Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

12962984 .. 12965723

Gene Structure 2740 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G30424.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGATAACACCAACCGTCTTCGTCACCTTCGCAGTCGTAAGCAATCCAAGTTCACTCTAGGGGATACCGCAGAGGTAAATAGTGTGAAATGGGAGTTTATCAATATGACGGAACAAGAAGAAGATCTCATCTTTCGAATGCACAGACTTGTTGGTGATAGGTGGGATTTAATAGCAGGAAGAGTGGTAGGACGAGAGGCAAAGGACATAGAAAGATATTGGATTATGAGAAACTGTGATCATTGTTCCCACAAACGACGCCGAGTCCACAAATTTTACCGTTTCTCTATTTCTCCTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0010769 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

100

Amino Acids

12.22

Weight (kDa)

10.01

Isoelectric Point (pI)

76.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	36 - 76	1.6e-08	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	69
AcsI	RAATTY	1 cut(s)	272
AcyI	GRCGYC	1 cut(s)	259
AhdI	GACNNNNNGTC	1 cut(s)	263
ApoI	RAATTY	1 cut(s)	272
AsuHPI	GGTGA	2 cut(s)	17, 167
AsuII	TTCGAA	1 cut(s)	136
BbsI	GAAGAC	1 cut(s)	11
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	238
BfaI	CTAG	1 cut(s)	59
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	1 cut(s)	124
BmeRI	GACNNNNNGTC	1 cut(s)	263
BpiI	GAAGAC	1 cut(s)	11
Bpu14I	TTCGAA	1 cut(s)	136
BsaHI	GRCGYC	1 cut(s)	259
BseRI	GAGGAG	1 cut(s)	285
BsmI	GAATGC	1 cut(s)	144
Bsp119I	TTCGAA	1 cut(s)	136
Bsp143I	GATC	2 cut(s)	124, 238
BspACI	CCGC	1 cut(s)	69
BspT104I	TTCGAA	1 cut(s)	136
BssMI	GATC	2 cut(s)	124, 238
BssNI	GRCGYC	1 cut(s)	259
Bst4CI	ACNGT	3 cut(s)	17, 236, 281
Bst6I	CTCTTC	1 cut(s)	175
BstACI	GRCGYC	1 cut(s)	259
BstBI	TTCGAA	1 cut(s)	136
BstKTI	GATC	2 cut(s)	127, 241
BstMBI	GATC	2 cut(s)	124, 238
BstV2I	GAAGAC	1 cut(s)	11
BstX2I	RGATCY	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	124
BsuI	GTATCC	1 cut(s)	58
CseI	GACGC	1 cut(s)	267
DpnI	GATC	2 cut(s)	126, 240
DpnII	GATC	2 cut(s)	124, 238
DriI	GACNNNNNGTC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	175
Eam1105I	GACNNNNNGTC	1 cut(s)	263
EarI	CTCTTC	1 cut(s)	175
FaiI	YATR	3 cut(s)	107, 209, 227
FbaI	TGATCA	1 cut(s)	238
FspBI	CTAG	1 cut(s)	59
HgaI	GACGC	1 cut(s)	267
Hin1I	GRCGYC	1 cut(s)	259
HinfI	GANTC	1 cut(s)	264
HphI	GGTGA	2 cut(s)	17, 167
Hpy166II	GTNNAC	2 cut(s)	54, 268
Hpy8I	GTNNAC	2 cut(s)	54, 268
Hpy99I	CGWCG	1 cut(s)	261
HpyAV	CCTTC	1 cut(s)	38
HpyCH4III	ACNGT	3 cut(s)	17, 236, 281
HpyCH4V	TGCA	1 cut(s)	142
Hsp92I	GRCGYC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	124, 238
LpnPI	CCDG	1 cut(s)	162
MaeI	CTAG	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	23
MalI	GATC	2 cut(s)	126, 240
MboI	GATC	2 cut(s)	124, 238
MboII	GAAGA	4 cut(s)	11, 131, 134, 192
MflI	RGATCY	1 cut(s)	124
MluCI	AATT	1 cut(s)	272
MlyI	GAGTC	1 cut(s)	273
MnlI	CCTC	2 cut(s)	67, 190
MseI	TTAA	2 cut(s)	170, 301
Mva1269I	GAATGC	1 cut(s)	144
NdeII	GATC	2 cut(s)	124, 238
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	23
NspV	TTCGAA	1 cut(s)	136
PctI	GAATGC	1 cut(s)	144
PleI	GAGTC	1 cut(s)	272
PpsI	GAGTC	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	124
SaqAI	TTAA	2 cut(s)	170, 301
Sau3AI	GATC	2 cut(s)	124, 238
SchI	GAGTC	1 cut(s)	273
SetI	ASST	3 cut(s)	30, 78, 164
SfuI	TTCGAA	1 cut(s)	136
SgeI	CNNG	7 cut(s)	61, 71, 128, 161, 189, 206, 275
Sse9I	AATT	1 cut(s)	272
SsiI	CCGC	1 cut(s)	69
SspMI	CTAG	1 cut(s)	59
TaaI	ACNGT	3 cut(s)	17, 236, 281
TaqI	TCGA	1 cut(s)	136
TasI	AATT	1 cut(s)	272
Tru1I	TTAA	2 cut(s)	170, 301
Tru9I	TTAA	2 cut(s)	170, 301
TseFI	GTSAC	1 cut(s)	23
Tsp45I	GTSAC	1 cut(s)	23
TspGWI	ACGGA	1 cut(s)	125
XapI	RAATTY	1 cut(s)	272
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.