Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0015153

Physical Location & Seq

Genomic Coordinates Forward (+)

34783930 .. 34785619

Gene Structure 1690 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1285800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTGAAGCTGGCGTCGGCAAGGGAATTCCGAATGTACGGCCCACGGCTGAGCCGGAACCGGGCCGAGTACATGAACGCGGGGCTCTACGTGTTTGCCACCGTGGTGCTGCTTGGCGGGTTCGTGGCTCAGCTGTCGAAAGAACCCAAGTCAGGCCTAGTCCTGATGCTAATAGCCTTGGCGTTAATTTTGGTGGTGAATTTGCATGATCTGGTGGCACATCTTGCCATGTTCGATTGCCGGATGCCGTTGATGGAATTCAACTTGCAGCTCGCCCTCGTCGAGTTTGCTGTCCCGGTGGTTCAGGCTTTGGGAACGGTTCTTTCGTTCTTGGGAATTCTTTTCCTCCTAATTCAGGCGGAGAAAGGATATGGATACTCTAAGCTTGAAAGGCATGCGAAGAACATGCTCATTGCTGGTCCTGTTTTGTGGCTGCTCGGATCGATCCACAATTCATGCCAAATCTACGAGAGGGCAGACGGGCATGTCCAAATACTGCAACAAAGTATCCACATCCCTTTTCTGATTGGGAGTGTCTTGTTCACAGTTGGTGCAATTCTCAACAGCCGTGAGCAACATGGATTGTTCCTTCATGGCCTACAGCTACTGGGTAGGAATTGGGTGTGGCTGGGGATGGGAGGAAGCCTGTTCTTCCTGATTGGAGGACTAGCAAATGTCGTGAAGGTGTTCAAGATGCAACAAATGGGCGATGGACTGAGGCTCGAGAAACTTCGGGGAGGCGCGCAGGAGAGGCTTGTTCACGAAAGGGAAGGCCAGGTTCCGCTTATCCTCGAAGATCACCGGAGGAGATCATCACAAAGATCATCAGTTCGTCACGATGATGAACATCATTTACATCATGTAGAACCTAATCCAAACGCAGCTGCAGAACCAGTTCCTACTCCTTACAAGGACGTTCTTGTTGGTCAGACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:0097159 GO:1901363 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

313

Amino Acids

34.77

Weight (kDa)

