Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0015153

Physical Location & Seq

Genomic Coordinates Forward (+)

26084042 .. 26085773

Gene Structure 1732 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g25920.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1110 bp

ATGCAGGAAGCCACGTACCACTCCAATTCTGATGAGTTAACAGTTGTTCTCTTTACTCATTCTCCCACTCTCAACCCAGAAAACCAGAAGGAAGAACAAAACTGGAAAGTCCTTTTCATAACTTTATTAGTTCACAATAAACACAGAAAATCATTCGTTTTTCTCAGTATATATTGTCACACAATGGTGAAGCTGGCGTCGGCAAGGGAATTCCGAATGTACGGCCCTCGGCTGAGCCGGAACCGGGCCGAGTACATGAACGCGGGGCTCTACGTGTTTGCCACTGCGGTGCTGCTCGGCGGGTTCGTGGCTCAGCTGTCGAACGAACCCAAGTCAGGCCTAGTCCTGATGCTAATAGCCTTGGCGTTAATTTTGGTGGTGAATTTGCATGATCTGGTGGCACATCTTGCCATGTTCGATTACCGGATGCCATTGATGGAGTTCGATTTGCAGCTCGCCCTCGTCGAGTTTGCTGTCCCGGTGGTTCAGGCTTTGGGAACGGTTCTTTCGTTCCTGGGAATTCTTTTCCTCCTAATTCAGGCGGAGAAAGGATATGGATACTCTAAGCTTGAGAGGCATGCGAAGAACATGCTCATTGCTGGTCCTGTTTTGTGGCTGCTCGGATCGATCCACAATTCATGCCAAATCTACGAGAGGGCAGACGGGCATGTCCAAATACTGCAACAAAGTGTCCACATCCCTTTTCTGATTGGGAGTGTGTTGTTCACAGTTGGTGCAATTCTCAACAGCCGTGAGCAACATGGATTGTTCCTTCATGGCCTACAGCTACTGGGTAGGAATTGGGTGTGGCTGGGGATGGGAGGAAGCCTTTTCTTCCTGATTGGAGGACTAGCAAATGTGGTGAAGGTGTTCAAGATGCAACAAATGGGTGATGGACTGAGGCTCGAGAAACTTCGGGGAGGCGCGCAGGAGAGGCTTGTTCACGAAAGGGAAGGCCAGGTTCCGCTTATACTCGAAGATCAACGGAGGAGATCATCAGTTCGTCACGATGATAAACATCATTTACATCATGTAGAACCAAATCCAAACGTAGCTGCAGAACCAGCTCCTACTCCTTACAAAGACGTTCTTGTTGGCCCGACAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000381 GO:0000932 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006417 GO:0007275 GO:0008150 GO:0009791 GO:0009845 GO:0009889 GO:0010468 GO:0010556 GO:0010608 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0034248 GO:0035770 GO:0036464 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043484 GO:0044424 GO:0044444 GO:0044464 GO:0048024 GO:0048856 GO:0050684 GO:0050789 GO:0050794 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0090351 GO:0097159 GO:1901363 GO:1903311 GO:1990904 GO:2000112

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1 RRM_5

Protein Analysis

370

Amino Acids

41.5

Weight (kDa)

8.45

Isoelectric Point (pI)

