RNA polymerase sigma factor sigE, chloroplastic
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G24120 AT5G24120 AT5G24120 |
| fragaria_vesca | FvH4_7g31060 FvH4_7g31060 |
| malus_domestica | MD07G1285600.v1.1 |
| prunus_persica | Prupe.2G307500_v2.0.a1 Prupe.2G307500_v2.0.a1 |
| pyrus_communis | pycom07g25910 |
| rosa_chinensis | RchiOBHm_Chr1g0380131 |
| rosa_laevigata | RLG00000026328 |
| rosa_multiflora | Rmu_sc0001232.1_g000016 |
| rosa_roxburghii | Rroxscaffold_4G00279650 |
| rosa_rugosa | Rorug01G0417700 Rorug01G0417800 Rorug01G0417900 Rorug01G0418000 Rorug01G0418000 |
| rosa_samantha | Rh1AG443000 Rh1BG397900 Rh1CG411400 Rh1DG428700 |
| rosa_wichuraiana | Rw1G038460 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1280 |
| Acc36I | ACCTGC | 1 cut(s) | 1339 |
| Acc65I | GGTACC | 1 cut(s) | 1203 |
| AccB1I | GGYRCC | 1 cut(s) | 1203 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 770 |
| AciI | CCGC | 3 cut(s) | 132, 291, 1106 |
| AclI | AACGTT | 1 cut(s) | 1436 |
| AclWI | GGATC | 1 cut(s) | 1037 |
| AcsI | RAATTY | 3 cut(s) | 736, 926, 1188 |
| AcuI | CTGAAG | 3 cut(s) | 354, 1394, 1535 |
| AcyI | GRCGYC | 1 cut(s) | 1223 |
| AfaI | GTAC | 2 cut(s) | 265, 1205 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1200 |
| AjnI | CCWGG | 2 cut(s) | 147, 942 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 806, 838 |
| Alw21I | GWGCWC | 1 cut(s) | 56 |
| Alw26I | GTCTC | 3 cut(s) | 190, 323, 1084 |
| AlwI | GGATC | 1 cut(s) | 1037 |
| Ama87I | CYCGRG | 2 cut(s) | 326, 1527 |
| AoxI | GGCC | 2 cut(s) | 919, 1087 |
| ApeKI | GCWGC | 2 cut(s) | 293, 839 |
| ApoI | RAATTY | 3 cut(s) | 736, 926, 1188 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1479 |
| Asp718I | GGTACC | 1 cut(s) | 1203 |
| AspLEI | GCGC | 1 cut(s) | 1144 |
| AspS9I | GGNCC | 1 cut(s) | 920 |
| AsuHPI | GGTGA | 3 cut(s) | 785, 1325, 1405 |
| AsuII | TTCGAA | 2 cut(s) | 547, 1483 |
| AvaI | CYCGRG | 2 cut(s) | 326, 1527 |
| BanI | GGYRCC | 1 cut(s) | 1203 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1524, 1556 |
| BauI | CACGAG | 2 cut(s) | 1074, 1470 |
| BbsI | GAAGAC | 2 cut(s) | 404, 710 |
| Bbv12I | GWGCWC | 1 cut(s) | 56 |
| BbvCI | CCTCAGC | 1 cut(s) | 783 |
| BbvI | GCAGC | 2 cut(s) | 280, 826 |
| BccI | CCATC | 4 cut(s) | 356, 1049, 1295, 1412 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1508, 1542 |
| BciT130I | CCWGG | 2 cut(s) | 149, 944 |
| BclI | TGATCA | 1 cut(s) | 1395 |
| BcoDI | GTCTC | 3 cut(s) | 190, 323, 1084 |
| BfaI | CTAG | 3 cut(s) | 21, 200, 210 |
| BfmI | CTRYAG | 2 cut(s) | 168, 243 |
| BfuAI | ACCTGC | 1 cut(s) | 1339 |
| BglII | AGATCT | 1 cut(s) | 74 |
| BisI | GCNGC | 3 cut(s) | 291, 294, 840 |
| BlpI | GCTNAGC | 2 cut(s) | 25, 1122 |
| BlsI | GCNGC | 3 cut(s) | 292, 295, 841 |
| Bme1390I | CCNGG | 2 cut(s) | 149, 944 |