9.1

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24130
fragaria_vesca	FvH4_7g31090
malus_domestica	MD01G1215900.v1.1 MD07G1285800.v1.1
pyrus_communis	pycom07g25920
rosa_chinensis	RchiOBHm_Chr1g0380171
rosa_laevigata	RLG00000026324
rosa_multiflora	Rmu_sc0001232.1_g000020 Rmu_sc0016989.1_g000005
rosa_roxburghii	Rroxscaffold_4G00279610
rosa_rugosa	Rorug01G0418500
rosa_samantha	Rh1AG443400 Rh1BG398300 Rh1CG411700 Rh1DG429000
rosa_wichuraiana	Rw1G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	485
AccII	CGCG	2 cut(s)	80, 743
AciI	CCGC	4 cut(s)	80, 117, 359, 782
AclWI	GGATC	2 cut(s)	439, 448
AcsI	RAATTY	4 cut(s)	26, 199, 257, 336
AcyI	GRCGYC	1 cut(s)	14
AfaI	GTAC	2 cut(s)	38, 71
AfiI	CCNNNNNNNGG	3 cut(s)	61, 152, 355
AflIII	ACRYGT	1 cut(s)	90
AgsI	TTSAA	3 cut(s)	262, 389, 691
AjnI	CCWGG	1 cut(s)	774
AleI	CACNNNNGTG	1 cut(s)	104
AluBI	AGCT	6 cut(s)	10, 133, 271, 385, 604, 884
AluI	AGCT	6 cut(s)	10, 133, 271, 385, 604, 884
AlwI	GGATC	2 cut(s)	439, 448
AlwNI	CAGNNNCTG	1 cut(s)	607
Ama87I	CYCGRG	1 cut(s)	722
AoxI	GGCC	5 cut(s)	40, 63, 154, 595, 772
ApeKI	GCWGC	5 cut(s)	109, 268, 433, 881, 884
ApoI	RAATTY	4 cut(s)	26, 199, 257, 336
Asp700I	GAANNNNTTC	2 cut(s)	686, 894
AspLEI	GCGC	2 cut(s)	743, 745
AspS9I	GGNCC	3 cut(s)	41, 63, 419
AsuC2I	CCSGG	2 cut(s)	62, 296
AsuHPI	GGTGA	3 cut(s)	16, 208, 791
AvaI	CYCGRG	1 cut(s)	722
AvaII	GGWCC	1 cut(s)	419
BanII	GRGCYC	1 cut(s)	87
BbvI	GCAGC	5 cut(s)	96, 280, 420, 871, 893
BccI	CCATC	3 cut(s)	247, 628, 704
BceAI	ACGGC	4 cut(s)	55, 62, 232, 552
BcgI	CGANNNNNNTGC	2 cut(s)	388, 422
BciT130I	CCWGG	1 cut(s)	776
BciVI	GTATCC	2 cut(s)	368, 518
BcnI	CCSGG	2 cut(s)	62, 296
BfaI	CTAG	2 cut(s)	158, 668
BfmI	CTRYAG	2 cut(s)	599, 885
BfuI	GTATCC	2 cut(s)	368, 518
BisI	GCNGC	5 cut(s)	110, 269, 434, 882, 885
BlpI	GCTNAGC	2 cut(s)	50, 129
BlsI	GCNGC	5 cut(s)	111, 270, 435, 883, 886
Bme1390I	CCNGG	3 cut(s)	62, 296, 776
Bme18I	GGWCC	1 cut(s)	419
BmeT110I	CYCGRG	1 cut(s)	722
BmgT120I	GGNCC	3 cut(s)	41, 63, 419
BmiI	GGNNCC	2 cut(s)	59, 780
BmrFI	CCNGG	3 cut(s)	62, 296, 776
BmrI	ACTGGG	1 cut(s)	617
BmsI	GCATC	3 cut(s)	156, 234, 684
BmuI	ACTGGG	1 cut(s)	617
Bpu1102I	GCTNAGC	2 cut(s)	50, 129
BpuMI	CCSGG	2 cut(s)	62, 296
Bsa29I	ATCGAT	1 cut(s)	443
BsaAI	YACGTR	1 cut(s)	91
BsaBI	GATNNNNATC	1 cut(s)	846
BsaHI	GRCGYC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	44, 102, 177
BsaWI	WCCGGW	1 cut(s)	801
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 152, 355
Bse1I	ACTGG	2 cut(s)	612, 893
Bse3DI	GCAATG	1 cut(s)	411
Bse8I	GATNNNNATC	1 cut(s)	846
BseBI	CCWGG	1 cut(s)	776
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	3 cut(s)	44, 102, 177
BseGI	GGATG	3 cut(s)	249, 513, 639
BseJI	GATNNNNATC	1 cut(s)	846
BseLI	CCNNNNNNNGG	3 cut(s)	61, 152, 355
BseMI	GCAATG	1 cut(s)	411
BseMII	CTCAG	3 cut(s)	41, 143, 707
BseNI	ACTGG	2 cut(s)	612, 893
BsePI	GCGCGC	1 cut(s)	741
BseRI	GAGGAG	1 cut(s)	820
BseXI	GCAGC	5 cut(s)	96, 280, 420, 871, 893
BseYI	CCCAGC	1 cut(s)	628
Bsh1236I	CGCG	2 cut(s)	80, 743
BshFI	GGCC	5 cut(s)	42, 65, 156, 597, 774
BshVI	ATCGAT	1 cut(s)	443
BsiHKCI	CYCGRG	1 cut(s)	722
BsiSI	CCGG	5 cut(s)	55, 61, 241, 296, 802
BslFI	GGGAC	1 cut(s)	278
BslI	CCNNNNNNNGG	3 cut(s)	61, 152, 355
BsmFI	GGGAC	1 cut(s)	278
BsnI	GGCC	5 cut(s)	42, 65, 156, 597, 774
BsoBI	CYCGRG	1 cut(s)	722