40.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015153)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G24130
fragaria_vesca	FvH4_7g31090
malus_domestica	MD01G1215900.v1.1 MD07G1285800.v1.1
pyrus_communis	pycom07g25920
rosa_chinensis	RchiOBHm_Chr1g0380171
rosa_laevigata	RLG00000026324
rosa_multiflora	Rmu_sc0001232.1_g000020 Rmu_sc0016989.1_g000005
rosa_roxburghii	Rroxscaffold_4G00279610
rosa_rugosa	Rorug01G0418500
rosa_samantha	Rh1AG443400 Rh1BG398300 Rh1CG411700 Rh1DG429000
rosa_wichuraiana	Rw1G038500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	668
AccII	CGCG	2 cut(s)	263, 926
AciI	CCGC	5 cut(s)	263, 287, 300, 542, 965
AclWI	GGATC	2 cut(s)	622, 631
AcsI	RAATTY	3 cut(s)	209, 382, 519
AcyI	GRCGYC	1 cut(s)	197
AfaI	GTAC	3 cut(s)	17, 221, 254
AfiI	CCNNNNNNNGG	3 cut(s)	244, 335, 538
AflIII	ACRYGT	1 cut(s)	273
AgsI	TTSAA	1 cut(s)	874
AjnI	CCWGG	2 cut(s)	513, 957
AleI	CACNNNNGTG	2 cut(s)	185, 287
AluBI	AGCT	7 cut(s)	193, 316, 454, 568, 787, 1055, 1067
AluI	AGCT	7 cut(s)	193, 316, 454, 568, 787, 1055, 1067
AlwI	GGATC	2 cut(s)	622, 631
AlwNI	CAGNNNCTG	1 cut(s)	790
Ama87I	CYCGRG	1 cut(s)	905
AoxI	GGCC	6 cut(s)	223, 246, 337, 778, 955, 1096
ApeKI	GCWGC	4 cut(s)	292, 451, 616, 1055
ApoI	RAATTY	3 cut(s)	209, 382, 519
Asp700I	GAANNNNTTC	1 cut(s)	869
AspLEI	GCGC	2 cut(s)	926, 928
AspS9I	GGNCC	4 cut(s)	224, 246, 602, 1097
AsuC2I	CCSGG	2 cut(s)	245, 479
AsuHPI	GGTGA	4 cut(s)	199, 391, 874, 902
AvaI	CYCGRG	1 cut(s)	905
AvaII	GGWCC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	270
BbvI	GCAGC	4 cut(s)	279, 463, 603, 1042
BccI	CCATC	3 cut(s)	430, 811, 887
BceAI	ACGGC	2 cut(s)	238, 735
BcgI	CGANNNNNNTGC	2 cut(s)	571, 605
BciT130I	CCWGG	2 cut(s)	515, 959
BciVI	GTATCC	1 cut(s)	551
BcnI	CCSGG	2 cut(s)	245, 479
BfaI	CTAG	2 cut(s)	341, 851
BfmI	CTRYAG	2 cut(s)	782, 1056
BfuI	GTATCC	1 cut(s)	551
BisI	GCNGC	4 cut(s)	293, 452, 617, 1056
BlpI	GCTNAGC	2 cut(s)	233, 312
BlsI	GCNGC	4 cut(s)	294, 453, 618, 1057
Bme1390I	CCNGG	4 cut(s)	245, 479, 515, 959
Bme18I	GGWCC	1 cut(s)	602
BmeT110I	CYCGRG	1 cut(s)	905
BmgT120I	GGNCC	4 cut(s)	224, 246, 602, 1097
BmiI	GGNNCC	2 cut(s)	242, 963
BmrFI	CCNGG	4 cut(s)	245, 479, 515, 959
BmrI	ACTGGG	1 cut(s)	800
BmsI	GCATC	3 cut(s)	339, 417, 867
BmuI	ACTGGG	1 cut(s)	800
Bpu1102I	GCTNAGC	2 cut(s)	233, 312
BpuEI	CTTGAG	1 cut(s)	590
BpuMI	CCSGG	2 cut(s)	245, 479
Bsa29I	ATCGAT	1 cut(s)	626
BsaAI	YACGTR	2 cut(s)	15, 274
BsaBI	GATNNNNATC	1 cut(s)	1017
BsaHI	GRCGYC	1 cut(s)	197
BsaJI	CCNNGG	3 cut(s)	227, 360, 514
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	46, 76
Bsc4I	CCNNNNNNNGG	3 cut(s)	244, 335, 538
