AT5G24170

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0013960
Physical Location & Seq
Reverse (-)
8189461 .. 8191459
1999 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G24170.1

Sequence Viewer

Length: 492 bp
ATGCAGAAGCTCAACGACATCTTCTCCGGTGGAGGAGACGGCGACGGAACAACCGATAGTTTCCTTGAAGATGGATCGGAGGGTCTCTGTGCTCTCTCCACCACCCAGAGAATGTACGGATTCGCCGCGTCTTTAGCCACTGGTCTGCTACTTATGTTCCTGTCTATGATTGTATTTGGGATCCCCATCAAATTTGCACTGCTCTTCACATTTGGAAATGTTCTAGCTATTGGAAGCACAGCTTTCCTCATGGGACCTGAGCAACAGATGAGTATGATGTTTGACCCTGTTCGTTTCTTAGCTACATCCATTTATATCGGATGTGTCGTTGTTGCACTCATTTGCGCTCTCCTGATCCATAGCAAAATCTTAACGGTCCTTGCGATCTTATGTGAGATTTGTGCACTGATATGGTACAGCCTCAGTTATATTCCATTCGCACGGAGAATGGTCTCTGAAATAATGATCCGTCTTTGTGACACTGAGCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

163

Amino Acids

17.75

Weight (kDa)

4.61

Isoelectric Point (pI)