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
Bsp1720I	GCTNAGC	2 cut(s)	50, 129
BspACI	CCGC	4 cut(s)	80, 117, 359, 782
BspANI	GGCC	5 cut(s)	42, 65, 156, 597, 774
BspCNI	CTCAG	3 cut(s)	42, 142, 708
BspDI	ATCGAT	1 cut(s)	443
BspFNI	CGCG	2 cut(s)	80, 743
BspLI	GGNNCC	2 cut(s)	59, 780
BspMAI	CTGCAG	1 cut(s)	889
BspPI	GGATC	2 cut(s)	439, 448
BsrDI	GCAATG	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	612, 893
BssECI	CCNNGG	3 cut(s)	44, 102, 177
BssHII	GCGCGC	1 cut(s)	741
BssMI	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
BssNI	GRCGYC	1 cut(s)	14
BssT1I	CCWWGG	1 cut(s)	177
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	3 cut(s)	103, 319, 547
BstACI	GRCGYC	1 cut(s)	14
BstAPI	GCANNNNNTGC	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	91
BstC8I	GCNNGC	4 cut(s)	12, 273, 396, 743
BstDEI	CTNAG	4 cut(s)	50, 129, 381, 716
BstDSI	CCRYGG	2 cut(s)	44, 102
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	3 cut(s)	249, 513, 639
BstFNI	CGCG	2 cut(s)	80, 743
BstHHI	GCGC	2 cut(s)	743, 745
BstKTI	GATC	6 cut(s)	211, 443, 447, 799, 812, 824
BstMBI	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 391, 751
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	3 cut(s)	398, 409, 488
BstSCI	CCNGG	3 cut(s)	60, 294, 774
BstSFI	CTRYAG	2 cut(s)	599, 885
BstUI	CGCG	2 cut(s)	80, 743
BstV1I	GCAGC	5 cut(s)	96, 280, 420, 871, 893
Bsu15I	ATCGAT	1 cut(s)	443
BsuI	GTATCC	2 cut(s)	368, 518
BsuRI	GGCC	5 cut(s)	42, 65, 156, 597, 774
BsuTUI	ATCGAT	1 cut(s)	443
BtgI	CCRYGG	2 cut(s)	44, 102
BtgZI	GCGATG	1 cut(s)	723
BtsCI	GGATG	3 cut(s)	249, 513, 639
Cac8I	GCNNGC	4 cut(s)	12, 273, 396, 743
CaiI	CAGNNNCTG	1 cut(s)	607
CfoI	GCGC	2 cut(s)	743, 745
Cfr13I	GGNCC	3 cut(s)	41, 63, 419
ClaI	ATCGAT	1 cut(s)	443
CseI	GACGC	1 cut(s)	3
Csp6I	GTAC	2 cut(s)	37, 70
CviQI	GTAC	2 cut(s)	37, 70
DdeI	CTNAG	4 cut(s)	50, 129, 381, 716
DpnI	GATC	6 cut(s)	210, 442, 446, 798, 811, 823
DpnII	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
DrdI	GACNNNNNNGTC	1 cut(s)	485
DseDI	GACNNNNNNGTC	1 cut(s)	485
EciI	GGCGGA	1 cut(s)	374
Eco130I	CCWWGG	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	419
Eco88I	CYCGRG	1 cut(s)	722
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoRI	GAATTC	3 cut(s)	26, 257, 336
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	1 cut(s)	177
EcoT38I	GRGCYC	1 cut(s)	87
ErhI	CCWWGG	1 cut(s)	177
FaqI	GGGAC	1 cut(s)	278
FauI	CCCGC	2 cut(s)	73, 110
Fnu4HI	GCNGC	5 cut(s)	110, 269, 434, 882, 885
FokI	GGATG	3 cut(s)	256, 500, 646
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	5 cut(s)	110, 269, 434, 882, 885
FspBI	CTAG	2 cut(s)	158, 668
GlaI	GCGC	2 cut(s)	742, 744
GluI	GCNGC	5 cut(s)	110, 269, 434, 882, 885
GsaI	CCCAGC	1 cut(s)	632
HaeIII	GGCC	5 cut(s)	42, 65, 156, 597, 774
HapII	CCGG	5 cut(s)	55, 61, 241, 296, 802
HgaI	GACGC	1 cut(s)	3
HhaI	GCGC	2 cut(s)	743, 745
Hin1I	GRCGYC	1 cut(s)	14
Hin6I	GCGC	2 cut(s)	741, 743
HinP1I	GCGC	2 cut(s)	741, 743
HindIII	AAGCTT	1 cut(s)	383
HpaII	CCGG	5 cut(s)	55, 61, 241, 296, 802
HphI	GGTGA	3 cut(s)	16, 208, 791
Hpy166II	GTNNAC	2 cut(s)	543, 760
Hpy188I	TCNGA	4 cut(s)	32, 440, 525, 930
Hpy188III	TCNNGA	7 cut(s)	163, 655, 679, 691, 724, 761, 836
Hpy8I	GTNNAC	2 cut(s)	543, 760
Hpy99I	CGWCG	2 cut(s)	19, 284
HpyAV	CCTTC	3 cut(s)	599, 676, 764
HpyCH4III	ACNGT	3 cut(s)	103, 319, 547