Bse1I	ACTGG	2 cut(s)	107, 795
Bse3DI	GCAATG	1 cut(s)	594
Bse8I	GATNNNNATC	1 cut(s)	1017
BseBI	CCWGG	2 cut(s)	515, 959
BseCI	ATCGAT	1 cut(s)	626
BseDI	CCNNGG	3 cut(s)	227, 360, 514
BseGI	GGATG	3 cut(s)	432, 696, 822
BseJI	GATNNNNATC	1 cut(s)	1017
BseLI	CCNNNNNNNGG	3 cut(s)	244, 335, 538
BseMI	GCAATG	1 cut(s)	594
BseMII	CTCAG	4 cut(s)	178, 224, 326, 890
BseNI	ACTGG	2 cut(s)	107, 795
BsePI	GCGCGC	1 cut(s)	924
BseRI	GAGGAG	1 cut(s)	1003
BseXI	GCAGC	4 cut(s)	279, 463, 603, 1042
BseYI	CCCAGC	1 cut(s)	811
Bsh1236I	CGCG	2 cut(s)	263, 926
BshFI	GGCC	6 cut(s)	225, 248, 339, 780, 957, 1098
BshVI	ATCGAT	1 cut(s)	626
BsiHKCI	CYCGRG	1 cut(s)	905
BsiSI	CCGG	4 cut(s)	238, 244, 424, 479
BslFI	GGGAC	1 cut(s)	461
BslI	CCNNNNNNNGG	3 cut(s)	244, 335, 538
BsmFI	GGGAC	1 cut(s)	461
BsnI	GGCC	6 cut(s)	225, 248, 339, 780, 957, 1098
BsoBI	CYCGRG	1 cut(s)	905
Bsp1286I	GDGCHC	1 cut(s)	270
Bsp143I	GATC	5 cut(s)	391, 623, 627, 979, 992
Bsp1720I	GCTNAGC	2 cut(s)	233, 312
BspACI	CCGC	5 cut(s)	263, 287, 300, 542, 965
BspANI	GGCC	6 cut(s)	225, 248, 339, 780, 957, 1098
BspCNI	CTCAG	4 cut(s)	177, 225, 325, 891
BspDI	ATCGAT	1 cut(s)	626
BspFNI	CGCG	2 cut(s)	263, 926
BspLI	GGNNCC	2 cut(s)	242, 963
BspMAI	CTGCAG	1 cut(s)	1060
BspPI	GGATC	2 cut(s)	622, 631
BsrDI	GCAATG	1 cut(s)	594
BsrI	ACTGG	2 cut(s)	107, 795
BssECI	CCNNGG	3 cut(s)	227, 360, 514
BssHII	GCGCGC	1 cut(s)	924
BssMI	GATC	5 cut(s)	391, 623, 627, 979, 992
BssNI	GRCGYC	1 cut(s)	197
BssT1I	CCWWGG	1 cut(s)	360
Bst2UI	CCWGG	2 cut(s)	515, 959
Bst4CI	ACNGT	3 cut(s)	43, 502, 730
BstACI	GRCGYC	1 cut(s)	197
BstAPI	GCANNNNNTGC	1 cut(s)	407
BstBAI	YACGTR	2 cut(s)	15, 274
BstC8I	GCNNGC	4 cut(s)	195, 456, 579, 926
BstDEI	CTNAG	5 cut(s)	164, 233, 312, 564, 899
BstENI	CCTNNNNNAGG	1 cut(s)	536
BstF5I	GGATG	3 cut(s)	432, 696, 822
BstFNI	CGCG	2 cut(s)	263, 926
BstHHI	GCGC	2 cut(s)	926, 928
BstKTI	GATC	5 cut(s)	394, 626, 630, 982, 995
BstMBI	GATC	5 cut(s)	391, 623, 627, 979, 992
BstMWI	GCNNNNNNNGC	4 cut(s)	407, 574, 934, 1064
BstNI	CCWGG	2 cut(s)	515, 959
BstNSI	RCATGY	3 cut(s)	581, 592, 671
BstSCI	CCNGG	4 cut(s)	243, 477, 513, 957
BstSFI	CTRYAG	2 cut(s)	782, 1056
BstUI	CGCG	2 cut(s)	263, 926
BstV1I	GCAGC	4 cut(s)	279, 463, 603, 1042
Bsu15I	ATCGAT	1 cut(s)	626
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	6 cut(s)	225, 248, 339, 780, 957, 1098
BsuTUI	ATCGAT	1 cut(s)	626
BtsCI	GGATG	3 cut(s)	432, 696, 822
BtsI	GCAGTG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	4 cut(s)	195, 456, 579, 926
CaiI	CAGNNNCTG	1 cut(s)	790
CfoI	GCGC	2 cut(s)	926, 928
Cfr13I	GGNCC	4 cut(s)	224, 246, 602, 1097
ClaI	ATCGAT	1 cut(s)	626
CseI	GACGC	1 cut(s)	186
