Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0015153

Physical Location & Seq

Genomic Coordinates Forward (+)

30895363 .. 30897006

Gene Structure 1644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1215900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTGAAGCTGGCGTCGGCAAGGGAGTTCCGAATGTACGGCCCGCAGCTGAGCCGGAACCGTGCCGAGTACATGAACGCGGGGCTCTACGTGTTTGCCACCGCGGTGCTGCTCCTCGGGTTCGTGGCCCAGCTGTCGAACGAGCCCAAGTCGGGCCGACTCCTCATGCTTATAGCCTTCTCGTTAATTTTGGTGGTGAATTTGCATGATCTTGTGGCTCACCTGGCCATGTTCGATTACCGGATGCCGTTGATGGAGTTCGACTTGCAGCTCGCCCTCGTCGAGTTTGCTGTCCCGGTGGTTCATGCAGTAGGCACGGTTCTATCGTTCTTGGGGATTCTTTTCCTTCTTATTCAGTTGGAGAAAGGATATGGGTACTCTAAGCTTGAGAGGCATGCAAAGAACATGCTAATTGCTGGTCCTGTTCTGTGGCTGCTCGGATCGATCCACAACTCGTGCCAAATCTACGAGAGGGCAGACGGGCATTTCCAAATACTTCAACAAAGTGTGCATATCCCATTTCTGATTGGGAGTGTGTTGTTCACAGTAGCTGCAATTCTCAACAGCCGTGAGCAACATGGACTGTCCCTTCATGGCCTACAGATACTGGGTAGAACTTGGGTGTGGCTGGGGACGGGAGGAAGCCTGTTGTTCCTGATTGGAGGACTAGCAAATGTGGTGAAGGTGTTCAAGATGCAACAAATGGGTGATGGACTGAGGCTTGAGAAACTGCGGGGAGGGGCGCAGGAGAGGCTCGTTCGCGGAAGGGAAGGCCATGTTCCGCTTATCGTCGAAGATCATCGGAGGAGATGGTCACAAAGACCATCAGCTCGTTACGATAACAATCATCATACGCATCATGTGGAACCAAATCCAAATGTAGCTGCAGAACCAGCTCCAACTCCTTGCAAAGATGTTCTTGTTGGTCAGACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:0097159 GO:1901363 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

313

Amino Acids

34.83

Weight (kDa)

9.42

Isoelectric Point (pI)

