FvH4_7g31090

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0015153
Physical Location & Seq
Forward (+)
22500631 .. 22502864
2234 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31090.t1

Sequence Viewer

Length: 1005 bp
ATGGTGAAGAATTTGGTACAAACTTTCTTTACATTTCTGTACAAATTACTGAAATCCCAAGTCGATCAGTACAGAGAAAACGCAGACCTTAAAATGGTGAAGCTCGCATCGGCGCGTGAGGCACGAATGTACGGGCCGCGGTTGAGCCGGAACCGCGCCGAGTACATAAACGCCGGGCTGTACGTTTTCGCCATGGCGGTGCTGCTCGGCGGTTTTGCGGCTGAGATGTCCAAGGAGCCAACGTCAGGTCTAGTTCTTTTGCTCATAGGGTTTGCGCTGGTTTTGTTAGTGAATCTGCATGATCTGTTGGCCCATCTGGCTGGGTTCGATTACCGGTTGAGAATGATGGAGCTGGACTTGCAGCTTGCGTTCGTTGAGTTTGCGGTTCCGGTGGTGCAGGCTTTGGGTTCGCTTCTTTGGTTCTTGGGCATTCTCTTCCTCTTCATTCAGGCTGAGAGAGGATATGGCTTCTATAAGCTTGAGAAACATGCGATGAATATGCTTATTGCTGGCCCTGTTCTATGGTTGCTTGGTTCAATCCACAACTCGTGTCAAATCTATGAGAGATCAGATGGACACGTCCAGATCTTGCAACAGAGTGTACAGATTCCGTTTCTTATTGCTAGTGTATTGTTCACAATAGGCGCGGTTCTTAATATCCTTGAACAAGGAGGAGTAGTATATCATGGCCTGGAGCTACTGGGTGGGACTTGGATATGGATGGGAATAGCTGGCAGCACATTGCTCCTTGTTGGAGGTTTAGCGAATGTGGTGAAGGTGTTCAAGATGCAACAGATGGATGACGGTGCCATCCTAAGGCTCGAGAAATTGAGGGGAGGGGCACAGGAGCGACTCGTACATGAAAGGGAAGGTCAAGTTCCTCTTATTCTAGAAGATCAAAGGAGGAGAAAAAGACAACTATCCCAGCAACAACAGGAACCAAGTATCCATATTGCAGCACCACAGCCTACTCCTTATAAAGATGTTCTTGTTGGTCAAAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

335

Amino Acids

37.45

Weight (kDa)

8.85

Isoelectric Point (pI)

