AT5G24130

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0015153
Physical Location & Seq
Forward (+)
8161928 .. 8164066
2139 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24130.1

Sequence Viewer

Length: 951 bp
ATGGTGAAACTCGCGACGGCGCGTGAGATTAGAACGTACGGCCCTCGGCTTGGGAGGAGCAGAGCCGAGTACATCAACGCAGGTCTATACTTGTTTGCAACCGTGGTGCTCATCGGCGGTTTCACAGCGACAGGATTCTCATGGGAACCAAGATCCGGCCTCGTCCTTATTCTCTTAGCTCTCGTTCTTATAACCGCCGTGAATGTTCATGATCTTGTGGCTCATCTAGCTGGAATCGATTACCGGTTAAGGTTAATGGAGTATGATTTGCAACTGGGGCTAGTGGAATTTGCAGTCCCTCTGGTTCAGATAGCGGGTTCGGTAGTGTTTTTCTTGGGAATCTTTTTCGTCTTCCATCAGGCTGAGACAAAACGTGGATACAGTGGAAGAGAGCATCATGCATTAAACTTGCTGATAGCGGGTCCGTTACTTTGGTTGATAGGATCGATTCACAACTCATGCCAAATCTACGAGAGAGCGGATAGTCATGTTCAAATTCTACAGCAGTGTGTTTACATTCCTTTCTTGGTTGGATCCCTTCTATTCTTGGTTTCCGCAGTTCTCAATAGCCTCGACATATCCGGGTCATCTCGTAGTGGATTGAAGCTTCTTGGGGAAAGATGGATTTGGCTTGGGATTTCCGGGGCTATATGTTTGTTTGTGGGAGGATTGCTGAACGTTGTTAAGGTTTTTAACTTCGTCCAGATCTCTGGGCTCCGCCTCGAGAAACTACGGGGTGGAGCTCAAGACCGACTTCTTGAAGGGAGAGAAGGATATCTCCCTCTTGTTGCTGAAGAAGAAAGAATAAGGAAAATGGAAGCTGATCACGAAGCTTCTAGTAGAGCCAAACCCCGGGCACACACAACCTCCAAAGCCGGAGAGGGAGCTACAGAGACCGTGGTGGTATCATCTCCGACACCATACAAGGATGTTCTCGTTGGACAGATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

316

Amino Acids

34.68

Weight (kDa)

8.73

Isoelectric Point (pI)