40.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24130
fragaria_vesca	FvH4_7g31090
malus_domestica	MD01G1215900.v1.1 MD07G1285800.v1.1
pyrus_communis	pycom07g25920
rosa_chinensis	RchiOBHm_Chr1g0380171
rosa_laevigata	RLG00000026324
rosa_multiflora	Rmu_sc0001232.1_g000020 Rmu_sc0016989.1_g000005
rosa_roxburghii	Rroxscaffold_4G00279610
rosa_rugosa	Rorug01G0418500
rosa_samantha	Rh1AG443400 Rh1BG398300 Rh1CG411700 Rh1DG429000
rosa_wichuraiana	Rw1G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	80, 104, 762
AciI	CCGC	7 cut(s)	44, 80, 102, 104, 733, 762, 782
AclWI	GGATC	2 cut(s)	439, 448
AcoI	YGGCCR	1 cut(s)	225
AcsI	RAATTY	1 cut(s)	199
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	3 cut(s)	38, 71, 377
AfiI	CCNNNNNNNGG	1 cut(s)	152
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	2 cut(s)	500, 691
AjnI	CCWGG	1 cut(s)	222
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	9 cut(s)	10, 49, 133, 271, 385, 551, 830, 884, 896
AluI	AGCT	9 cut(s)	10, 49, 133, 271, 385, 551, 830, 884, 896
AlwI	GGATC	2 cut(s)	439, 448
AlwNI	CAGNNNCTG	2 cut(s)	551, 607
Ama87I	CYCGRG	1 cut(s)	116
AoxI	GGCC	6 cut(s)	40, 126, 154, 225, 595, 772
ApeKI	GCWGC	6 cut(s)	46, 109, 268, 433, 551, 884
ApoI	RAATTY	1 cut(s)	199
Asp700I	GAANNNNTTC	1 cut(s)	686
AspLEI	GCGC	1 cut(s)	745
AspS9I	GGNCC	4 cut(s)	41, 127, 154, 419
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	5 cut(s)	16, 208, 212, 691, 719
AvaI	CYCGRG	1 cut(s)	116
AvaII	GGWCC	1 cut(s)	419
BalI	TGGCCA	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	87, 147
BauI	CACGAG	1 cut(s)	454
BbvI	GCAGC	6 cut(s)	58, 96, 280, 420, 538, 871
BccI	CCATC	4 cut(s)	247, 704, 804, 832
BceAI	ACGGC	3 cut(s)	55, 232, 552
BciT130I	CCWGG	1 cut(s)	224
BcnI	CCSGG	1 cut(s)	296
BfaI	CTAG	1 cut(s)	668
BfmI	CTRYAG	2 cut(s)	599, 885
BisI	GCNGC	6 cut(s)	47, 110, 269, 434, 552, 885
BlpI	GCTNAGC	1 cut(s)	50
BlsI	GCNGC	6 cut(s)	48, 111, 270, 435, 553, 886
Bme1390I	CCNGG	2 cut(s)	224, 296
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	116
BmgT120I	GGNCC	4 cut(s)	41, 127, 154, 419
BmiI	GGNNCC	2 cut(s)	59, 867
BmrFI	CCNGG	2 cut(s)	224, 296
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	3 cut(s)	234, 684, 865
BmuI	ACTGGG	1 cut(s)	617
Bpu1102I	GCTNAGC	1 cut(s)	50
BpuEI	CTTGAG	2 cut(s)	407, 743
BpuMI	CCSGG	1 cut(s)	296
Bsa29I	ATCGAT	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	843
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	2 cut(s)	102, 115
BsaWI	WCCGGW	1 cut(s)	240
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse1I	ACTGG	1 cut(s)	612
Bse8I	GATNNNNATC	1 cut(s)	843
BseBI	CCWGG	1 cut(s)	224
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	2 cut(s)	102, 115
BseGI	GGATG	1 cut(s)	249
BseJI	GATNNNNATC	1 cut(s)	843
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseMII	CTCAG	2 cut(s)	41, 707
BseNI	ACTGG	1 cut(s)	612
BseRI	GAGGAG	3 cut(s)	104, 152, 820
BseXI	GCAGC	6 cut(s)	58, 96, 280, 420, 538, 871
BseYI	CCCAGC	2 cut(s)	129, 628
Bsh1236I	CGCG	3 cut(s)	80, 104, 762
BshFI	GGCC	6 cut(s)	42, 128, 156, 227, 597, 774
BshVI	ATCGAT	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	116
BsiSI	CCGG	3 cut(s)	55, 241, 296
BslFI	GGGAC	3 cut(s)	278, 571, 646
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmFI	GGGAC	3 cut(s)	278, 571, 646