44.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015153)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24130
fragaria_vesca FvH4_7g31090
malus_domestica MD01G1215900.v1.1 MD07G1285800.v1.1
pyrus_communis pycom07g25920
rosa_chinensis RchiOBHm_Chr1g0380171
rosa_laevigata RLG00000026324
rosa_multiflora Rmu_sc0001232.1_g000020 Rmu_sc0016989.1_g000005
rosa_roxburghii Rroxscaffold_4G00279610
rosa_rugosa Rorug01G0418500
rosa_samantha Rh1AG443400 Rh1BG398300 Rh1CG411700 Rh1DG429000
rosa_wichuraiana Rw1G038500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 978
AccB1I GGYRCC 1 cut(s) 806
AccII CGCG 4 cut(s) 115, 139, 156, 647
AciI CCGC 8 cut(s) 137, 139, 154, 197, 210, 218, 383, 647
AcsI RAATTY 1 cut(s) 10
AfaI GTAC 8 cut(s) 18, 41, 71, 131, 164, 182, 603, 858
AfiI CCNNNNNNNGG 3 cut(s) 94, 245, 816
AflIII ACRYGT 1 cut(s) 577
AgeI ACCGGT 1 cut(s) 333
AgsI TTSAA 3 cut(s) 537, 665, 784
AjiI CACGTC 1 cut(s) 580
AjnI CCWGG 1 cut(s) 690
AloI GAACNNNNNNTCC 2 cut(s) 930, 962
AluBI AGCT 6 cut(s) 103, 352, 364, 478, 697, 731
AluI AGCT 6 cut(s) 103, 352, 364, 478, 697, 731
Ama87I CYCGRG 1 cut(s) 821
AoxI GGCC 4 cut(s) 134, 309, 511, 688
ApeKI GCWGC 4 cut(s) 202, 361, 735, 956
ApoI RAATTY 1 cut(s) 10
AsiGI ACCGGT 1 cut(s) 333
Asp700I GAANNNNTTC 1 cut(s) 779
AspLEI GCGC 4 cut(s) 115, 158, 277, 647
AspS9I GGNCC 3 cut(s) 134, 310, 512
AsuC2I CCSGG 1 cut(s) 175
AsuHPI GGTGA 3 cut(s) 16, 109, 784
AvaI CYCGRG 1 cut(s) 821
AxyI CCTNAGG 1 cut(s) 815
BaeGI GKGCMC 1 cut(s) 844
BanI GGYRCC 1 cut(s) 806
BauI CACGAG 1 cut(s) 547
BbvI GCAGC 4 cut(s) 189, 373, 747, 968
BccI CCATC 6 cut(s) 321, 340, 566, 715, 790, 818
BcgI CGANNNNNNTGC 2 cut(s) 481, 515
BciT130I CCWGG 1 cut(s) 692
BciVI GTATCC 1 cut(s) 956
BcnI CCSGG 1 cut(s) 175
BfaI CTAG 3 cut(s) 251, 624, 890
BfuI GTATCC 1 cut(s) 956
BglI GCCNNNNNGGC 1 cut(s) 317
BglII AGATCT 1 cut(s) 585
BisI GCNGC 6 cut(s) 137, 203, 219, 362, 736, 957
BlsI GCNGC 6 cut(s) 138, 204, 220, 363, 737, 958
Bme1390I CCNGG 2 cut(s) 175, 692
BmeT110I CYCGRG 1 cut(s) 821
BmgBI CACGTC 1 cut(s) 580
BmgT120I GGNCC 3 cut(s) 134, 310, 512
BmiI GGNNCC 5 cut(s) 152, 237, 387, 808, 939
BmrFI CCNGG 2 cut(s) 175, 692
BmrI ACTGGG 1 cut(s) 710
BmsI GCATC 2 cut(s) 116, 777
BmuI ACTGGG 1 cut(s) 710
BpmI CTGGAG 1 cut(s) 713
BpuEI CTTGAG 1 cut(s) 500
BpuMI CCSGG 1 cut(s) 175
BsaJI CCNNGG 3 cut(s) 137, 192, 231
BsaWI WCCGGW 2 cut(s) 333, 388
BsaXI ACNNNNNCTCC 4 cut(s) 227, 257, 663, 693
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 245, 816
Bse118I RCCGGY 1 cut(s) 333