| BmeT110I | CYCGRG | 2 cut(s) | 326, 1527 |
| BmgT120I | GGNCC | 1 cut(s) | 920 |
| BmiI | GGNNCC | 1 cut(s) | 1205 |
| BmrFI | CCNGG | 2 cut(s) | 149, 944 |
| BmsI | GCATC | 2 cut(s) | 403, 1528 |
| BpiI | GAAGAC | 2 cut(s) | 404, 710 |
| BpmI | CTGGAG | 1 cut(s) | 642 |
| Bpu10I | CCTNAGC | 1 cut(s) | 783 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 25, 1122 |
| Bpu14I | TTCGAA | 2 cut(s) | 547, 1483 |
| BpuEI | CTTGAG | 1 cut(s) | 1048 |
| BsaAI | YACGTR | 1 cut(s) | 1552 |
| BsaHI | GRCGYC | 1 cut(s) | 1223 |
| BsaJI | CCNNGG | 3 cut(s) | 135, 147, 267 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1200 |
| Bse118I | RCCGGY | 1 cut(s) | 1320 |
| Bse1I | ACTGG | 4 cut(s) | 222, 306, 641, 659 |
| Bse3DI | GCAATG | 1 cut(s) | 161 |
| BseBI | CCWGG | 2 cut(s) | 149, 944 |
| BseDI | CCNNGG | 3 cut(s) | 135, 147, 267 |
| BseGI | GGATG | 4 cut(s) | 526, 668, 1137, 1519 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1200 |
| BseMI | GCAATG | 1 cut(s) | 161 |
| BseMII | CTCAG | 5 cut(s) | 39, 687, 774, 1188, 1354 |
| BseNI | ACTGG | 4 cut(s) | 222, 306, 641, 659 |
| BseRI | GAGGAG | 2 cut(s) | 602, 1286 |
| BseXI | GCAGC | 2 cut(s) | 280, 826 |
| BsgI | GTGCAG | 1 cut(s) | 825 |
| BshFI | GGCC | 2 cut(s) | 921, 1089 |
| BshNI | GGYRCC | 1 cut(s) | 1203 |
| BsiHKAI | GWGCWC | 1 cut(s) | 56 |
| BsiHKCI | CYCGRG | 2 cut(s) | 326, 1527 |
| BsiSI | CCGG | 2 cut(s) | 1003, 1321 |
| BslFI | GGGAC | 1 cut(s) | 972 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 713, 770, 943, 1200 |
| BsmAI | GTCTC | 3 cut(s) | 190, 323, 1084 |
| BsmFI | GGGAC | 1 cut(s) | 972 |
| BsmI | GAATGC | 1 cut(s) | 1158 |
| BsnI | GGCC | 2 cut(s) | 921, 1089 |
| BsoBI | CYCGRG | 2 cut(s) | 326, 1527 |
| Bsp119I | TTCGAA | 2 cut(s) | 547, 1483 |
| Bsp1286I | GDGCHC | 1 cut(s) | 56 |
| Bsp143I | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 25, 1122 |
| BspACI | CCGC | 3 cut(s) | 132, 291, 1106 |
| BspANI | GGCC | 2 cut(s) | 921, 1089 |
| BspCNI | CTCAG | 5 cut(s) | 38, 686, 775, 1189, 1353 |
| BspHI | TCATGA | 2 cut(s) | 888, 1506 |
| BspLI | GGNNCC | 1 cut(s) | 1205 |
| BspMI | ACCTGC | 1 cut(s) | 1339 |
| BspPI | GGATC | 1 cut(s) | 1037 |
| BspQI | GCTCTTC | 1 cut(s) | 1341 |
| BspT104I | TTCGAA | 2 cut(s) | 547, 1483 |
| BspT107I | GGYRCC | 1 cut(s) | 1203 |
| BsrDI | GCAATG | 1 cut(s) | 161 |
| BsrFI | RCCGGY | 1 cut(s) | 1320 |
| BsrI | ACTGG | 4 cut(s) | 222, 306, 641, 659 |
| BssAI | RCCGGY | 1 cut(s) | 1320 |
| BssECI | CCNNGG | 3 cut(s) | 135, 147, 267 |
| BssMI | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| BssNI | GRCGYC | 1 cut(s) | 1223 |
| BssSI | CACGAG | 2 cut(s) | 1074, 1470 |
| BssT1I | CCWWGG | 2 cut(s) | 135, 267 |
| Bst2BI | CACGAG | 2 cut(s) | 1074, 1470 |
| Bst2UI | CCWGG | 2 cut(s) | 149, 944 |
| Bst4CI | ACNGT | 2 cut(s) | 16, 448 |
| Bst6I | CTCTTC | 3 cut(s) | 370, 1248, 1341 |