HpyCH4IV	ACGT	2 cut(s)	90, 915
HpyCH4V	TGCA	6 cut(s)	205, 268, 499, 554, 697, 887
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 391, 751
HpyF3I	CTNAG	4 cut(s)	50, 129, 381, 716
HpySE526I	ACGT	2 cut(s)	90, 915
Hsp92I	GRCGYC	1 cut(s)	14
HspAI	GCGC	2 cut(s)	741, 743
Kzo9I	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
Lsp1109I	GCAGC	5 cut(s)	96, 280, 420, 871, 893
LweI	GCATC	3 cut(s)	156, 234, 684
MaeI	CTAG	2 cut(s)	158, 668
MaeII	ACGT	2 cut(s)	90, 915
MaeIII	GTNAC	1 cut(s)	833
MalI	GATC	6 cut(s)	210, 442, 446, 798, 811, 823
MboI	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
MboII	GAAGA	3 cut(s)	412, 643, 806
MhlI	GDGCHC	1 cut(s)	87
MluCI	AATT	9 cut(s)	26, 186, 199, 257, 336, 351, 451, 555, 616
MroXI	GAANNNNTTC	2 cut(s)	686, 894
MseI	TTAA	1 cut(s)	185
MslI	CAYNNNNRTG	2 cut(s)	104, 840
MspA1I	CMGCKG	2 cut(s)	133, 884
MspI	CCGG	5 cut(s)	55, 61, 241, 296, 802
MspR9I	CCNGG	3 cut(s)	62, 296, 776
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	2 cut(s)	80, 743
MwoI	GCNNNNNNNGC	3 cut(s)	224, 391, 751
NciI	CCSGG	2 cut(s)	62, 296
NdeII	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
NlaIV	GGNNCC	2 cut(s)	59, 780
NmeAIII	GCCGAG	1 cut(s)	91
NmuCI	GTSAC	1 cut(s)	833
NspI	RCATGY	3 cut(s)	398, 409, 488
OliI	CACNNNNGTG	1 cut(s)	104
PaeI	GCATGC	1 cut(s)	398
PaeR7I	CTCGAG	1 cut(s)	722
PauI	GCGCGC	1 cut(s)	741
PceI	AGGCCT	1 cut(s)	156
PcsI	WCGNNNNNNNCGW	2 cut(s)	279, 323
PdmI	GAANNNNTTC	2 cut(s)	686, 894
PkrI	GCNGC	5 cut(s)	111, 270, 435, 883, 886
Ppu21I	YACGTR	1 cut(s)	91
Psp6I	CCWGG	1 cut(s)	774
PspFI	CCCAGC	1 cut(s)	628
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	2 cut(s)	59, 780
PspPI	GGNCC	3 cut(s)	41, 63, 419
PsrI	GAACNNNNNNTAC	2 cut(s)	837, 869
PstI	CTGCAG	1 cut(s)	889
PstNI	CAGNNNCTG	1 cut(s)	607
PteI	GCGCGC	1 cut(s)	741
PvuII	CAGCTG	2 cut(s)	133, 884
RsaI	GTAC	2 cut(s)	38, 71
RsaNI	GTAC	2 cut(s)	37, 70
RseI	CAYNNNNRTG	2 cut(s)	104, 840
SaqAI	TTAA	1 cut(s)	185
SatI	GCNGC	5 cut(s)	110, 269, 434, 882, 885
Sau3AI	GATC	6 cut(s)	208, 440, 444, 796, 809, 821
Sau96I	GGNCC	3 cut(s)	41, 63, 419
ScrFI	CCNGG	3 cut(s)	62, 296, 776
SduI	GDGCHC	1 cut(s)	87
SfaNI	GCATC	3 cut(s)	156, 234, 684
SfcI	CTRYAG	2 cut(s)	599, 885
Sfr274I	CTCGAG	1 cut(s)	722
SinI	GGWCC	1 cut(s)	419
SlaI	CTCGAG	1 cut(s)	722
SmiMI	CAYNNNNRTG	2 cut(s)	104, 840
SmlI	CTYRAG	1 cut(s)	722
SmoI	CTYRAG	1 cut(s)	722
SphI	GCATGC	1 cut(s)	398
Sse9I	AATT	9 cut(s)	26, 186, 199, 257, 336, 351, 451, 555, 616
SseBI	AGGCCT	1 cut(s)	156
SsiI	CCGC	4 cut(s)	80, 117, 359, 782
SspMI	CTAG	2 cut(s)	158, 668
StuI	AGGCCT	1 cut(s)	156
StyD4I	CCNGG	3 cut(s)	60, 294, 774
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	3 cut(s)	103, 319, 547
TaiI	ACGT	2 cut(s)	93, 918
TaqI	TCGA	6 cut(s)	137, 234, 282, 443, 723, 792
TasI	AATT	9 cut(s)	26, 186, 199, 257, 336, 351, 451, 555, 616
TatI	WGTACW	1 cut(s)	69
Tru1I	TTAA	1 cut(s)	185
Tru9I	TTAA	1 cut(s)	185
TseFI	GTSAC	1 cut(s)	833
TseI	GCWGC	5 cut(s)	109, 268, 433, 881, 884
Tsp45I	GTSAC	1 cut(s)	833
TspDTI	ATGAA	4 cut(s)	89, 444, 581, 858
VpaK11BI	GGWCC	1 cut(s)	419
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	4 cut(s)	26, 199, 257, 336
XceI	RCATGY	3 cut(s)	398, 409, 488
XhoI	CTCGAG	1 cut(s)	722
XmnI	GAANNNNTTC	2 cut(s)	686, 894
XspI	CTAG	2 cut(s)	158, 668

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.