Rroxscaffold_4G00279610

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0015153
Physical Location & Seq
Reverse (-)
2362549 .. 2364406
1858 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00279610.1

Sequence Viewer

Length: 912 bp
ATGGTGAAGCTGGCATCAGCGCGAGAGGCCCGAATGTACGGGCCGCGGCTGAGCCGGAACCGCGCCGAGTACATAAACGCCGGGCTATATGTCTTCGCGACCGCGGTGCTGCTCGGTGGATTTGTGGCTGAGCTGTCGAAGGAGCCAACGTCGGGTCTTGTTCTTTTGCTCATAGGGTTTGCGCTGGTTTTTATAGTGAATTTGCACGATCTGTTGGCCCATCTGGCCGGGTTCGATTACCGGGTGAGGTTGATGGAGCTGGACTTGCAACTTGCGCTCGTTGAGTTTGCGGTTCCGGTGGTGCAGGGTTTGGGTTCGCTTCTCTGGTTCTTGGCCATTCTTTTCCTCTTCATTCAGGTTGAGAAAGGATATCGCTACTACAAGCTTGAGAGACATGCCATGAATATGCTTATTGCTGGCCCTGTTTTATGGTTGCTTGGTTCAATCCACAACTCGTGTCAAATTTATGAGAGATCAGATGGACACGTCCAGATCTTGCAACAGAGCGTACAGATTCCATTTCTCATTGCTAGTGTATTGTTCACAATAGGCGCGGTTTCTAATATCCTTGAACAAGGAGGAGGTGTATATCATGGCCTGGAGCTACTGGGTGGGACTTGGATATGGATGGGCATATTTGGTAGCGTATTGCTCCTAGTCGGAGGTTTGGCAAATGTGGTGAAGGTGTTCAAGATGCAACAGATGGATGACGGCGCCATCCTAAGGCTCGAGAAGTTGAGGGGAGGGGCACAGGAGCGACTCGTTCACGAAAGGGAAGGGCAGGTTCCTCTTATTCTAGAAGATCAAAGGAGGAGAAAAAGGCAACTAGCCCAGCAGCAGCAGGAACCAAGTATCCATATTGCAGCACCACAGCCCACTCCTTATAAAGATGTTCTTGTTGGTCAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

303

Amino Acids

33.77

Weight (kDa)

8.61

Isoelectric Point (pI)