30.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24130
fragaria_vesca FvH4_7g31090
malus_domestica MD01G1215900.v1.1 MD07G1285800.v1.1
pyrus_communis pycom07g25920
rosa_chinensis RchiOBHm_Chr1g0380171
rosa_laevigata RLG00000026324
rosa_multiflora Rmu_sc0001232.1_g000020 Rmu_sc0016989.1_g000005
rosa_roxburghii Rroxscaffold_4G00279610
rosa_rugosa Rorug01G0418500
rosa_samantha Rh1AG443400 Rh1BG398300 Rh1CG411700 Rh1DG429000
rosa_wichuraiana Rw1G038500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 191
Acc36I ACCTGC 1 cut(s) 71
AccBSI CCGCTC 1 cut(s) 479
AccII CGCG 2 cut(s) 14, 22
AciI CCGC 7 cut(s) 117, 195, 314, 419, 479, 555, 718
AclI AACGTT 1 cut(s) 678
AclWI GGATC 4 cut(s) 147, 451, 528, 541
AcsI RAATTY 2 cut(s) 287, 495
AcuI CTGAAG 1 cut(s) 813
AfaI GTAC 2 cut(s) 38, 71
AfiI CCNNNNNNNGG 3 cut(s) 50, 155, 852
AgeI ACCGGT 1 cut(s) 243
AgsI TTSAA 3 cut(s) 494, 604, 761
AluBI AGCT 7 cut(s) 179, 230, 607, 743, 821, 833, 887
AluI AGCT 7 cut(s) 179, 230, 607, 743, 821, 833, 887
Alw21I GWGCWC 2 cut(s) 111, 745
Alw26I GTCTC 2 cut(s) 359, 887
AlwI GGATC 4 cut(s) 147, 451, 528, 541
Ama87I CYCGRG 2 cut(s) 722, 852
AoxI GGCC 2 cut(s) 40, 157
ApoI RAATTY 2 cut(s) 287, 495
AsiGI ACCGGT 1 cut(s) 243
AspLEI GCGC 1 cut(s) 22
AspS9I GGNCC 2 cut(s) 41, 422
AsuC2I CCSGG 4 cut(s) 583, 643, 853, 854
AsuHPI GGTGA 1 cut(s) 16
AvaI CYCGRG 2 cut(s) 722, 852
AvaII GGWCC 1 cut(s) 422
BaeGI GKGCMC 1 cut(s) 859
BamHI GGATCC 1 cut(s) 533
BanII GRGCYC 2 cut(s) 717, 745
BbsI GAAGAC 1 cut(s) 343
Bbv12I GWGCWC 2 cut(s) 111, 745
BccI CCATC 2 cut(s) 363, 615
BceAI ACGGC 3 cut(s) 33, 55, 182
BciVI GTATCC 1 cut(s) 371
BclI TGATCA 1 cut(s) 823
BcnI CCSGG 4 cut(s) 583, 643, 853, 854
BcoDI GTCTC 2 cut(s) 359, 887
BfaI CTAG 3 cut(s) 227, 281, 837
BfmI CTRYAG 2 cut(s) 500, 888
BfuAI ACCTGC 1 cut(s) 71
BfuI GTATCC 1 cut(s) 371
BglII AGATCT 2 cut(s) 705, 945
Bme1390I CCNGG 4 cut(s) 583, 643, 853, 854
Bme18I GGWCC 1 cut(s) 422
BmeT110I CYCGRG 2 cut(s) 722, 852
BmgT120I GGNCC 2 cut(s) 41, 422
BmiI GGNNCC 4 cut(s) 147, 423, 535, 716
BmrFI CCNGG 4 cut(s) 583, 643, 853, 854
BmrI ACTGGG 1 cut(s) 284
BmsI GCATC 1 cut(s) 403
BmuI ACTGGG 1 cut(s) 284
BpiI GAAGAC 1 cut(s) 343
BpuEI CTTGAG 1 cut(s) 729
BpuMI CCSGG 4 cut(s) 583, 643, 853, 854
Bsa29I ATCGAT 2 cut(s) 237, 446
BsaI GGTCTC 1 cut(s) 887
BsaJI CCNNGG 6 cut(s) 44, 102, 642, 851, 852, 897
BsaWI WCCGGW 1 cut(s) 243
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 155, 852
Bse118I RCCGGY 1 cut(s) 243
Bse1I ACTGG 1 cut(s) 279
BseCI ATCGAT 2 cut(s) 237, 446
BseDI CCNNGG 6 cut(s) 44, 102, 642, 851, 852, 897
BseGI GGATG 1 cut(s) 934
BseLI CCNNNNNNNGG 3 cut(s) 50, 155, 852
BseMII CTCAG 1 cut(s) 354
BseNI ACTGG 1 cut(s) 279
BseRI GAGGAG 1 cut(s) 70
BseSI GKGCMC 1 cut(s) 859
Bsh1236I CGCG 2 cut(s) 14, 22
BshFI GGCC 2 cut(s) 42, 159
BshTI ACCGGT 1 cut(s) 243
BshVI ATCGAT 2 cut(s) 237, 446
BsiHKAI GWGCWC 2 cut(s) 111, 745
BsiHKCI CYCGRG 2 cut(s) 722, 852
BsiSI CCGG 6 cut(s) 156, 244, 582, 642, 853, 876
BsiWI CGTACG 1 cut(s) 36
BslFI GGGAC 1 cut(s) 281
BslI CCNNNNNNNGG 3 cut(s) 50, 155, 852
BsmAI GTCTC 2 cut(s) 359, 887
BsmFI GGGAC 1 cut(s) 281
BsnI GGCC 2 cut(s) 42, 159
Bso31I GGTCTC 1 cut(s) 887
BsoBI CYCGRG 2 cut(s) 722, 852
Bsp1286I GDGCHC 4 cut(s) 111, 717, 745, 859