BsnI	GGCC	6 cut(s)	42, 128, 156, 227, 597, 774
BsoBI	CYCGRG	1 cut(s)	116
Bsp1286I	GDGCHC	2 cut(s)	87, 147
Bsp143I	GATC	4 cut(s)	208, 440, 444, 796
Bsp1720I	GCTNAGC	1 cut(s)	50
BspACI	CCGC	7 cut(s)	44, 80, 102, 104, 733, 762, 782
BspANI	GGCC	6 cut(s)	42, 128, 156, 227, 597, 774
BspCNI	CTCAG	2 cut(s)	42, 708
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	3 cut(s)	80, 104, 762
BspLI	GGNNCC	2 cut(s)	59, 867
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	2 cut(s)	439, 448
BsrI	ACTGG	1 cut(s)	612
BssECI	CCNNGG	2 cut(s)	102, 115
BssMI	GATC	4 cut(s)	208, 440, 444, 796
BssNI	GRCGYC	1 cut(s)	14
BssSI	CACGAG	1 cut(s)	454
Bst2BI	CACGAG	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	4 cut(s)	62, 319, 547, 585
BstACI	GRCGYC	1 cut(s)	14
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	4 cut(s)	12, 44, 273, 396
BstDEI	CTNAG	3 cut(s)	50, 381, 716
BstDSI	CCRYGG	1 cut(s)	102
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	3 cut(s)	80, 104, 762
BstHHI	GCGC	1 cut(s)	745
BstKTI	GATC	4 cut(s)	211, 443, 447, 799
BstMBI	GATC	4 cut(s)	208, 440, 444, 796
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 391, 751, 893
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	2 cut(s)	398, 409
BstSCI	CCNGG	2 cut(s)	222, 294
BstSFI	CTRYAG	2 cut(s)	599, 885
BstUI	CGCG	3 cut(s)	80, 104, 762
BstV1I	GCAGC	6 cut(s)	58, 96, 280, 420, 538, 871
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	6 cut(s)	42, 128, 156, 227, 597, 774
BsuTUI	ATCGAT	1 cut(s)	443
BtgI	CCRYGG	1 cut(s)	102
BtsCI	GGATG	1 cut(s)	249
Cac8I	GCNNGC	4 cut(s)	12, 44, 273, 396
CaiI	CAGNNNCTG	2 cut(s)	551, 607
CfoI	GCGC	1 cut(s)	745
Cfr13I	GGNCC	4 cut(s)	41, 127, 154, 419
Cfr42I	CCGCGG	1 cut(s)	105
ClaI	ATCGAT	1 cut(s)	443
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	3 cut(s)	37, 70, 376
CviQI	GTAC	3 cut(s)	37, 70, 376
DdeI	CTNAG	3 cut(s)	50, 381, 716
DpnI	GATC	4 cut(s)	210, 442, 446, 798
DpnII	GATC	4 cut(s)	208, 440, 444, 796
EaeI	YGGCCR	1 cut(s)	225
Eco24I	GRGCYC	2 cut(s)	87, 147
Eco47I	GGWCC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	222
EcoT38I	GRGCYC	2 cut(s)	87, 147
FalI	AAGNNNNNCTT	2 cut(s)	903, 935
FaqI	GGGAC	3 cut(s)	278, 571, 646
FauI	CCCGC	3 cut(s)	51, 73, 726
Fnu4HI	GCNGC	6 cut(s)	47, 110, 269, 434, 552, 885
FokI	GGATG	1 cut(s)	256
FriOI	GRGCYC	2 cut(s)	87, 147
Fsp4HI	GCNGC	6 cut(s)	47, 110, 269, 434, 552, 885
FspBI	CTAG	1 cut(s)	668
GlaI	GCGC	1 cut(s)	744
GluI	GCNGC	6 cut(s)	47, 110, 269, 434, 552, 885
GsaI	CCCAGC	2 cut(s)	133, 632
HaeIII	GGCC	6 cut(s)	42, 128, 156, 227, 597, 774
HapII	CCGG	3 cut(s)	55, 241, 296
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	1 cut(s)	745
Hin1I	GRCGYC	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	743
HinP1I	GCGC	1 cut(s)	743
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	2 cut(s)	159, 337
HpaII	CCGG	3 cut(s)	55, 241, 296
HphI	GGTGA	5 cut(s)	16, 208, 212, 691, 719
Hpy166II	GTNNAC	1 cut(s)	543
Hpy188I	TCNGA	5 cut(s)	32, 440, 525, 804, 930
Hpy188III	TCNNGA	2 cut(s)	655, 691
Hpy8I	GTNNAC	1 cut(s)	543
Hpy99I	CGWCG	3 cut(s)	19, 284, 794
HpyAV	CCTTC	6 cut(s)	187, 356, 599, 676, 759, 764
HpyCH4III	ACNGT	4 cut(s)	62, 319, 547, 585
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	9 cut(s)	205, 268, 308, 398, 511, 554, 697, 887, 909