45.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24130
fragaria_vesca FvH4_7g31090
malus_domestica MD01G1215900.v1.1 MD07G1285800.v1.1
pyrus_communis pycom07g25920
rosa_chinensis RchiOBHm_Chr1g0380171
rosa_laevigata RLG00000026324
rosa_multiflora Rmu_sc0001232.1_g000020 Rmu_sc0016989.1_g000005
rosa_roxburghii Rroxscaffold_4G00279610
rosa_rugosa Rorug01G0418500
rosa_samantha Rh1AG443400 Rh1BG398300 Rh1CG411700 Rh1DG429000
rosa_wichuraiana Rw1G038500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 885
Acc36I ACCTGC 1 cut(s) 772
AccB1I GGYRCC 1 cut(s) 713
AccII CGCG 6 cut(s) 22, 46, 63, 98, 104, 554
AciI CCGC 7 cut(s) 44, 46, 61, 102, 104, 290, 554
AcoI YGGCCR 2 cut(s) 225, 333
AcsI RAATTY 2 cut(s) 199, 462
AcyI GRCGYC 1 cut(s) 714
AfaI GTAC 3 cut(s) 38, 71, 510
AfiI CCNNNNNNNGG 2 cut(s) 152, 723
AflIII ACRYGT 1 cut(s) 484
AgsI TTSAA 3 cut(s) 444, 572, 691
AjiI CACGTC 1 cut(s) 487
AjnI CCWGG 1 cut(s) 597
AloI GAACNNNNNNTCC 2 cut(s) 837, 869
AluBI AGCT 5 cut(s) 10, 133, 259, 385, 604
AluI AGCT 5 cut(s) 10, 133, 259, 385, 604
Alw26I GTCTC 1 cut(s) 385
Ama87I CYCGRG 1 cut(s) 728
AoxI GGCC 7 cut(s) 27, 41, 216, 225, 333, 418, 595
ApeKI GCWGC 4 cut(s) 109, 835, 838, 863
ApoI RAATTY 2 cut(s) 199, 462
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 6 cut(s) 22, 65, 184, 277, 554, 716
AspS9I GGNCC 4 cut(s) 28, 41, 217, 419
AsuC2I CCSGG 3 cut(s) 82, 229, 242
AsuHPI GGTGA 3 cut(s) 16, 256, 691
AvaI CYCGRG 1 cut(s) 728
AxyI CCTNAGG 1 cut(s) 722
BaeGI GKGCMC 1 cut(s) 751
BalI TGGCCA 1 cut(s) 335
BanI GGYRCC 1 cut(s) 713
BauI CACGAG 1 cut(s) 454
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 4 cut(s) 96, 847, 850, 875
BccI CCATC 6 cut(s) 228, 247, 473, 622, 697, 725
BceAI ACGGC 1 cut(s) 727
BcgI CGANNNNNNTGC 2 cut(s) 88, 122
BciT130I CCWGG 1 cut(s) 599
BciVI GTATCC 1 cut(s) 863
BcnI CCSGG 3 cut(s) 82, 229, 242
BcoDI GTCTC 1 cut(s) 385
BfaI CTAG 4 cut(s) 531, 656, 797, 827
BfoI RGCGCY 1 cut(s) 717
BfuAI ACCTGC 1 cut(s) 772
BfuI GTATCC 1 cut(s) 863
BglI GCCNNNNNGGC 1 cut(s) 224
BglII AGATCT 1 cut(s) 492
BisI GCNGC 6 cut(s) 44, 47, 110, 836, 839, 864
BlpI GCTNAGC 2 cut(s) 50, 129
BlsI GCNGC 6 cut(s) 45, 48, 111, 837, 840, 865
Bme1390I CCNGG 4 cut(s) 82, 229, 242, 599
BmeT110I CYCGRG 1 cut(s) 728
BmgBI CACGTC 1 cut(s) 487
BmgT120I GGNCC 4 cut(s) 28, 41, 217, 419
BmiI GGNNCC 6 cut(s) 59, 144, 294, 715, 786, 846
BmrFI CCNGG 4 cut(s) 82, 229, 242, 599
BmrI ACTGGG 1 cut(s) 617
BmsI GCATC 2 cut(s) 23, 684
BmuI ACTGGG 1 cut(s) 617
BpiI GAAGAC 1 cut(s) 85
BpmI CTGGAG 1 cut(s) 620
Bpu1102I GCTNAGC 2 cut(s) 50, 129
BpuEI CTTGAG 1 cut(s) 407
BpuMI CCSGG 3 cut(s) 82, 229, 242
