I	GGNCC	1 cut(s)	35
SchI	GAGTC	2 cut(s)	71, 204
SetI	ASST	2 cut(s)	176, 277
SfaNI	GCATC	1 cut(s)	105
SinI	GGWCC	1 cut(s)	35
Sse9I	AATT	2 cut(s)	283, 332
SsiI	CCGC	1 cut(s)	33
TaaI	ACNGT	1 cut(s)	17
TaiI	ACGT	1 cut(s)	277
TaqI	TCGA	3 cut(s)	64, 99, 148
TaqII	GACCGA	1 cut(s)	137
TasI	AATT	2 cut(s)	283, 332
TatI	WGTACW	1 cut(s)	153
Tru1I	TTAA	3 cut(s)	182, 279, 312
Tru9I	TTAA	3 cut(s)	182, 279, 312
Tth111I	GACNNNGTC	1 cut(s)	273
VpaK11BI	GGWCC	1 cut(s)	35
ZraI	GACGTC	1 cut(s)	275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.