AT5G53200
MYB Family

transcription regulator recruiting activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0004016
Physical Location & Seq
Forward (+)
21582614 .. 21584243
1630 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G53200.1

Sequence Viewer

Length: 321 bp
ATGGATAACACTGACCGTCGTCGCCGTCGTAAGCAACACAAAATCGCCCTCCATGACTCTGAAGAAGTGAGCAGTATCGAATGGGAGTTTATCAACATGACTGAACAAGAAGAAGATCTCATCTTTCGAATGTACAGACTTGTCGGTGATAGGTGGGATTTGATAGCAGGAAGAGTTCCTGGAAGACAACCAGAGGAGATAGAGAGATATTGGATAATGAGAAACAGTGAAGGCTTTGCTGATAAACGACGCCAGCTTCACTCATCTTCCCACAAACATACCAAGCCTCACCGTCCTCGCTTTTCTATCTATCCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0007275 GO:0008150 GO:0008544 GO:0009653 GO:0009719 GO:0009725 GO:0009751 GO:0009753 GO:0009791 GO:0009888 GO:0009889 GO:0009913 GO:0009987 GO:0010016 GO:0010026 GO:0010033 GO:0010061 GO:0010063 GO:0010090 GO:0010091 GO:0010103 GO:0010374 GO:0010376 GO:0010453 GO:0010455 GO:0010468 GO:0010556 GO:0010769 GO:0014070 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0030855 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032989 GO:0042221 GO:0042493 GO:0042659 GO:0042660 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0045597 GO:0046677 GO:0048367 GO:0048468 GO:0048518 GO:0048522 GO:0048646 GO:0048731 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051094 GO:0051128 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0060284 GO:0060429 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0090698 GO:0097159 GO:0140110 GO:1901363 GO:1901700 GO:1903506 GO:1903888 GO:1903890 GO:1905421 GO:1905423 GO:2000024 GO:2000026 GO:2000039 GO:2000067 GO:2000112 GO:2000280 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

106

Amino Acids

13.01

Weight (kDa)

9.51

Isoelectric Point (pI)

93.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 33 - 73 6.8e-09 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 81
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 1 cut(s) 134
AjnI CCWGG 1 cut(s) 178
AluBI AGCT 1 cut(s) 256
AluI AGCT 1 cut(s) 256
AsuHPI GGTGA 2 cut(s) 158, 281
AsuII TTCGAA 1 cut(s) 127
BbsI GAAGAC 1 cut(s) 190
BceAI ACGGC 1 cut(s) 9
BciT130I CCWGG 1 cut(s) 180
BfaI CTAG 1 cut(s) 319
BglII AGATCT 1 cut(s) 115
Bme1390I CCNGG 1 cut(s) 180
BmrFI CCNGG 1 cut(s) 180
BoxI GACNNNNGTC 1 cut(s) 18
BpiI GAAGAC 1 cut(s) 190
Bpu14I TTCGAA 1 cut(s) 127
BsaHI GRCGYC 1 cut(s) 250
BseBI CCWGG 1 cut(s) 180
BseRI GAGGAG 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 1 cut(s) 115
BspT104I TTCGAA 1 cut(s) 127
BsrGI TGTACA 1 cut(s) 132
BssMI GATC 1 cut(s) 115
BssNI GRCGYC 1 cut(s) 250
Bst2UI CCWGG 1 cut(s) 180
Bst4CI ACNGT 3 cut(s) 17, 227, 293
Bst6I CTCTTC 1 cut(s) 166
BstACI GRCGYC 1 cut(s) 250
BstAUI TGTACA 1 cut(s) 132
BstBI TTCGAA 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 254
BstKTI GATC 1 cut(s) 118
BstMBI GATC 1 cut(s) 115
BstNI CCWGG 1 cut(s) 180
BstPAI GACNNNNGTC 1 cut(s) 18
BstSCI CCNGG 1 cut(s) 178
BstV2I GAAGAC 1 cut(s) 190
BstX2I RGATCY 1 cut(s) 115
BstYI RGATCY 1 cut(s) 115
BtsIMutI CAGTG 2 cut(s) 9, 232
Cac8I GCNNGC 1 cut(s) 254
CseI GACGC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 133
CviAII CATG 2 cut(s) 53, 97
CviJI RGCY 3 cut(s) 234, 256, 286
CviKI_1 RGCY 3 cut(s) 234, 256, 286
CviQI GTAC 1 cut(s) 133
DpnI GATC 1 cut(s) 117
DpnII GATC 1 cut(s) 115
Eam1104I CTCTTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 81
EcoRII CCWGG 1 cut(s) 178
FaeI CATG 2 cut(s) 56, 100
FaiI YATR 3 cut(s) 54, 98, 279
FatI CATG 2 cut(s) 52, 96
FspBI CTAG 1 cut(s) 319
HgaI GACGC 1 cut(s) 258
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 2 cut(s) 56, 100
HinfI GANTC 1 cut(s) 56
HphI GGTGA 2 cut(s) 158, 281
Hpy188I TCNGA 1 cut(s) 61
Hpy99I CGWCG 4 cut(s) 21, 24, 30, 252
HpyAV CCTTC 1 cut(s) 224
HpyCH4III ACNGT 3 cut(s) 17, 227, 293
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 2 cut(s) 56, 100
Kzo9I GATC 1 cut(s) 115
LpnPI CCDG 5 cut(s) 153, 165, 192, 204, 266
MaeI CTAG 1 cut(s) 319
MalI GATC 1 cut(s) 117
MboI GATC 1 cut(s) 115
MboII GAAGA 6 cut(s) 74, 122, 125, 183, 195, 258
MflI RGATCY 1 cut(s) 115
MlyI GAGTC 1 cut(s) 50
MnlI CCTC 4 cut(s) 59, 187, 297, 306
MspR9I CCNGG 1 cut(s) 180
MvaI CCWGG 1 cut(s) 180
NdeII GATC 1 cut(s) 115
NlaIII CATG 2 cut(s) 56, 100
NspV TTCGAA 1 cut(s) 127
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PfoI TCCNGGA 1 cut(s) 178
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
PshAI GACNNNNGTC 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 178
PspGI CCWGG 1 cut(s) 178
PsuI RGATCY 1 cut(s) 115
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 115
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 180
SetI ASST 2 cut(s) 155, 258
SfuI TTCGAA 1 cut(s) 127
SspMI CTAG 1 cut(s) 319
StyD4I CCNGG 1 cut(s) 178
TaaI ACNGT 3 cut(s) 17, 227, 293
TaqI TCGA 2 cut(s) 78, 127
TatI WGTACW 1 cut(s) 132
TscAI CASTG 2 cut(s) 16, 232
TspRI CASTG 2 cut(s) 16, 232
XspI CTAG 1 cut(s) 319
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.