BsaHI GRCGYC 1 cut(s) 714
BsaJI CCNNGG 2 cut(s) 44, 102
BsaWI WCCGGW 1 cut(s) 295
BsaXI ACNNNNNCTCC 4 cut(s) 134, 164, 570, 600
Bsc4I CCNNNNNNNGG 2 cut(s) 152, 723
Bse1I ACTGG 1 cut(s) 612
Bse21I CCTNAGG 1 cut(s) 722
Bse3DI GCAATG 1 cut(s) 525
BseBI CCWGG 1 cut(s) 599
BseDI CCNNGG 2 cut(s) 44, 102
BseGI GGATG 3 cut(s) 633, 712, 717
BseLI CCNNNNNNNGG 2 cut(s) 152, 723
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 2 cut(s) 41, 120
BseNI ACTGG 1 cut(s) 612
BseRI GAGGAG 2 cut(s) 594, 826
BseSI GKGCMC 1 cut(s) 751
BseXI GCAGC 4 cut(s) 96, 847, 850, 875
BseYI CCCAGC 1 cut(s) 831
BsgI GTGCAG 1 cut(s) 323
Bsh1236I CGCG 6 cut(s) 22, 46, 63, 98, 104, 554
Bsh1285I CGRYCG 1 cut(s) 102
BshFI GGCC 7 cut(s) 29, 43, 218, 227, 335, 420, 597
BshNI GGYRCC 1 cut(s) 713
BsiEI CGRYCG 1 cut(s) 102
BsiHKCI CYCGRG 1 cut(s) 728
BsiSI CCGG 5 cut(s) 55, 81, 228, 241, 296
BslFI GGGAC 1 cut(s) 628
BslI CCNNNNNNNGG 2 cut(s) 152, 723
BsmAI GTCTC 1 cut(s) 385
BsmFI GGGAC 1 cut(s) 628
BsnI GGCC 7 cut(s) 29, 43, 218, 227, 335, 420, 597
BsoBI CYCGRG 1 cut(s) 728
Bsp1286I GDGCHC 1 cut(s) 751
Bsp143I GATC 4 cut(s) 208, 473, 492, 802
Bsp1720I GCTNAGC 2 cut(s) 50, 129
Bsp68I TCGCGA 1 cut(s) 98
BspACI CCGC 7 cut(s) 44, 46, 61, 102, 104, 290, 554
BspANI GGCC 7 cut(s) 29, 43, 218, 227, 335, 420, 597
BspCNI CTCAG 2 cut(s) 42, 121
BspFNI CGCG 6 cut(s) 22, 46, 63, 98, 104, 554
BspLI GGNNCC 6 cut(s) 59, 144, 294, 715, 786, 846
BspMI ACCTGC 1 cut(s) 772
BspT107I GGYRCC 1 cut(s) 713
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 1 cut(s) 612
BssECI CCNNGG 2 cut(s) 44, 102
BssMI GATC 4 cut(s) 208, 473, 492, 802
BssNI GRCGYC 1 cut(s) 714
BssSI CACGAG 1 cut(s) 454
Bst2BI CACGAG 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 353
BstACI GRCGYC 1 cut(s) 714
BstC8I GCNNGC 2 cut(s) 12, 418
BstDEI CTNAG 3 cut(s) 50, 129, 722
BstDSI CCRYGG 2 cut(s) 44, 102
BstF5I GGATG 3 cut(s) 633, 712, 717
BstFNI CGCG 6 cut(s) 22, 46, 63, 98, 104, 554
BstH2I RGCGCY 1 cut(s) 717
BstHHI GCGC 6 cut(s) 22, 65, 184, 277, 554, 716
BstKTI GATC 4 cut(s) 211, 476, 495, 805
BstMAI GTCTC 1 cut(s) 385
BstMBI GATC 4 cut(s) 208, 473, 492, 802
BstMCI CGRYCG 1 cut(s) 102
BstMWI GCNNNNNNNGC 5 cut(s) 26, 60, 224, 265, 274
BstNI CCWGG 1 cut(s) 599
BstNSI RCATGY 1 cut(s) 398
BstSCI CCNGG 4 cut(s) 80, 227, 240, 597
BstSLI GKGCMC 1 cut(s) 751
BstUI CGCG 6 cut(s) 22, 46, 63, 98, 104, 554
BstV1I GCAGC 4 cut(s) 96, 847, 850, 875
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 492
BstYI RGATCY 1 cut(s) 492
Bsu36I CCTNAGG 1 cut(s) 722
BsuI GTATCC 1 cut(s) 863
BsuRI GGCC 7 cut(s) 29, 43, 218, 227, 335, 420, 597
BtgI CCRYGG 2 cut(s) 44, 102