Bse1I ACTGG 1 cut(s) 705
Bse21I CCTNAGG 1 cut(s) 815
Bse3DI GCAATG 1 cut(s) 740
BseBI CCWGG 1 cut(s) 692
BseDI CCNNGG 3 cut(s) 137, 192, 231
BseGI GGATG 3 cut(s) 726, 805, 810
BseLI CCNNNNNNNGG 3 cut(s) 94, 245, 816
BseMI GCAATG 1 cut(s) 740
BseMII CTCAG 2 cut(s) 213, 444
BseNI ACTGG 1 cut(s) 705
BseRI GAGGAG 2 cut(s) 687, 919
BseSI GKGCMC 1 cut(s) 844
BseXI GCAGC 4 cut(s) 189, 373, 747, 968
BseYI CCCAGC 2 cut(s) 320, 924
BsgI GTGCAG 1 cut(s) 416
Bsh1236I CGCG 4 cut(s) 115, 139, 156, 647
BshFI GGCC 4 cut(s) 136, 311, 513, 690
BshNI GGYRCC 1 cut(s) 806
BshTI ACCGGT 1 cut(s) 333
BsiHKCI CYCGRG 1 cut(s) 821
BsiSI CCGG 4 cut(s) 148, 174, 334, 389
BslFI GGGAC 1 cut(s) 721
BslI CCNNNNNNNGG 3 cut(s) 94, 245, 816
BsmFI GGGAC 1 cut(s) 721
BsmI GAATGC 1 cut(s) 429
BsnI GGCC 4 cut(s) 136, 311, 513, 690
BsoBI CYCGRG 1 cut(s) 821
Bsp1286I GDGCHC 1 cut(s) 844
Bsp1407I TGTACA 2 cut(s) 39, 601
Bsp143I GATC 5 cut(s) 64, 301, 566, 585, 895
Bsp19I CCATGG 1 cut(s) 192
BspACI CCGC 8 cut(s) 137, 139, 154, 197, 210, 218, 383, 647
BspANI GGCC 4 cut(s) 136, 311, 513, 690
BspCNI CTCAG 2 cut(s) 214, 445
BspFNI CGCG 4 cut(s) 115, 139, 156, 647
BspLI GGNNCC 5 cut(s) 152, 237, 387, 808, 939
BspT107I GGYRCC 1 cut(s) 806
BsrDI GCAATG 1 cut(s) 740
BsrFI RCCGGY 1 cut(s) 333
BsrGI TGTACA 2 cut(s) 39, 601
BsrI ACTGG 1 cut(s) 705
BssAI RCCGGY 1 cut(s) 333
BssECI CCNNGG 3 cut(s) 137, 192, 231
BssMI GATC 5 cut(s) 64, 301, 566, 585, 895
BssSI CACGAG 1 cut(s) 547
BssT1I CCWWGG 2 cut(s) 192, 231
Bst2BI CACGAG 1 cut(s) 547
Bst2UI CCWGG 1 cut(s) 692
Bst4CI ACNGT 1 cut(s) 806
Bst6I CTCTTC 2 cut(s) 440, 446
BstAUI TGTACA 2 cut(s) 39, 601
BstC8I GCNNGC 5 cut(s) 105, 366, 399, 511, 733
BstDEI CTNAG 3 cut(s) 222, 453, 815
BstDSI CCRYGG 2 cut(s) 137, 192
BstF5I GGATG 3 cut(s) 726, 805, 810
BstFNI CGCG 4 cut(s) 115, 139, 156, 647
BstHHI GCGC 4 cut(s) 115, 158, 277, 647
BstKTI GATC 5 cut(s) 67, 304, 569, 588, 898
BstMBI GATC 5 cut(s) 64, 301, 566, 585, 895
BstMWI GCNNNNNNNGC 4 cut(s) 119, 153, 317, 358
BstNI CCWGG 1 cut(s) 692
BstNSI RCATGY 1 cut(s) 491
BstSCI CCNGG 2 cut(s) 173, 690
BstSLI GKGCMC 1 cut(s) 844
BstUI CGCG 4 cut(s) 115, 139, 156, 647
BstV1I GCAGC 4 cut(s) 189, 373, 747, 968
BstX2I RGATCY 1 cut(s) 585
BstXI CCANNNNNNTGG 1 cut(s) 320
BstYI RGATCY 1 cut(s) 585
Bsu36I CCTNAGG 1 cut(s) 815
BsuI GTATCC 1 cut(s) 956
BsuRI GGCC 4 cut(s) 136, 311, 513, 690
BtgI CCRYGG 2 cut(s) 137, 192
BtgZI GCGATG 1 cut(s) 506
BtrI CACGTC 1 cut(s) 580
BtsCI GGATG 3 cut(s) 726, 805, 810
Cac8I GCNNGC 5 cut(s) 105, 366, 399, 511, 733
