Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

12968565 .. 12970240

Gene Structure 1676 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30432.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 255 bp

ATGGATAACACAAACCGTCTTCGCCGCCTTCACTGTCATAAACAACCCAAGTTCACTCATAGCTCTCAAGAAGTGAGTAGTATGAAATGGGAGTTTATCAATATGACCGAACAAGAAGAAGATCTCATCTTTAGAATGTACAGACTTGTTGGCGACAGGTGGGATTTAATAGCAAGAAGAGTGGTGGGACGTGAGGCAAAGGAGATAGAGAGATACTGGATTATGAGAAATTGTGACTATTTCTCCCACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010061 GO:0010063 GO:0010090 GO:0010091 GO:0010103 GO:0010374 GO:0010376 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0010769 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042659 GO:0042660 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0046677 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0060284 GO:0060429 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1903888 GO:1903890 GO:1905421 GO:1905423 GO:2000024 GO:2000026 GO:2000039 GO:2000067 GO:2000112 GO:2000280 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

84

Amino Acids

10.49

Weight (kDa)

9.1

Isoelectric Point (pI)

72.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	35 - 75	1.3e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	25
AfaI	GTAC	1 cut(s)	140
AjiI	CACGTC	1 cut(s)	191
AluBI	AGCT	1 cut(s)	63
AluI	AGCT	1 cut(s)	63
BbsI	GAAGAC	1 cut(s)	11
BglII	AGATCT	1 cut(s)	121
BisI	GCNGC	1 cut(s)	25
BlsI	GCNGC	1 cut(s)	26
BmgBI	CACGTC	1 cut(s)	191
BpiI	GAAGAC	1 cut(s)	11
BpuEI	CTTGAG	1 cut(s)	51
BsaXI	ACNNNNNCTCC	1 cut(s)	227
Bse1I	ACTGG	1 cut(s)	221
BseNI	ACTGG	1 cut(s)	221
BslFI	GGGAC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	201
Bsp1407I	TGTACA	1 cut(s)	138
Bsp143I	GATC	1 cut(s)	121
BspACI	CCGC	1 cut(s)	25
BsrGI	TGTACA	1 cut(s)	138
BsrI	ACTGG	1 cut(s)	221
BssMI	GATC	1 cut(s)	121
Bst4CI	ACNGT	2 cut(s)	17, 35
Bst6I	CTCTTC	1 cut(s)	172
BstAUI	TGTACA	1 cut(s)	138
BstKTI	GATC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	121
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	121
BtrI	CACGTC	1 cut(s)	191
BtsIMutI	CAGTG	1 cut(s)	31
Csp6I	GTAC	1 cut(s)	139
CspCI	CAANNNNNGTGG	2 cut(s)	162, 197
CviJI	RGCY	1 cut(s)	63
CviKI_1	RGCY	1 cut(s)	63
CviQI	GTAC	1 cut(s)	139
DpnI	GATC	1 cut(s)	123
DpnII	GATC	1 cut(s)	121
Eam1104I	CTCTTC	1 cut(s)	172
EarI	CTCTTC	1 cut(s)	172
FaiI	YATR	5 cut(s)	39, 60, 83, 104, 224
FaqI	GGGAC	1 cut(s)	201
Fnu4HI	GCNGC	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	25
GluI	GCNGC	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	54
Hpy188III	TCNNGA	1 cut(s)	68
Hpy8I	GTNNAC	1 cut(s)	54
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	2 cut(s)	17, 35
HpyCH4IV	ACGT	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	190
Kzo9I	GATC	1 cut(s)	121
LpnPI	CCDG	2 cut(s)	142, 202
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	1 cut(s)	233
MalI	GATC	1 cut(s)	123
MboI	GATC	1 cut(s)	121
MboII	GAAGA	4 cut(s)	11, 128, 131, 189
MflI	RGATCY	1 cut(s)	121
MluCI	AATT	1 cut(s)	229
MnlI	CCTC	1 cut(s)	187
MseI	TTAA	1 cut(s)	167
NdeII	GATC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	233
PkrI	GCNGC	1 cut(s)	26
PsuI	RGATCY	1 cut(s)	121
RsaI	GTAC	1 cut(s)	140
RsaNI	GTAC	1 cut(s)	139
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	1 cut(s)	25
Sau3AI	GATC	1 cut(s)	121
SetI	ASST	3 cut(s)	65, 161, 193
SgeI	CNNG	8 cut(s)	61, 80, 125, 158, 169, 186, 203, 229
SmlI	CTYRAG	1 cut(s)	66
SmoI	CTYRAG	1 cut(s)	66
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	1 cut(s)	25
TaaI	ACNGT	2 cut(s)	17, 35
TaiI	ACGT	1 cut(s)	193
TaqII	GACCGA	1 cut(s)	122
TasI	AATT	1 cut(s)	229
TatI	WGTACW	1 cut(s)	138
TauI	GCSGC	1 cut(s)	27
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TscAI	CASTG	1 cut(s)	38
TseFI	GTSAC	1 cut(s)	233
Tsp45I	GTSAC	1 cut(s)	233
TspDTI	ATGAA	1 cut(s)	98
TspRI	CASTG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.