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 391, 751, 893
HpyF3I	CTNAG	3 cut(s)	50, 381, 716
HpySE526I	ACGT	1 cut(s)	90
Hsp92I	GRCGYC	1 cut(s)	14
HspAI	GCGC	1 cut(s)	743
KspI	CCGCGG	1 cut(s)	105
Kzo9I	GATC	4 cut(s)	208, 440, 444, 796
LmnI	GCTCC	2 cut(s)	117, 901
Lsp1109I	GCAGC	6 cut(s)	58, 96, 280, 420, 538, 871
LweI	GCATC	3 cut(s)	234, 684, 865
MaeI	CTAG	1 cut(s)	668
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	813, 833
MalI	GATC	4 cut(s)	210, 442, 446, 798
MboI	GATC	4 cut(s)	208, 440, 444, 796
MboII	GAAGA	1 cut(s)	806
MhlI	GDGCHC	2 cut(s)	87, 147
MlsI	TGGCCA	1 cut(s)	227
MluCI	AATT	4 cut(s)	186, 199, 411, 555
MluNI	TGGCCA	1 cut(s)	227
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	2 cut(s)	339, 923
Mox20I	TGGCCA	1 cut(s)	227
MroXI	GAANNNNTTC	1 cut(s)	686
MscI	TGGCCA	1 cut(s)	227
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	227
MspA1I	CMGCKG	3 cut(s)	49, 104, 133
MspI	CCGG	3 cut(s)	55, 241, 296
MspR9I	CCNGG	2 cut(s)	224, 296
MvaI	CCWGG	1 cut(s)	224
MvnI	CGCG	3 cut(s)	80, 104, 762
MwoI	GCNNNNNNNGC	4 cut(s)	224, 391, 751, 893
NciI	CCSGG	1 cut(s)	296
NdeII	GATC	4 cut(s)	208, 440, 444, 796
NlaIV	GGNNCC	2 cut(s)	59, 867
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	813
NspI	RCATGY	2 cut(s)	398, 409
OliI	CACNNNNGTG	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	398
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 323
PdmI	GAANNNNTTC	1 cut(s)	686
PfeI	GAWTC	1 cut(s)	337
PkrI	GCNGC	6 cut(s)	48, 111, 270, 435, 553, 886
PleI	GAGTC	1 cut(s)	153
PpsI	GAGTC	1 cut(s)	153
Ppu21I	YACGTR	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	222
PspFI	CCCAGC	2 cut(s)	129, 628
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	2 cut(s)	59, 867
PspPI	GGNCC	4 cut(s)	41, 127, 154, 419
PsrI	GAACNNNNNNTAC	2 cut(s)	303, 335
PstI	CTGCAG	1 cut(s)	889
PstNI	CAGNNNCTG	2 cut(s)	551, 607
PvuII	CAGCTG	2 cut(s)	49, 133
RsaI	GTAC	3 cut(s)	38, 71, 377
RsaNI	GTAC	3 cut(s)	37, 70, 376
RseI	CAYNNNNRTG	1 cut(s)	104
SacII	CCGCGG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	6 cut(s)	47, 110, 269, 434, 552, 885
Sau3AI	GATC	4 cut(s)	208, 440, 444, 796
Sau96I	GGNCC	4 cut(s)	41, 127, 154, 419
SchI	GAGTC	1 cut(s)	153
ScrFI	CCNGG	2 cut(s)	224, 296
SduI	GDGCHC	2 cut(s)	87, 147
SfaNI	GCATC	3 cut(s)	234, 684, 865
SfcI	CTRYAG	2 cut(s)	599, 885
Sfr303I	CCGCGG	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	105
SinI	GGWCC	1 cut(s)	419
SmiMI	CAYNNNNRTG	1 cut(s)	104
SmlI	CTYRAG	2 cut(s)	386, 722
SmoI	CTYRAG	2 cut(s)	386, 722
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	4 cut(s)	186, 199, 411, 555
SsiI	CCGC	7 cut(s)	44, 80, 102, 104, 733, 762, 782
SspMI	CTAG	1 cut(s)	668
StyD4I	CCNGG	2 cut(s)	222, 294
TaaI	ACNGT	4 cut(s)	62, 319, 547, 585
TaiI	ACGT	1 cut(s)	93
TaqI	TCGA	6 cut(s)	137, 234, 261, 282, 443, 792
TasI	AATT	4 cut(s)	186, 199, 411, 555
TatI	WGTACW	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	337
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	813
TseI	GCWGC	6 cut(s)	46, 109, 268, 433, 551, 884
Tsp45I	GTSAC	1 cut(s)	813
TspDTI	ATGAA	3 cut(s)	89, 293, 581
VpaK11BI	GGWCC	1 cut(s)	419
XapI	RAATTY	1 cut(s)	199
XceI	RCATGY	2 cut(s)	398, 409
XmnI	GAANNNNTTC	1 cut(s)	686
XspI	CTAG	1 cut(s)	668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.