| BstACI | GRCGYC | 1 cut(s) | 1223 |
| BstBAI | YACGTR | 1 cut(s) | 1552 |
| BstBI | TTCGAA | 2 cut(s) | 547, 1483 |
| BstC8I | GCNNGC | 4 cut(s) | 681, 851, 1038, 1347 |
| BstDEI | CTNAG | 6 cut(s) | 25, 673, 783, 1122, 1197, 1340 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 941 |
| BstF5I | GGATG | 4 cut(s) | 526, 668, 1137, 1519 |
| BstHHI | GCGC | 1 cut(s) | 1144 |
| BstKTI | GATC | 5 cut(s) | 77, 622, 979, 1032, 1398 |
| BstMAI | GTCTC | 3 cut(s) | 190, 323, 1084 |
| BstMBI | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 140, 859 |
| BstNI | CCWGG | 2 cut(s) | 149, 944 |
| BstNSI | RCATGY | 1 cut(s) | 683 |
| BstSCI | CCNGG | 2 cut(s) | 147, 942 |
| BstSFI | CTRYAG | 2 cut(s) | 168, 243 |
| BstSNI | TACGTA | 1 cut(s) | 1552 |
| BstV1I | GCAGC | 2 cut(s) | 280, 826 |
| BstV2I | GAAGAC | 2 cut(s) | 404, 710 |
| BstX2I | RGATCY | 1 cut(s) | 74 |
| BstYI | RGATCY | 1 cut(s) | 74 |
| BsuRI | GGCC | 2 cut(s) | 921, 1089 |
| BtsCI | GGATG | 4 cut(s) | 526, 668, 1137, 1519 |
| BtsIMutI | CAGTG | 3 cut(s) | 21, 444, 1370 |
| BveI | ACCTGC | 1 cut(s) | 1339 |
| Cac8I | GCNNGC | 4 cut(s) | 681, 851, 1038, 1347 |
| CciI | TCATGA | 2 cut(s) | 888, 1506 |
| CfoI | GCGC | 1 cut(s) | 1144 |
| Cfr10I | RCCGGY | 1 cut(s) | 1320 |
| Cfr13I | GGNCC | 1 cut(s) | 920 |
| CseI | GACGC | 1 cut(s) | 1212 |
| Csp6I | GTAC | 2 cut(s) | 264, 1204 |
| CviAII | CATG | 6 cut(s) | 680, 889, 1054, 1208, 1490, 1507 |
| CviQI | GTAC | 2 cut(s) | 264, 1204 |
| DdeI | CTNAG | 6 cut(s) | 25, 673, 783, 1122, 1197, 1340 |
| DpnI | GATC | 5 cut(s) | 76, 621, 978, 1031, 1397 |
| DpnII | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| DraI | TTTAAA | 1 cut(s) | 109 |
| Eam1104I | CTCTTC | 3 cut(s) | 370, 1248, 1341 |
| EarI | CTCTTC | 3 cut(s) | 370, 1248, 1341 |
| EciI | GGCGGA | 1 cut(s) | 1121 |
| Eco105I | TACGTA | 1 cut(s) | 1552 |
| Eco130I | CCWWGG | 2 cut(s) | 135, 267 |
| Eco57I | CTGAAG | 3 cut(s) | 354, 1394, 1535 |
| Eco88I | CYCGRG | 2 cut(s) | 326, 1527 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 941 |
| EcoRII | CCWGG | 2 cut(s) | 147, 942 |
| EcoT14I | CCWWGG | 2 cut(s) | 135, 267 |
| ErhI | CCWWGG | 2 cut(s) | 135, 267 |
| FaeI | CATG | 6 cut(s) | 683, 892, 1057, 1211, 1493, 1510 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 119, 151, 1110, 1142 |
| FaqI | GGGAC | 1 cut(s) | 972 |
| FatI | CATG | 6 cut(s) | 679, 888, 1053, 1207, 1489, 1506 |
| FauNDI | CATATG | 1 cut(s) | 1015 |
| FbaI | TGATCA | 1 cut(s) | 1395 |
| Fnu4HI | GCNGC | 3 cut(s) | 291, 294, 840 |
| FokI | GGATG | 4 cut(s) | 533, 655, 1144, 1506 |
| Fsp4HI | GCNGC | 3 cut(s) | 291, 294, 840 |
| FspBI | CTAG | 3 cut(s) | 21, 200, 210 |
| GlaI | GCGC | 1 cut(s) | 1143 |
| GluI | GCNGC | 3 cut(s) | 291, 294, 840 |
| GsuI | CTGGAG | 1 cut(s) | 642 |
| HaeIII | GGCC | 2 cut(s) | 921, 1089 |
