Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0004016

Physical Location & Seq

Genomic Coordinates Reverse (-)

2578248 .. 2579430

Gene Structure 1183 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g04380.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGAGTCAGAATATGGATAATCTTCTACAAAATACTGAAAATAGTACCATTTCCATTTCTAGTACTACTAGTGCTACTGCTTCCAGCAACTCAGAAGAAGTAAGCAGTATGGAGCGGAAGCTCGTAAAGATGAGTGAACAAGAGAAAGATCTGATCAACAGGATGCACAGACTGGTTGGAGATAGCAGGTGGGATTTGATAGCCGGGCGGATTCCAGATCGTAAAGCAGAAGACATAGAGAGATTCTGGATACTAACACATACTGAGCCGTTTTCCGGCCAGAAGAAAGAACAGAAAGAAGCAATGAACGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0009653 GO:0009888 GO:0009889 GO:0009987 GO:0010026 GO:0010090 GO:0010091 GO:0010468 GO:0010556 GO:0010769 GO:0016043 GO:0019219 GO:0019222 GO:0022603 GO:0022604 GO:0030154 GO:0031323 GO:0031326 GO:0032502 GO:0032989 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045595 GO:0048468 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051128 GO:0051171 GO:0051239 GO:0051252 GO:0060255 GO:0060284 GO:0065007 GO:0071840 GO:0080090 GO:0090558 GO:0090626 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000024 GO:2000026 GO:2000039 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

105

Amino Acids

11.87

Weight (kDa)

5.38

Isoelectric Point (pI)