31.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 38 - 145 8.5e-31 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24170 AT5G24170
fragaria_vesca FvH4_7g31760
malus_domestica MD01G1219600.v1.1
prunus_persica Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1
pyrus_communis pycom01g22940
rosa_chinensis RchiOBHm_Chr1g0380991
rosa_laevigata RLG00000026254
rosa_roxburghii Rroxscaffold_4G00278880
rosa_rugosa Rorug01G0426200
rosa_samantha Rh1BG406000 Rh1CG420000 Rh1DG436500
rosa_wichuraiana Rw1G039210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 128
AciI CCGC 1 cut(s) 126
AclWI GGATC 5 cut(s) 82, 175, 188, 349, 460
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 2 cut(s) 116, 416
AgsI TTSAA 1 cut(s) 68
AluBI AGCT 5 cut(s) 10, 227, 242, 302, 487
AluI AGCT 5 cut(s) 10, 227, 242, 302, 487
Alw21I GWGCWC 2 cut(s) 94, 406
Alw26I GTCTC 3 cut(s) 30, 89, 457
Alw44I GTGCAC 1 cut(s) 402
AlwI GGATC 5 cut(s) 82, 175, 188, 349, 460
ApaLI GTGCAC 1 cut(s) 402
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 347
AspS9I GGNCC 2 cut(s) 254, 376
AvaII GGWCC 2 cut(s) 254, 376
BaeGI GKGCMC 1 cut(s) 406
BamHI GGATCC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 94, 406
BccI CCATC 2 cut(s) 65, 194
BceAI ACGGC 1 cut(s) 55
BcoDI GTCTC 3 cut(s) 30, 89, 457
BfaI CTAG 1 cut(s) 224
BfmI CTRYAG 1 cut(s) 488
BisI GCNGC 1 cut(s) 126
BlsI GCNGC 1 cut(s) 127
Bme18I GGWCC 2 cut(s) 254, 376
BmgT120I GGNCC 2 cut(s) 254, 376
BmiI GGNNCC 2 cut(s) 182, 255
Bpu10I CCTNAGC 1 cut(s) 258
BsaBI GATNNNNATC 1 cut(s) 185
BsaI GGTCTC 2 cut(s) 89, 457
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 2 cut(s) 8, 38
Bse1I ACTGG 1 cut(s) 145
Bse8I GATNNNNATC 1 cut(s) 185
BseGI GGATG 2 cut(s) 305, 326
BseJI GATNNNNATC 1 cut(s) 185
BseMII CTCAG 3 cut(s) 249, 436, 474
BseNI ACTGG 1 cut(s) 145
BseRI GAGGAG 1 cut(s) 48
BseSI GKGCMC 1 cut(s) 406
Bsh1236I CGCG 1 cut(s) 128
BsiHKAI GWGCWC 2 cut(s) 94, 406
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 267
BsmAI GTCTC 3 cut(s) 30, 89, 457
BsmBI CGTCTC 1 cut(s) 30
BsmFI GGGAC 1 cut(s) 267
Bso31I GGTCTC 2 cut(s) 89, 457
Bsp1286I GDGCHC 2 cut(s) 94, 406
Bsp143I GATC 5 cut(s) 74, 180, 354, 384, 465
BspACI CCGC 1 cut(s) 126
BspCNI CTCAG 3 cut(s) 250, 435, 475
BspFNI CGCG 1 cut(s) 128
BspLI GGNNCC 2 cut(s) 182, 255
BspPI GGATC 5 cut(s) 82, 175, 188, 349, 460
BspQI GCTCTTC 1 cut(s) 209
BspTNI GGTCTC 2 cut(s) 89, 457
BsrI ACTGG 1 cut(s) 145
BssMI GATC 5 cut(s) 74, 180, 354, 384, 465
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 209
BstDEI CTNAG 4 cut(s) 258, 298, 422, 483
BstF5I GGATG 2 cut(s) 305, 326
BstFNI CGCG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 5 cut(s) 77, 183, 357, 387, 468
BstMAI GTCTC 3 cut(s) 30, 89, 457
BstMBI GATC 5 cut(s) 74, 180, 354, 384, 465
BstMWI GCNNNNNNNGC 1 cut(s) 134
BstSFI CTRYAG 1 cut(s) 488
BstSLI GKGCMC 1 cut(s) 406
BstUI CGCG 1 cut(s) 128
BstX2I RGATCY 1 cut(s) 180
BstYI RGATCY 1 cut(s) 180
BtsCI GGATG 2 cut(s) 305, 326
BtsI GCAGTG 1 cut(s) 197
BtsIMutI CAGTG 4 cut(s) 138, 197, 404, 480
CfoI GCGC 1 cut(s) 347
Cfr13I GGNCC 2 cut(s) 254, 376
CseI GACGC 1 cut(s) 117
Csp6I GTAC 2 cut(s) 115, 415
CviAII CATG 1 cut(s) 250
CviJI RGCY 7 cut(s) 10, 137, 227, 242, 302, 420, 487
CviKI_1 RGCY 7 cut(s) 10, 137, 227, 242, 302, 420, 487
CviQI GTAC 2 cut(s) 115, 415
DdeI CTNAG 4 cut(s) 258, 298, 422, 483
DpnI GATC 5 cut(s) 76, 182, 356, 386, 467
DpnII GATC 5 cut(s) 74, 180, 354, 384, 465
Eam1104I CTCTTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 209
Eco31I GGTCTC 2 cut(s) 89, 457
Eco47I GGWCC 2 cut(s) 254, 376
EcoO109I RGGNCCY 1 cut(s) 254
Esp3I CGTCTC 1 cut(s) 30
FaeI CATG 1 cut(s) 253
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FaqI GGGAC 1 cut(s) 267
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 126
FokI GGATG 2 cut(s) 292, 333
Fsp4HI GCNGC 1 cut(s) 126
FspBI CTAG 1 cut(s) 224
GlaI GCGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 126
HapII CCGG 1 cut(s) 27
HgaI GACGC 1 cut(s) 117
HhaI GCGC 1 cut(s) 347
Hin1II CATG 1 cut(s) 253
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HinfI GANTC 1 cut(s) 120
HpaII CCGG 1 cut(s) 27
Hpy166II GTNNAC 1 cut(s) 404
Hpy188I TCNGA 3 cut(s) 79, 320, 457
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 404
Hpy99I CGWCG 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4V TGCA 4 cut(s) 4, 197, 335, 404
HpyF10VI GCNNNNNNNGC 1 cut(s) 134
HpyF3I CTNAG 4 cut(s) 258, 298, 422, 483
Hsp92II CATG 1 cut(s) 253
HspAI GCGC 1 cut(s) 345
Kzo9I GATC 5 cut(s) 74, 180, 354, 384, 465
LguI GCTCTTC 1 cut(s) 209
LpnPI CCDG 7 cut(s) 40, 119, 126, 173, 270, 300, 365
MaeI CTAG 1 cut(s) 224
MaeIII GTNAC 1 cut(s) 476
MalI GATC 5 cut(s) 76, 182, 356, 386, 467
MboI GATC 5 cut(s) 74, 180, 354, 384, 465
MboII GAAGA 3 cut(s) 13, 80, 196
MflI RGATCY 1 cut(s) 180
MhlI GDGCHC 2 cut(s) 94, 406
MluCI AATT 1 cut(s) 191
MnlI CCTC 4 cut(s) 26, 73, 257, 431
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 409
MspI CCGG 1 cut(s) 27
MvnI CGCG 1 cut(s) 128
MwoI GCNNNNNNNGC 1 cut(s) 134
NdeII GATC 5 cut(s) 74, 180, 354, 384, 465
NlaIII CATG 1 cut(s) 253
NlaIV GGNNCC 2 cut(s) 182, 255
NmuCI GTSAC 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 209
PcsI WCGNNNNNNNCGW 3 cut(s) 51, 324, 380
PfeI GAWTC 1 cut(s) 120
PkrI GCNGC 1 cut(s) 127
PpuMI RGGWCCY 1 cut(s) 254
Psp5II RGGWCCY 1 cut(s) 254
PspN4I GGNNCC 2 cut(s) 182, 255
PspPI GGNCC 2 cut(s) 254, 376
PspPPI RGGWCCY 1 cut(s) 254
PsuI RGATCY 1 cut(s) 180
RsaI GTAC 2 cut(s) 116, 416
RsaNI GTAC 2 cut(s) 115, 415
RseI CAYNNNNRTG 1 cut(s) 409
SapI GCTCTTC 1 cut(s) 209
SaqAI TTAA 1 cut(s) 371
SatI GCNGC 1 cut(s) 126
Sau3AI GATC 5 cut(s) 74, 180, 354, 384, 465
Sau96I GGNCC 2 cut(s) 254, 376
SduI GDGCHC 2 cut(s) 94, 406
SetI ASST 6 cut(s) 12, 229, 244, 259, 304, 489
SfcI CTRYAG 1 cut(s) 488
SinI GGWCC 2 cut(s) 254, 376
SmiMI CAYNNNNRTG 1 cut(s) 409
Sse9I AATT 1 cut(s) 191
SsiI CCGC 1 cut(s) 126
SspMI CTAG 1 cut(s) 224
TaaI ACNGT 1 cut(s) 376
TasI AATT 1 cut(s) 191
TauI GCSGC 1 cut(s) 128
TfiI GAWTC 1 cut(s) 120
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TscAI CASTG 4 cut(s) 145, 204, 411, 487
TseFI GTSAC 1 cut(s) 476
Tsp45I GTSAC 1 cut(s) 476
TspGWI ACGGA 4 cut(s) 60, 132, 457, 458
TspRI CASTG 4 cut(s) 145, 204, 411, 487
VneI GTGCAC 1 cut(s) 402
VpaK11BI GGWCC 2 cut(s) 254, 376
XapI RAATTY 1 cut(s) 191
XspI CTAG 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.