| HapII | CCGG | 2 cut(s) | 1003, 1321 |
| HgaI | GACGC | 1 cut(s) | 1212 |
| HhaI | GCGC | 1 cut(s) | 1144 |
| Hin1I | GRCGYC | 1 cut(s) | 1223 |
| Hin1II | CATG | 6 cut(s) | 683, 892, 1057, 1211, 1493, 1510 |
| Hin6I | GCGC | 1 cut(s) | 1142 |
| HinP1I | GCGC | 1 cut(s) | 1142 |
| HindIII | AAGCTT | 2 cut(s) | 1066, 1124 |
| HinfI | GANTC | 5 cut(s) | 37, 484, 652, 1094, 1367 |
| HpaII | CCGG | 2 cut(s) | 1003, 1321 |
| HphI | GGTGA | 3 cut(s) | 785, 1325, 1405 |
| Hpy188I | TCNGA | 5 cut(s) | 72, 346, 676, 872, 1400 |
| Hpy188III | TCNNGA | 8 cut(s) | 722, 889, 905, 932, 1027, 1352, 1470, 1507 |
| HpyAV | CCTTC | 3 cut(s) | 463, 706, 949 |
| HpyCH4III | ACNGT | 2 cut(s) | 16, 448 |
| HpyCH4IV | ACGT | 3 cut(s) | 80, 1436, 1551 |
| HpyCH4V | TGCA | 5 cut(s) | 104, 143, 503, 703, 842 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 140, 859 |
| HpyF3I | CTNAG | 6 cut(s) | 25, 673, 783, 1122, 1197, 1340 |
| HpySE526I | ACGT | 3 cut(s) | 80, 1436, 1551 |
| Hsp92I | GRCGYC | 1 cut(s) | 1223 |
| Hsp92II | CATG | 6 cut(s) | 683, 892, 1057, 1211, 1493, 1510 |
| HspAI | GCGC | 1 cut(s) | 1142 |
| KpnI | GGTACC | 1 cut(s) | 1207 |
| Ksp22I | TGATCA | 1 cut(s) | 1395 |
| Kzo9I | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| LguI | GCTCTTC | 1 cut(s) | 1341 |
| LmnI | GCTCC | 2 cut(s) | 589, 1055 |
| Lsp1109I | GCAGC | 2 cut(s) | 280, 826 |
| LweI | GCATC | 2 cut(s) | 403, 1528 |
| MaeI | CTAG | 3 cut(s) | 21, 200, 210 |
| MaeII | ACGT | 3 cut(s) | 80, 1436, 1551 |
| MaeIII | GTNAC | 2 cut(s) | 10, 440 |
| MalI | GATC | 5 cut(s) | 76, 621, 978, 1031, 1397 |
| MboI | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| MfeI | CAATTG | 1 cut(s) | 972 |
| MflI | RGATCY | 1 cut(s) | 74 |
| MhlI | GDGCHC | 1 cut(s) | 56 |
| MlyI | GAGTC | 2 cut(s) | 31, 493 |
| MmeI | TCCRAC | 2 cut(s) | 895, 1165 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1479 |
| MseI | TTAA | 4 cut(s) | 108, 489, 1146, 1497 |
| MslI | CAYNNNNRTG | 1 cut(s) | 508 |
| MspA1I | CMGCKG | 1 cut(s) | 293 |
| MspI | CCGG | 2 cut(s) | 1003, 1321 |
| MspR9I | CCNGG | 2 cut(s) | 149, 944 |
| MunI | CAATTG | 1 cut(s) | 972 |
| Mva1269I | GAATGC | 1 cut(s) | 1158 |
| MvaI | CCWGG | 2 cut(s) | 149, 944 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 140, 859 |
| NdeI | CATATG | 1 cut(s) | 1015 |
| NdeII | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| NlaIII | CATG | 6 cut(s) | 683, 892, 1057, 1211, 1493, 1510 |
| NlaIV | GGNNCC | 1 cut(s) | 1205 |
| NmuCI | GTSAC | 1 cut(s) | 10 |
| NspI | RCATGY | 1 cut(s) | 683 |
| NspV | TTCGAA | 2 cut(s) | 547, 1483 |
| PaeI | GCATGC | 1 cut(s) | 683 |
| PaeR7I | CTCGAG | 1 cut(s) | 1527 |
| PagI | TCATGA | 2 cut(s) | 888, 1506 |
| PciSI | GCTCTTC | 1 cut(s) | 1341 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 841 |