Bsp143I GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
Bsp68I TCGCGA 1 cut(s) 14
BspACI CCGC 7 cut(s) 117, 195, 314, 419, 479, 555, 718
BspANI GGCC 2 cut(s) 42, 159
BspCNI CTCAG 1 cut(s) 355
BspDI ATCGAT 2 cut(s) 237, 446
BspFNI CGCG 2 cut(s) 14, 22
BspHI TCATGA 1 cut(s) 208
BspLI GGNNCC 4 cut(s) 147, 423, 535, 716
BspMI ACCTGC 1 cut(s) 71
BspPI GGATC 4 cut(s) 147, 451, 528, 541
BspTNI GGTCTC 1 cut(s) 887
BsrBI CCGCTC 1 cut(s) 479
BsrFI RCCGGY 1 cut(s) 243
BsrI ACTGG 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 243
BssECI CCNNGG 6 cut(s) 44, 102, 642, 851, 852, 897
BssMI GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
Bst4CI ACNGT 3 cut(s) 103, 383, 898
Bst6I CTCTTC 1 cut(s) 382
BstDEI CTNAG 2 cut(s) 175, 363
BstDSI CCRYGG 2 cut(s) 102, 897
BstF5I GGATG 1 cut(s) 934
BstFNI CGCG 2 cut(s) 14, 22
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 7 cut(s) 155, 214, 446, 536, 708, 826, 948
BstMAI GTCTC 2 cut(s) 359, 887
BstMBI GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
BstMWI GCNNNNNNNGC 2 cut(s) 227, 277
BstSCI CCNGG 4 cut(s) 581, 641, 851, 852
BstSFI CTRYAG 2 cut(s) 500, 888
BstSLI GKGCMC 1 cut(s) 859
BstUI CGCG 2 cut(s) 14, 22
BstV2I GAAGAC 1 cut(s) 343
BstX2I RGATCY 4 cut(s) 152, 533, 705, 945
BstXI CCANNNNNNTGG 1 cut(s) 710
BstYI RGATCY 4 cut(s) 152, 533, 705, 945
Bsu15I ATCGAT 2 cut(s) 237, 446
BsuI GTATCC 1 cut(s) 371
BsuRI GGCC 2 cut(s) 42, 159
BsuTUI ATCGAT 2 cut(s) 237, 446
BtgI CCRYGG 2 cut(s) 102, 897
BtsCI GGATG 1 cut(s) 934
BtsI GCAGTG 1 cut(s) 512
BtsIMutI CAGTG 2 cut(s) 388, 512
BtuMI TCGCGA 1 cut(s) 14
BveI ACCTGC 1 cut(s) 71
CciI TCATGA 1 cut(s) 208
CfoI GCGC 1 cut(s) 22
Cfr10I RCCGGY 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 41, 422
Cfr9I CCCGGG 1 cut(s) 852
ClaI ATCGAT 2 cut(s) 237, 446
Csp6I GTAC 2 cut(s) 37, 70
CspAI ACCGGT 1 cut(s) 243
CviAII CATG 5 cut(s) 141, 209, 398, 459, 488
CviQI GTAC 2 cut(s) 37, 70
DdeI CTNAG 2 cut(s) 175, 363
DpnI GATC 7 cut(s) 154, 213, 445, 535, 707, 825, 947
DpnII GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
Eam1104I CTCTTC 1 cut(s) 382
EarI CTCTTC 1 cut(s) 382
EciI GGCGGA 1 cut(s) 707
Ecl136II GAGCTC 1 cut(s) 743
Eco24I GRGCYC 2 cut(s) 717, 745
Eco31I GGTCTC 1 cut(s) 887
Eco32I GATATC 1 cut(s) 776
Eco47I GGWCC 1 cut(s) 422
Eco53kI GAGCTC 1 cut(s) 743
Eco57I CTGAAG 1 cut(s) 813
Eco88I CYCGRG 2 cut(s) 722, 852
EcoICRI GAGCTC 1 cut(s) 743
EcoRV GATATC 1 cut(s) 776
EcoT22I ATGCAT 1 cut(s) 403
EcoT38I GRGCYC 2 cut(s) 717, 745
FaeI CATG 5 cut(s) 144, 212, 401, 462, 491
FalI AAGNNNNNCTT 2 cut(s) 738, 770
FaqI GGGAC 1 cut(s) 281
FatI CATG 5 cut(s) 140, 208, 397, 458, 487
FauI CCCGC 2 cut(s) 307, 412
FbaI TGATCA 1 cut(s) 823
FokI GGATG 1 cut(s) 941
FriOI GRGCYC 2 cut(s) 717, 745
FspBI CTAG 3 cut(s) 227, 281, 837
GlaI GCGC 1 cut(s) 21
HaeIII GGCC 2 cut(s) 42, 159
HapII CCGG 6 cut(s) 156, 244, 582, 642, 853, 876
HhaI GCGC 1 cut(s) 22
Hin1II CATG 5 cut(s) 144, 212, 401, 462, 491
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HindIII AAGCTT 2 cut(s) 605, 831
HinfI GANTC 4 cut(s) 135, 234, 339, 448
HpaII CCGG 6 cut(s) 156, 244, 582, 642, 853, 876
HphI GGTGA 1 cut(s) 16
Hpy166II GTNNAC 1 cut(s) 514
Hpy188I TCNGA 3 cut(s) 309, 915, 950
Hpy188III TCNNGA 7 cut(s) 13, 209, 703, 724, 746, 758, 827