CfoI GCGC 4 cut(s) 115, 158, 277, 647
Cfr10I RCCGGY 1 cut(s) 333
Cfr13I GGNCC 3 cut(s) 134, 310, 512
Cfr42I CCGCGG 1 cut(s) 140
Csp6I GTAC 8 cut(s) 17, 40, 70, 130, 163, 181, 602, 857
CspAI ACCGGT 1 cut(s) 333
CviAII CATG 5 cut(s) 193, 299, 488, 686, 860
CviQI GTAC 8 cut(s) 17, 40, 70, 130, 163, 181, 602, 857
DdeI CTNAG 3 cut(s) 222, 453, 815
DpnI GATC 5 cut(s) 66, 303, 568, 587, 897
DpnII GATC 5 cut(s) 64, 301, 566, 585, 895
Eam1104I CTCTTC 2 cut(s) 440, 446
EarI CTCTTC 2 cut(s) 440, 446
Eco130I CCWWGG 2 cut(s) 192, 231
Eco81I CCTNAGG 1 cut(s) 815
Eco88I CYCGRG 1 cut(s) 821
EcoRII CCWGG 1 cut(s) 690
EcoT14I CCWWGG 2 cut(s) 192, 231
ErhI CCWWGG 2 cut(s) 192, 231
FaeI CATG 5 cut(s) 196, 302, 491, 689, 863
FalI AAGNNNNNCTT 4 cut(s) 867, 899, 972, 1004
FaqI GGGAC 1 cut(s) 721
FatI CATG 5 cut(s) 192, 298, 487, 685, 859
Fnu4HI GCNGC 6 cut(s) 137, 203, 219, 362, 736, 957
FokI GGATG 3 cut(s) 733, 797, 812
Fsp4HI GCNGC 6 cut(s) 137, 203, 219, 362, 736, 957
FspBI CTAG 3 cut(s) 251, 624, 890
GlaI GCGC 4 cut(s) 114, 157, 276, 646
GluI GCNGC 6 cut(s) 137, 203, 219, 362, 736, 957
GsaI CCCAGC 2 cut(s) 324, 928
GsuI CTGGAG 1 cut(s) 713
HaeIII GGCC 4 cut(s) 136, 311, 513, 690
HapII CCGG 4 cut(s) 148, 174, 334, 389
HhaI GCGC 4 cut(s) 115, 158, 277, 647
Hin1II CATG 5 cut(s) 196, 302, 491, 689, 863
Hin6I GCGC 4 cut(s) 113, 156, 275, 645
HinP1I GCGC 4 cut(s) 113, 156, 275, 645
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 292, 607, 852
HpaII CCGG 4 cut(s) 148, 174, 334, 389
HphI GGTGA 3 cut(s) 16, 109, 784
Hpy166II GTNNAC 2 cut(s) 602, 636
Hpy188I TCNGA 1 cut(s) 571
Hpy188III TCNNGA 4 cut(s) 583, 784, 823, 890
Hpy8I GTNNAC 2 cut(s) 602, 636
HpyAV CCTTC 2 cut(s) 769, 863
HpyCH4III ACNGT 1 cut(s) 806
HpyCH4IV ACGT 3 cut(s) 183, 242, 579
HpyCH4V TGCA 6 cut(s) 298, 361, 397, 592, 790, 956
HpyF10VI GCNNNNNNNGC 4 cut(s) 119, 153, 317, 358
HpyF3I CTNAG 3 cut(s) 222, 453, 815
HpySE526I ACGT 3 cut(s) 183, 242, 579
Hsp92II CATG 5 cut(s) 196, 302, 491, 689, 863
HspAI GCGC 4 cut(s) 113, 156, 275, 645
KspI CCGCGG 1 cut(s) 140
Kzo9I GATC 5 cut(s) 64, 301, 566, 585, 895
LmnI GCTCC 5 cut(s) 235, 349, 694, 750, 847
Lsp1109I GCAGC 4 cut(s) 189, 373, 747, 968
LweI GCATC 2 cut(s) 116, 777
MaeI CTAG 3 cut(s) 251, 624, 890
MaeII ACGT 3 cut(s) 183, 242, 579
MalI GATC 5 cut(s) 66, 303, 568, 587, 897
MboI GATC 5 cut(s) 64, 301, 566, 585, 895
MboII GAAGA 4 cut(s) 19, 427, 433, 905
MflI RGATCY 1 cut(s) 585
MhlI GDGCHC 1 cut(s) 844
MluCI AATT 3 cut(s) 10, 44, 827
MlyI GAGTC 1 cut(s) 846
MmeI TCCRAC 1 cut(s) 733