| PctI | GAATGC | 1 cut(s) | 1158 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1479 |
| PfeI | GAWTC | 3 cut(s) | 652, 1094, 1367 |
| PflFI | GACNNNGTC | 1 cut(s) | 16 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 770 |
| PkrI | GCNGC | 3 cut(s) | 292, 295, 841 |
| PleI | GAGTC | 2 cut(s) | 31, 492 |
| PpsI | GAGTC | 2 cut(s) | 31, 492 |
| Ppu21I | YACGTR | 1 cut(s) | 1552 |
| PsiI | TTATAA | 1 cut(s) | 1280 |
| Psp1406I | AACGTT | 1 cut(s) | 1436 |
| Psp6I | CCWGG | 2 cut(s) | 147, 942 |
| PspGI | CCWGG | 2 cut(s) | 147, 942 |
| PspN4I | GGNNCC | 1 cut(s) | 1205 |
| PspPI | GGNCC | 1 cut(s) | 920 |
| PspXI | VCTCGAGB | 1 cut(s) | 1527 |
| PsuI | RGATCY | 1 cut(s) | 74 |
| PsyI | GACNNNGTC | 1 cut(s) | 16 |
| RsaI | GTAC | 2 cut(s) | 265, 1205 |
| RsaNI | GTAC | 2 cut(s) | 264, 1204 |
| RseI | CAYNNNNRTG | 1 cut(s) | 508 |
| SapI | GCTCTTC | 1 cut(s) | 1341 |
| SaqAI | TTAA | 4 cut(s) | 108, 489, 1146, 1497 |
| SatI | GCNGC | 3 cut(s) | 291, 294, 840 |
| Sau3AI | GATC | 5 cut(s) | 74, 619, 976, 1029, 1395 |
| Sau96I | GGNCC | 1 cut(s) | 920 |
| SchI | GAGTC | 2 cut(s) | 31, 493 |
| ScrFI | CCNGG | 2 cut(s) | 149, 944 |
| SduI | GDGCHC | 1 cut(s) | 56 |
| SfaNI | GCATC | 2 cut(s) | 403, 1528 |
| SfcI | CTRYAG | 2 cut(s) | 168, 243 |
| Sfr274I | CTCGAG | 1 cut(s) | 1527 |
| SfuI | TTCGAA | 2 cut(s) | 547, 1483 |
| SlaI | CTCGAG | 1 cut(s) | 1527 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 508 |
| SmlI | CTYRAG | 2 cut(s) | 1063, 1527 |
| SmoI | CTYRAG | 2 cut(s) | 1063, 1527 |
| SnaBI | TACGTA | 1 cut(s) | 1552 |
| SphI | GCATGC | 1 cut(s) | 683 |
| SsiI | CCGC | 3 cut(s) | 132, 291, 1106 |
| SspI | AATATT | 2 cut(s) | 899, 1465 |
| SspMI | CTAG | 3 cut(s) | 21, 200, 210 |
| StyD4I | CCNGG | 2 cut(s) | 147, 942 |
| StyI | CCWWGG | 2 cut(s) | 135, 267 |
| TaaI | ACNGT | 2 cut(s) | 16, 448 |
| TaiI | ACGT | 3 cut(s) | 83, 1439, 1554 |
| TaqI | TCGA | 5 cut(s) | 547, 608, 835, 1483, 1528 |
| TauI | GCSGC | 1 cut(s) | 293 |
| TfiI | GAWTC | 3 cut(s) | 652, 1094, 1367 |
| Tru1I | TTAA | 4 cut(s) | 108, 489, 1146, 1497 |
| Tru9I | TTAA | 4 cut(s) | 108, 489, 1146, 1497 |
| TscAI | CASTG | 3 cut(s) | 21, 451, 1377 |
| TseFI | GTSAC | 1 cut(s) | 10 |
| TseI | GCWGC | 2 cut(s) | 293, 839 |
| Tsp45I | GTSAC | 1 cut(s) | 10 |
| TspDTI | ATGAA | 9 cut(s) | 132, 300, 662, 725, 905, 1224, 1235, 1506, 1523 |
| TspRI | CASTG | 3 cut(s) | 21, 451, 1377 |
| Tth111I | GACNNNGTC | 1 cut(s) | 16 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 770 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 941 |
| XapI | RAATTY | 3 cut(s) | 736, 926, 1188 |
| XceI | RCATGY | 1 cut(s) | 683 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 346, 1387 |
| XhoI | CTCGAG | 1 cut(s) | 1527 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1479 |
| XspI | CTAG | 3 cut(s) | 21, 200, 210 |