Hpy8I GTNNAC 1 cut(s) 514
Hpy99I CGWCG 1 cut(s) 19
HpyAV CCTTC 3 cut(s) 548, 755, 764
HpyCH4III ACNGT 3 cut(s) 103, 383, 898
HpyCH4IV ACGT 3 cut(s) 35, 373, 678
HpyCH4V TGCA 4 cut(s) 98, 271, 293, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 277
HpyF3I CTNAG 2 cut(s) 175, 363
HpySE526I ACGT 3 cut(s) 35, 373, 678
Hsp92II CATG 5 cut(s) 144, 212, 401, 462, 491
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 1 cut(s) 823
Kzo9I GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
LmnI GCTCC 4 cut(s) 57, 720, 740, 884
LweI GCATC 1 cut(s) 403
MaeI CTAG 3 cut(s) 227, 281, 837
MaeII ACGT 3 cut(s) 35, 373, 678
MaeIII GTNAC 1 cut(s) 426
MalI GATC 7 cut(s) 154, 213, 445, 535, 707, 825, 947
MbiI CCGCTC 1 cut(s) 479
MboI GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
MboII GAAGA 4 cut(s) 343, 399, 806, 809
MflI RGATCY 4 cut(s) 152, 533, 705, 945
MhlI GDGCHC 4 cut(s) 111, 717, 745, 859
MluCI AATT 2 cut(s) 287, 495
MmeI TCCRAC 3 cut(s) 511, 919, 938
Mph1103I ATGCAT 1 cut(s) 403
MseI TTAA 5 cut(s) 248, 254, 404, 684, 693
MspI CCGG 6 cut(s) 156, 244, 582, 642, 853, 876
MspR9I CCNGG 4 cut(s) 583, 643, 853, 854
MvnI CGCG 2 cut(s) 14, 22
MwoI GCNNNNNNNGC 2 cut(s) 227, 277
NciI CCSGG 4 cut(s) 583, 643, 853, 854
NdeII GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
NlaIII CATG 5 cut(s) 144, 212, 401, 462, 491
NlaIV GGNNCC 4 cut(s) 147, 423, 535, 716
NmeAIII GCCGAG 2 cut(s) 25, 91
NruI TCGCGA 1 cut(s) 14
NsiI ATGCAT 1 cut(s) 403
PaeR7I CTCGAG 1 cut(s) 722
PagI TCATGA 1 cut(s) 208
PfeI GAWTC 4 cut(s) 135, 234, 339, 448
Pfl23II CGTACG 1 cut(s) 36
PinAI ACCGGT 1 cut(s) 243
PsiI TTATAA 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 745
Psp1406I AACGTT 1 cut(s) 678
PspLI CGTACG 1 cut(s) 36
PspN4I GGNNCC 4 cut(s) 147, 423, 535, 716
PspPI GGNCC 2 cut(s) 41, 422
PsuI RGATCY 4 cut(s) 152, 533, 705, 945
RruI TCGCGA 1 cut(s) 14
RsaI GTAC 2 cut(s) 38, 71
RsaNI GTAC 2 cut(s) 37, 70
SacI GAGCTC 1 cut(s) 745
SaqAI TTAA 5 cut(s) 248, 254, 404, 684, 693
Sau3AI GATC 7 cut(s) 152, 211, 443, 533, 705, 823, 945
Sau96I GGNCC 2 cut(s) 41, 422
ScrFI CCNGG 4 cut(s) 583, 643, 853, 854
SduI GDGCHC 4 cut(s) 111, 717, 745, 859
SfaNI GCATC 1 cut(s) 403
SfcI CTRYAG 2 cut(s) 500, 888
Sfr274I CTCGAG 1 cut(s) 722
SinI GGWCC 1 cut(s) 422
SlaI CTCGAG 1 cut(s) 722
SmaI CCCGGG 1 cut(s) 854
SmlI CTYRAG 2 cut(s) 722, 744
SmoI CTYRAG 2 cut(s) 722, 744
Sse9I AATT 2 cut(s) 287, 495
SsiI CCGC 7 cut(s) 117, 195, 314, 419, 479, 555, 718
SspMI CTAG 3 cut(s) 227, 281, 837
SstI GAGCTC 1 cut(s) 745
StyD4I CCNGG 4 cut(s) 581, 641, 851, 852
TaaI ACNGT 3 cut(s) 103, 383, 898
TaiI ACGT 3 cut(s) 38, 376, 681
TaqI TCGA 4 cut(s) 237, 446, 573, 723
TaqII GACCGA 1 cut(s) 765
TasI AATT 2 cut(s) 287, 495
TatI WGTACW 1 cut(s) 69
TfiI GAWTC 4 cut(s) 135, 234, 339, 448
Tru1I TTAA 5 cut(s) 248, 254, 404, 684, 693
Tru9I TTAA 5 cut(s) 248, 254, 404, 684, 693
TscAI CASTG 2 cut(s) 388, 512
TspDTI ATGAA 1 cut(s) 197
TspGWI ACGGA 1 cut(s) 414
TspMI CCCGGG 1 cut(s) 852
TspRI CASTG 2 cut(s) 388, 512
VpaK11BI GGWCC 1 cut(s) 422
XapI RAATTY 2 cut(s) 287, 495
XhoI CTCGAG 1 cut(s) 722
XmaI CCCGGG 1 cut(s) 852
XspI CTAG 3 cut(s) 227, 281, 837
Zsp2I ATGCAT 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.