Csp6I	GTAC	3 cut(s)	16, 220, 253
CviQI	GTAC	3 cut(s)	16, 220, 253
DdeI	CTNAG	5 cut(s)	164, 233, 312, 564, 899
DpnI	GATC	5 cut(s)	393, 625, 629, 981, 994
DpnII	GATC	5 cut(s)	391, 623, 627, 979, 992
DrdI	GACNNNNNNGTC	1 cut(s)	668
DseDI	GACNNNNNNGTC	1 cut(s)	668
EciI	GGCGGA	1 cut(s)	557
Eco130I	CCWWGG	1 cut(s)	360
Eco147I	AGGCCT	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	270
Eco47I	GGWCC	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	905
EcoNI	CCTNNNNNAGG	1 cut(s)	536
EcoRI	GAATTC	2 cut(s)	209, 519
EcoRII	CCWGG	2 cut(s)	513, 957
EcoT14I	CCWWGG	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	270
ErhI	CCWWGG	1 cut(s)	360
FalI	AAGNNNNNCTT	2 cut(s)	1074, 1106
FaqI	GGGAC	1 cut(s)	461
FauI	CCCGC	2 cut(s)	256, 293
Fnu4HI	GCNGC	4 cut(s)	293, 452, 617, 1056
FokI	GGATG	3 cut(s)	439, 683, 829
FriOI	GRGCYC	1 cut(s)	270
Fsp4HI	GCNGC	4 cut(s)	293, 452, 617, 1056
FspBI	CTAG	2 cut(s)	341, 851
GlaI	GCGC	2 cut(s)	925, 927
GluI	GCNGC	4 cut(s)	293, 452, 617, 1056
GsaI	CCCAGC	1 cut(s)	815
HaeIII	GGCC	6 cut(s)	225, 248, 339, 780, 957, 1098
HapII	CCGG	4 cut(s)	238, 244, 424, 479
HgaI	GACGC	1 cut(s)	186
HhaI	GCGC	2 cut(s)	926, 928
Hin1I	GRCGYC	1 cut(s)	197
Hin6I	GCGC	2 cut(s)	924, 926
HinP1I	GCGC	2 cut(s)	924, 926
HincII	GTYRAC	1 cut(s)	39
HindII	GTYRAC	1 cut(s)	39
HindIII	AAGCTT	1 cut(s)	566
HpaI	GTTAAC	1 cut(s)	39
HpaII	CCGG	4 cut(s)	238, 244, 424, 479
HphI	GGTGA	4 cut(s)	199, 391, 874, 902
Hpy166II	GTNNAC	5 cut(s)	39, 133, 694, 726, 943
Hpy188I	TCNGA	4 cut(s)	31, 215, 623, 708
Hpy188III	TCNNGA	6 cut(s)	346, 838, 874, 907, 944, 1007
Hpy8I	GTNNAC	5 cut(s)	39, 133, 694, 726, 943
Hpy99I	CGWCG	2 cut(s)	202, 467
HpyAV	CCTTC	4 cut(s)	82, 782, 859, 947
HpyCH4III	ACNGT	3 cut(s)	43, 502, 730
HpyCH4IV	ACGT	4 cut(s)	14, 273, 1050, 1086
HpyCH4V	TGCA	7 cut(s)	4, 388, 451, 682, 737, 880, 1058
HpyF10VI	GCNNNNNNNGC	4 cut(s)	407, 574, 934, 1064
HpyF3I	CTNAG	5 cut(s)	164, 233, 312, 564, 899
HpySE526I	ACGT	4 cut(s)	14, 273, 1050, 1086
Hsp92I	GRCGYC	1 cut(s)	197
HspAI	GCGC	2 cut(s)	924, 926
KspAI	GTTAAC	1 cut(s)	39
Kzo9I	GATC	5 cut(s)	391, 623, 627, 979, 992
LmnI	GCTCC	1 cut(s)	1072
Lsp1109I	GCAGC	4 cut(s)	279, 463, 603, 1042
LweI	GCATC	3 cut(s)	339, 417, 867
MaeI	CTAG	2 cut(s)	341, 851
MaeII	ACGT	4 cut(s)	14, 273, 1050, 1086
MaeIII	GTNAC	2 cut(s)	176, 1004
MalI	GATC	5 cut(s)	393, 625, 629, 981, 994
MboI	GATC	5 cut(s)	391, 623, 627, 979, 992
MboII	GAAGA	4 cut(s)	104, 595, 826, 989
MhlI	GDGCHC	1 cut(s)	270
MluCI	AATT	9 cut(s)	25, 209, 369, 382, 519, 534, 634, 738, 799
MroXI	GAANNNNTTC	1 cut(s)	869
MseI	TTAA	2 cut(s)	38, 368
MslI	CAYNNNNRTG	2 cut(s)	185, 287