67.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	43 - 83	2.2e-06	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G30420 AT2G30424 AT2G30424 AT2G30424 AT2G30432 AT5G53200
fragaria_vesca	FvH4_5g04380 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070 FvH4_7g31070
malus_domestica	MD01G1215600.v1.1 MD06G1104200.v1.1 MD07G1285700.v1.1
prunus_persica	Prupe.2G307600_v2.0.a1
pyrus_communis	pycom06g09900
rosa_chinensis	RchiOBHm_Chr1g0380141 RchiOBHm_Chr7g0195181
rosa_laevigata	RLG00000026327
rosa_multiflora	Rmu_sc0001232.1_g000017 Rmu_sc0002381.1_g000016
rosa_roxburghii	Rroxscaffold_3G00260690 Rroxscaffold_4G00279640
rosa_rugosa	Rorug01G0418000 Rorug01G0418100
rosa_samantha	Rh1AG443100 Rh1BG398000 Rh1CG411500 Rh1DG428800 Rh7BG149900 Rh7CG153400
rosa_wichuraiana	Rw1G038470 Rw7G012700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	177
Acc36I	ACCTGC	1 cut(s)	177
AccBSI	CCGCTC	1 cut(s)	115
AciI	CCGC	2 cut(s)	115, 208
AcoI	YGGCCR	1 cut(s)	277
AfaI	GTAC	2 cut(s)	46, 64
AfiI	CCNNNNNNNGG	1 cut(s)	275
AhlI	ACTAGT	1 cut(s)	68
AluBI	AGCT	1 cut(s)	121
AluI	AGCT	1 cut(s)	121
AoxI	GGCC	1 cut(s)	277
AsuC2I	CCSGG	1 cut(s)	205
BbsI	GAAGAC	1 cut(s)	237
BceAI	ACGGC	1 cut(s)	253
BciVI	GTATCC	1 cut(s)	243
BclI	TGATCA	1 cut(s)	153
BcnI	CCSGG	1 cut(s)	205
BcuI	ACTAGT	1 cut(s)	68
BfaI	CTAG	2 cut(s)	60, 69
BfuAI	ACCTGC	1 cut(s)	177
BfuI	GTATCC	1 cut(s)	243
BglII	AGATCT	1 cut(s)	148
BmcAI	AGTACT	1 cut(s)	64
Bme1390I	CCNGG	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	237
BpuMI	CCSGG	1 cut(s)	205
Bsc4I	CCNNNNNNNGG	1 cut(s)	275
Bse1I	ACTGG	1 cut(s)	177
Bse3DI	GCAATG	1 cut(s)	309
BseGI	GGATG	1 cut(s)	168
BseLI	CCNNNNNNNGG	1 cut(s)	275
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	105, 255
BseNI	ACTGG	1 cut(s)	177
BshFI	GGCC	1 cut(s)	279
BsiSI	CCGG	2 cut(s)	204, 276
BslI	CCNNNNNNNGG	1 cut(s)	275
BsnI	GGCC	1 cut(s)	279
Bsp143I	GATC	3 cut(s)	148, 153, 217
BspACI	CCGC	2 cut(s)	115, 208
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	2 cut(s)	104, 256
BspMI	ACCTGC	1 cut(s)	177
BsrBI	CCGCTC	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	1 cut(s)	177
BssMI	GATC	3 cut(s)	148, 153, 217
BstDEI	CTNAG	2 cut(s)	91, 264
BstF5I	GGATG	1 cut(s)	168
BstKTI	GATC	3 cut(s)	151, 156, 220
BstMBI	GATC	3 cut(s)	148, 153, 217
BstSCI	CCNGG	1 cut(s)	203
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	148
BstYI	RGATCY	1 cut(s)	148
BsuI	GTATCC	1 cut(s)	243
BsuRI	GGCC	1 cut(s)	279
BtsCI	GGATG	1 cut(s)	168
BveI	ACCTGC	1 cut(s)	177
Csp6I	GTAC	2 cut(s)	45, 63
CviJI	RGCY	4 cut(s)	121, 203, 268, 279
CviKI_1	RGCY	4 cut(s)	121, 203, 268, 279
CviQI	GTAC	2 cut(s)	45, 63
DdeI	CTNAG	2 cut(s)	91, 264
DpnI	GATC	3 cut(s)	150, 155, 219
DpnII	GATC	3 cut(s)	148, 153, 217
EaeI	YGGCCR	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	223
FaiI	YATR	4 cut(s)	14, 110, 236, 261
FbaI	TGATCA	1 cut(s)	153
FokI	GGATG	1 cut(s)	175
FspBI	CTAG	2 cut(s)	60, 69
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	204, 276
HinfI	GANTC	3 cut(s)	4, 211, 243
HpaII	CCGG	2 cut(s)	204, 276
Hpy166II	GTNNAC	1 cut(s)	137
Hpy188I	TCNGA	3 cut(s)	9, 94, 153
Hpy188III	TCNNGA	2 cut(s)	215, 247
Hpy8I	GTNNAC	1 cut(s)	137
HpyCH4V	TGCA	1 cut(s)	166
HpyF3I	CTNAG	2 cut(s)	91, 264
Ksp22I	TGATCA	1 cut(s)	153
Kzo9I	GATC	3 cut(s)	148, 153, 217
LmnI	GCTCC	1 cut(s)	112
LpnPI	CCDG	9 cut(s)	97, 145, 158, 172, 217, 228, 232, 289, 293
LweI	GCATC	1 cut(s)	153
MaeI	CTAG	2 cut(s)	60, 69
MalI	GATC	3 cut(s)	150, 155, 219
MbiI	CCGCTC	1 cut(s)	115
MboI	GATC	3 cut(s)	148, 153, 217
MboII	GAAGA	4 cut(s)	14, 107, 242, 295
MflI	RGATCY	1 cut(s)	148
MlyI	GAGTC	1 cut(s)	13
MmeI	TCCRAC	1 cut(s)	157
MspI	CCGG	2 cut(s)	204, 276
MspR9I	CCNGG	1 cut(s)	205
NciI	CCSGG	1 cut(s)	205
NdeII	GATC	3 cut(s)	148, 153, 217
PaqCI	CACCTGC	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	211, 243
PleI	GAGTC	1 cut(s)	12
PpsI	GAGTC	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	148
RsaI	GTAC	2 cut(s)	46, 64
RsaNI	GTAC	2 cut(s)	45, 63
Sau3AI	GATC	3 cut(s)	148, 153, 217
ScaI	AGTACT	1 cut(s)	64
SchI	GAGTC	1 cut(s)	13
ScrFI	CCNGG	1 cut(s)	205
SetI	ASST	2 cut(s)	123, 191
SfaNI	GCATC	1 cut(s)	153
SpeI	ACTAGT	1 cut(s)	68
SsiI	CCGC	2 cut(s)	115, 208
SspMI	CTAG	2 cut(s)	60, 69
StyD4I	CCNGG	1 cut(s)	203
TatI	WGTACW	1 cut(s)	62
TfiI	GAWTC	2 cut(s)	211, 243
XspI	CTAG	2 cut(s)	60, 69
ZrmI	AGTACT	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.