BtrI CACGTC 1 cut(s) 487
BtsCI GGATG 3 cut(s) 633, 712, 717
BtuMI TCGCGA 1 cut(s) 98
BveI ACCTGC 1 cut(s) 772
Cac8I GCNNGC 2 cut(s) 12, 418
CfoI GCGC 6 cut(s) 22, 65, 184, 277, 554, 716
Cfr13I GGNCC 4 cut(s) 28, 41, 217, 419
Cfr42I CCGCGG 2 cut(s) 47, 105
Csp6I GTAC 3 cut(s) 37, 70, 509
CviAII CATG 3 cut(s) 395, 400, 593
CviQI GTAC 3 cut(s) 37, 70, 509
DdeI CTNAG 3 cut(s) 50, 129, 722
DinI GGCGCC 1 cut(s) 715
DpnI GATC 4 cut(s) 210, 475, 494, 804
DpnII GATC 4 cut(s) 208, 473, 492, 802
EaeI YGGCCR 2 cut(s) 225, 333
Eam1104I CTCTTC 1 cut(s) 353
EarI CTCTTC 1 cut(s) 353
Eco32I GATATC 1 cut(s) 371
Eco81I CCTNAGG 1 cut(s) 722
Eco88I CYCGRG 1 cut(s) 728
EcoRII CCWGG 1 cut(s) 597
EcoRV GATATC 1 cut(s) 371
EgeI GGCGCC 1 cut(s) 715
EheI GGCGCC 1 cut(s) 715
FaeI CATG 3 cut(s) 398, 403, 596
FalI AAGNNNNNCTT 2 cut(s) 879, 911
FaqI GGGAC 1 cut(s) 628
FatI CATG 3 cut(s) 394, 399, 592
Fnu4HI GCNGC 6 cut(s) 44, 47, 110, 836, 839, 864
FokI GGATG 3 cut(s) 640, 704, 719
Fsp4HI GCNGC 6 cut(s) 44, 47, 110, 836, 839, 864
FspBI CTAG 4 cut(s) 531, 656, 797, 827
GlaI GCGC 6 cut(s) 21, 64, 183, 276, 553, 715
GluI GCNGC 6 cut(s) 44, 47, 110, 836, 839, 864
GsaI CCCAGC 1 cut(s) 835
GsuI CTGGAG 1 cut(s) 620
HaeII RGCGCY 1 cut(s) 717
HaeIII GGCC 7 cut(s) 29, 43, 218, 227, 335, 420, 597
HapII CCGG 5 cut(s) 55, 81, 228, 241, 296
HhaI GCGC 6 cut(s) 22, 65, 184, 277, 554, 716
Hin1I GRCGYC 1 cut(s) 714
Hin1II CATG 3 cut(s) 398, 403, 596
Hin6I GCGC 6 cut(s) 20, 63, 182, 275, 552, 714
HinP1I GCGC 6 cut(s) 20, 63, 182, 275, 552, 714
HindIII AAGCTT 1 cut(s) 383
HinfI GANTC 2 cut(s) 514, 759
HpaII CCGG 5 cut(s) 55, 81, 228, 241, 296
HphI GGTGA 3 cut(s) 16, 256, 691
Hpy166II GTNNAC 2 cut(s) 543, 766
Hpy188I TCNGA 2 cut(s) 478, 662
Hpy188III TCNNGA 6 cut(s) 97, 490, 691, 730, 767, 797
Hpy8I GTNNAC 2 cut(s) 543, 766
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 3 cut(s) 133, 676, 770
HpyCH4IV ACGT 2 cut(s) 149, 486
HpyCH4V TGCA 6 cut(s) 205, 268, 304, 499, 697, 863
HpyF10VI GCNNNNNNNGC 5 cut(s) 26, 60, 224, 265, 274
HpyF3I CTNAG 3 cut(s) 50, 129, 722
HpySE526I ACGT 2 cut(s) 149, 486
Hsp92I GRCGYC 1 cut(s) 714
Hsp92II CATG 3 cut(s) 398, 403, 596
HspAI GCGC 6 cut(s) 20, 63, 182, 275, 552, 714
KasI GGCGCC 1 cut(s) 713
KspI CCGCGG 2 cut(s) 47, 105
Kzo9I GATC 4 cut(s) 208, 473, 492, 802
LmnI GCTCC 5 cut(s) 142, 256, 601, 657, 754
Lsp1109I GCAGC 4 cut(s) 96, 847, 850, 875
LweI GCATC 2 cut(s) 23, 684
MaeI CTAG 4 cut(s) 531, 656, 797, 827
MaeII ACGT 2 cut(s) 149, 486
MalI GATC 4 cut(s) 210, 475, 494, 804
MboI GATC 4 cut(s) 208, 473, 492, 802
MboII GAAGA 3 cut(s) 85, 340, 812
MflI RGATCY 1 cut(s) 492
MhlI GDGCHC 1 cut(s) 751