MspA1I	CMGCKG	1 cut(s)	316
MspI	CCGG	4 cut(s)	238, 244, 424, 479
MspR9I	CCNGG	4 cut(s)	245, 479, 515, 959
MvaI	CCWGG	2 cut(s)	515, 959
MvnI	CGCG	2 cut(s)	263, 926
MwoI	GCNNNNNNNGC	4 cut(s)	407, 574, 934, 1064
NciI	CCSGG	2 cut(s)	245, 479
NdeII	GATC	5 cut(s)	391, 623, 627, 979, 992
NlaIV	GGNNCC	2 cut(s)	242, 963
NmeAIII	GCCGAG	3 cut(s)	208, 274, 276
NmuCI	GTSAC	2 cut(s)	176, 1004
NspI	RCATGY	3 cut(s)	581, 592, 671
OliI	CACNNNNGTG	2 cut(s)	185, 287
PaeI	GCATGC	1 cut(s)	581
PaeR7I	CTCGAG	1 cut(s)	905
PauI	GCGCGC	1 cut(s)	924
PceI	AGGCCT	1 cut(s)	339
PcsI	WCGNNNNNNNCGW	3 cut(s)	303, 462, 506
PdmI	GAANNNNTTC	1 cut(s)	869
PkrI	GCNGC	4 cut(s)	294, 453, 618, 1057
Ppu21I	YACGTR	2 cut(s)	15, 274
Psp6I	CCWGG	2 cut(s)	513, 957
PspFI	CCCAGC	1 cut(s)	811
PspGI	CCWGG	2 cut(s)	513, 957
PspN4I	GGNNCC	2 cut(s)	242, 963
PspPI	GGNCC	4 cut(s)	224, 246, 602, 1097
PstI	CTGCAG	1 cut(s)	1060
PstNI	CAGNNNCTG	1 cut(s)	790
PteI	GCGCGC	1 cut(s)	924
PvuII	CAGCTG	1 cut(s)	316
RsaI	GTAC	3 cut(s)	17, 221, 254
RsaNI	GTAC	3 cut(s)	16, 220, 253
RseI	CAYNNNNRTG	2 cut(s)	185, 287
SaqAI	TTAA	2 cut(s)	38, 368
SatI	GCNGC	4 cut(s)	293, 452, 617, 1056
Sau3AI	GATC	5 cut(s)	391, 623, 627, 979, 992
Sau96I	GGNCC	4 cut(s)	224, 246, 602, 1097
ScrFI	CCNGG	4 cut(s)	245, 479, 515, 959
SduI	GDGCHC	1 cut(s)	270
SfaNI	GCATC	3 cut(s)	339, 417, 867
SfcI	CTRYAG	2 cut(s)	782, 1056
Sfr274I	CTCGAG	1 cut(s)	905
SinI	GGWCC	1 cut(s)	602
SlaI	CTCGAG	1 cut(s)	905
SmiMI	CAYNNNNRTG	2 cut(s)	185, 287
SmlI	CTYRAG	2 cut(s)	569, 905
SmoI	CTYRAG	2 cut(s)	569, 905
SphI	GCATGC	1 cut(s)	581
Sse9I	AATT	9 cut(s)	25, 209, 369, 382, 519, 534, 634, 738, 799
SseBI	AGGCCT	1 cut(s)	339
SsiI	CCGC	5 cut(s)	263, 287, 300, 542, 965
SspMI	CTAG	2 cut(s)	341, 851
StuI	AGGCCT	1 cut(s)	339
StyD4I	CCNGG	4 cut(s)	243, 477, 513, 957
StyI	CCWWGG	1 cut(s)	360
TaaI	ACNGT	3 cut(s)	43, 502, 730
TaiI	ACGT	4 cut(s)	17, 276, 1053, 1089
TaqI	TCGA	7 cut(s)	320, 417, 444, 465, 626, 906, 975
TasI	AATT	9 cut(s)	25, 209, 369, 382, 519, 534, 634, 738, 799
TatI	WGTACW	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	38, 368
Tru9I	TTAA	2 cut(s)	38, 368
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	2 cut(s)	176, 1004
TseI	GCWGC	4 cut(s)	292, 451, 616, 1055
Tsp45I	GTSAC	2 cut(s)	176, 1004
TspDTI	ATGAA	4 cut(s)	106, 272, 627, 764
TspGWI	ACGGA	1 cut(s)	1000
TspRI	CASTG	1 cut(s)	289
VpaK11BI	GGWCC	1 cut(s)	602
XagI	CCTNNNNNAGG	1 cut(s)	536
XapI	RAATTY	3 cut(s)	209, 382, 519
XceI	RCATGY	3 cut(s)	581, 592, 671
XhoI	CTCGAG	1 cut(s)	905
XmnI	GAANNNNTTC	1 cut(s)	869
XspI	CTAG	2 cut(s)	341, 851

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.