MnlI CCTC 9 cut(s) 112, 449, 452, 665, 749, 825, 830, 891, 897
MroXI GAANNNNTTC 1 cut(s) 779
MseI TTAA 3 cut(s) 90, 654, 1003
MslI CAYNNNNRTG 1 cut(s) 197
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 4 cut(s) 148, 174, 334, 389
MspR9I CCNGG 2 cut(s) 175, 692
Mva1269I GAATGC 1 cut(s) 429
MvaI CCWGG 1 cut(s) 692
MvnI CGCG 4 cut(s) 115, 139, 156, 647
MwoI GCNNNNNNNGC 4 cut(s) 119, 153, 317, 358
NciI CCSGG 1 cut(s) 175
NcoI CCATGG 1 cut(s) 192
NdeII GATC 5 cut(s) 64, 301, 566, 585, 895
NlaIII CATG 5 cut(s) 196, 302, 491, 689, 863
NlaIV GGNNCC 5 cut(s) 152, 237, 387, 808, 939
NmeAIII GCCGAG 2 cut(s) 184, 186
NspI RCATGY 1 cut(s) 491
PaeR7I CTCGAG 1 cut(s) 821
PctI GAATGC 1 cut(s) 429
PdmI GAANNNNTTC 1 cut(s) 779
PfeI GAWTC 2 cut(s) 292, 607
PinAI ACCGGT 1 cut(s) 333
PkrI GCNGC 6 cut(s) 138, 204, 220, 363, 737, 958
PleI GAGTC 1 cut(s) 846
PpsI GAGTC 1 cut(s) 846
PsiI TTATAA 1 cut(s) 978
Psp6I CCWGG 1 cut(s) 690
PspFI CCCAGC 2 cut(s) 320, 924
PspGI CCWGG 1 cut(s) 690
PspN4I GGNNCC 5 cut(s) 152, 237, 387, 808, 939
PspPI GGNCC 3 cut(s) 134, 310, 512
PsuI RGATCY 1 cut(s) 585
RsaI GTAC 8 cut(s) 18, 41, 71, 131, 164, 182, 603, 858
RsaNI GTAC 8 cut(s) 17, 40, 70, 130, 163, 181, 602, 857
RseI CAYNNNNRTG 1 cut(s) 197
SacII CCGCGG 1 cut(s) 140
SaqAI TTAA 3 cut(s) 90, 654, 1003
SatI GCNGC 6 cut(s) 137, 203, 219, 362, 736, 957
Sau3AI GATC 5 cut(s) 64, 301, 566, 585, 895
Sau96I GGNCC 3 cut(s) 134, 310, 512
SchI GAGTC 1 cut(s) 846
ScrFI CCNGG 2 cut(s) 175, 692
SduI GDGCHC 1 cut(s) 844
SfaNI GCATC 2 cut(s) 116, 777
Sfr274I CTCGAG 1 cut(s) 821
Sfr303I CCGCGG 1 cut(s) 140
SgrBI CCGCGG 1 cut(s) 140
SlaI CTCGAG 1 cut(s) 821
SmiMI CAYNNNNRTG 1 cut(s) 197
SmlI CTYRAG 2 cut(s) 479, 821
SmoI CTYRAG 2 cut(s) 479, 821
Sse9I AATT 3 cut(s) 10, 44, 827
SsiI CCGC 8 cut(s) 137, 139, 154, 197, 210, 218, 383, 647
SspMI CTAG 3 cut(s) 251, 624, 890
StyD4I CCNGG 2 cut(s) 173, 690
StyI CCWWGG 2 cut(s) 192, 231
TaaI ACNGT 1 cut(s) 806
TaiI ACGT 3 cut(s) 186, 245, 582
TaqI TCGA 3 cut(s) 63, 327, 822
TasI AATT 3 cut(s) 10, 44, 827
TatI WGTACW 4 cut(s) 39, 69, 162, 601
TauI GCSGC 2 cut(s) 139, 221
TfiI GAWTC 2 cut(s) 292, 607
Tru1I TTAA 3 cut(s) 90, 654, 1003
Tru9I TTAA 3 cut(s) 90, 654, 1003
TseI GCWGC 4 cut(s) 202, 361, 735, 956
TspDTI ATGAA 3 cut(s) 433, 509, 876
TspGWI ACGGA 1 cut(s) 600
XapI RAATTY 1 cut(s) 10
XbaI TCTAGA 1 cut(s) 889
XceI RCATGY 1 cut(s) 491
XhoI CTCGAG 1 cut(s) 821
XmnI GAANNNNTTC 1 cut(s) 779
XspI CTAG 3 cut(s) 251, 624, 890
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.