MlsI TGGCCA 1 cut(s) 335
MluCI AATT 2 cut(s) 199, 462
MluNI TGGCCA 1 cut(s) 335
Mly113I GGCGCC 1 cut(s) 714
MlyI GAGTC 1 cut(s) 753
MmeI TCCRAC 1 cut(s) 640
Mox20I TGGCCA 1 cut(s) 335
MroXI GAANNNNTTC 1 cut(s) 686
MscI TGGCCA 1 cut(s) 335
MseI TTAA 1 cut(s) 910
MslI CAYNNNNRTG 1 cut(s) 404
Msp20I TGGCCA 1 cut(s) 335
MspA1I CMGCKG 2 cut(s) 46, 104
MspI CCGG 5 cut(s) 55, 81, 228, 241, 296
MspR9I CCNGG 4 cut(s) 82, 229, 242, 599
MvaI CCWGG 1 cut(s) 599
MvnI CGCG 6 cut(s) 22, 46, 63, 98, 104, 554
MwoI GCNNNNNNNGC 5 cut(s) 26, 60, 224, 265, 274
NarI GGCGCC 1 cut(s) 714
NciI CCSGG 3 cut(s) 82, 229, 242
NdeII GATC 4 cut(s) 208, 473, 492, 802
NlaIII CATG 3 cut(s) 398, 403, 596
NlaIV GGNNCC 6 cut(s) 59, 144, 294, 715, 786, 846
NmeAIII GCCGAG 1 cut(s) 91
NruI TCGCGA 1 cut(s) 98
NspI RCATGY 1 cut(s) 398
PaeR7I CTCGAG 1 cut(s) 728
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 6 cut(s) 45, 48, 111, 837, 840, 865
PleI GAGTC 1 cut(s) 753
PluTI GGCGCC 1 cut(s) 717
PpsI GAGTC 1 cut(s) 753
PsiI TTATAA 1 cut(s) 885
Psp6I CCWGG 1 cut(s) 597
PspFI CCCAGC 1 cut(s) 831
PspGI CCWGG 1 cut(s) 597
PspN4I GGNNCC 6 cut(s) 59, 144, 294, 715, 786, 846
PspPI GGNCC 4 cut(s) 28, 41, 217, 419
PsuI RGATCY 1 cut(s) 492
RruI TCGCGA 1 cut(s) 98
RsaI GTAC 3 cut(s) 38, 71, 510
RsaNI GTAC 3 cut(s) 37, 70, 509
RseI CAYNNNNRTG 1 cut(s) 404
SacII CCGCGG 2 cut(s) 47, 105
SaqAI TTAA 1 cut(s) 910
SatI GCNGC 6 cut(s) 44, 47, 110, 836, 839, 864
Sau3AI GATC 4 cut(s) 208, 473, 492, 802
Sau96I GGNCC 4 cut(s) 28, 41, 217, 419
SchI GAGTC 1 cut(s) 753
ScrFI CCNGG 4 cut(s) 82, 229, 242, 599
SduI GDGCHC 1 cut(s) 751
SfaNI GCATC 2 cut(s) 23, 684
SfiI GGCCNNNNNGGCC 1 cut(s) 224
SfoI GGCGCC 1 cut(s) 715
Sfr274I CTCGAG 1 cut(s) 728
Sfr303I CCGCGG 2 cut(s) 47, 105
SgrBI CCGCGG 2 cut(s) 47, 105
SlaI CTCGAG 1 cut(s) 728
SmiMI CAYNNNNRTG 1 cut(s) 404
SmlI CTYRAG 2 cut(s) 386, 728
SmoI CTYRAG 2 cut(s) 386, 728
Sse9I AATT 2 cut(s) 199, 462
SsiI CCGC 7 cut(s) 44, 46, 61, 102, 104, 290, 554
SspDI GGCGCC 1 cut(s) 713
SspMI CTAG 4 cut(s) 531, 656, 797, 827
StyD4I CCNGG 4 cut(s) 80, 227, 240, 597
TaiI ACGT 2 cut(s) 152, 489
TaqI TCGA 3 cut(s) 137, 234, 729
TasI AATT 2 cut(s) 199, 462
TatI WGTACW 1 cut(s) 69
TauI GCSGC 2 cut(s) 46, 49
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 1 cut(s) 910
Tru9I TTAA 1 cut(s) 910
TseI GCWGC 4 cut(s) 109, 835, 838, 863
TspDTI ATGAA 2 cut(s) 340, 416
XapI RAATTY 2 cut(s) 199, 462
XbaI TCTAGA 1 cut(s) 796
XceI RCATGY 1 cut(s) 398
XhoI CTCGAG 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 686
XspI CTAG 4 cut(s) 531, 656, 797, 827
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.