FvH4_7g31760

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0013960
Physical Location & Seq
Forward (+)
22919063 .. 22921598
2536 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g31760.t1

Sequence Viewer

Length: 492 bp
ATGTGGGGAAAGCTGAACCAATCTATGCTTGGGAACAACGAAGAGCAGGGTGAAGAGGGTTTCTTTGATGAAGAATCCGAAGGCTTGTGTTCTCTGTCTGCTACTCAGAGAATGTATGCTTTTGGAGGTTGTTTCCTGGTTGGGATGGCTTGTATGTTCCTGTCGATGATCGTCTTTGCCAAACCCATCAAATTTGCCATTTTGTTTACCTTTGGCAATTTGTTGGCGGTAGGAAGTACAGCTTTCCTCTTTGGCCCTGCCCAACAAATGAGAATGATGTTTGACACGGTCCGAATCTATGCCACAGCTATTTACCTTGGTTGTGTTGTTCTAGCACTCATCTGTGCTCTCTTGATTCAAAGCAAAGTTTTGACACTAATTGCAATGATATGTGAGCTCTGCGCCCTTATTTGGTACAGTCTGAGTTATATTCCTTTTGCTCGAAGTATGGTGTCACAATTGATGATTCGTTTATGCGACACGGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

164

Amino Acids

18.13

Weight (kDa)

4.85

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 38 - 145 5e-33 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24170 AT5G24170
fragaria_vesca FvH4_7g31760
malus_domestica MD01G1219600.v1.1
prunus_persica Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1
pyrus_communis pycom01g22940
rosa_chinensis RchiOBHm_Chr1g0380991
rosa_laevigata RLG00000026254
rosa_roxburghii Rroxscaffold_4G00278880
rosa_rugosa Rorug01G0426200
rosa_samantha Rh1BG406000 Rh1CG420000 Rh1DG436500
rosa_wichuraiana Rw1G039210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcsI RAATTY 1 cut(s) 191
AfaI GTAC 2 cut(s) 238, 416
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 1 cut(s) 359
AjnI CCWGG 1 cut(s) 135
AluBI AGCT 5 cut(s) 13, 242, 308, 397, 487
AluI AGCT 5 cut(s) 13, 242, 308, 397, 487
Alw21I GWGCWC 2 cut(s) 349, 399
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 191
AspLEI GCGC 1 cut(s) 404
AspS9I GGNCC 2 cut(s) 254, 289
AsuHPI GGTGA 1 cut(s) 62
AvaII GGWCC 1 cut(s) 289
BanII GRGCYC 1 cut(s) 399
Bbv12I GWGCWC 2 cut(s) 349, 399
BccI CCATC 2 cut(s) 139, 194
BciT130I CCWGG 1 cut(s) 137
BfaI CTAG 1 cut(s) 332
Bme1390I CCNGG 1 cut(s) 137
Bme18I GGWCC 1 cut(s) 289
BmgT120I GGNCC 2 cut(s) 254, 289
BmrFI CCNGG 1 cut(s) 137
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 390
BseBI CCWGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 1 cut(s) 150
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 119, 413
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 2 cut(s) 349, 399
BslI CCNNNNNNNGG 1 cut(s) 411
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 349, 399
Bsp143I GATC 1 cut(s) 168
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 118, 414
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 1 cut(s) 390
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 168
BssT1I CCWWGG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 137
Bst4CI ACNGT 2 cut(s) 289, 419
Bst6I CTCTTC 2 cut(s) 36, 48
BstDEI CTNAG 2 cut(s) 105, 422
BstF5I GGATG 1 cut(s) 150
BstHHI GCGC 1 cut(s) 404
BstKTI GATC 1 cut(s) 171
BstMBI GATC 1 cut(s) 168
BstNI CCWGG 1 cut(s) 137
BstSCI CCNGG 1 cut(s) 135
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 1 cut(s) 150
CfoI GCGC 1 cut(s) 404
Cfr13I GGNCC 2 cut(s) 254, 289
CpoI CGGWCCG 1 cut(s) 289
Csp6I GTAC 2 cut(s) 237, 415
CspI CGGWCCG 1 cut(s) 289
CviJI RGCY 8 cut(s) 13, 84, 149, 242, 255, 308, 397, 487
CviKI_1 RGCY 8 cut(s) 13, 84, 149, 242, 255, 308, 397, 487
CviQI GTAC 2 cut(s) 237, 415
DdeI CTNAG 2 cut(s) 105, 422
DpnI GATC 1 cut(s) 170
DpnII GATC 1 cut(s) 168
Eam1104I CTCTTC 2 cut(s) 36, 48
EarI CTCTTC 2 cut(s) 36, 48
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 1 cut(s) 289
Eco53kI GAGCTC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 135
EcoT14I CCWWGG 1 cut(s) 316
EcoT38I GRGCYC 1 cut(s) 399
ErhI CCWWGG 1 cut(s) 316
FaiI YATR 8 cut(s) 26, 117, 155, 300, 391, 429, 449, 475
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FokI GGATG 1 cut(s) 157
FriOI GRGCYC 1 cut(s) 399
FspBI CTAG 1 cut(s) 332
GlaI GCGC 1 cut(s) 403
HaeIII GGCC 1 cut(s) 255
HhaI GCGC 1 cut(s) 404
Hin6I GCGC 1 cut(s) 402
HinP1I GCGC 1 cut(s) 402
HinfI GANTC 4 cut(s) 74, 294, 355, 466
HphI GGTGA 1 cut(s) 62
Hpy166II GTNNAC 1 cut(s) 207
Hpy188I TCNGA 4 cut(s) 79, 108, 293, 423
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 1 cut(s) 207
HpyAV CCTTC 1 cut(s) 74
HpyCH4III ACNGT 2 cut(s) 289, 419
HpyCH4V TGCA 1 cut(s) 383
HpyF3I CTNAG 2 cut(s) 105, 422
HspAI GCGC 1 cut(s) 402
Kzo9I GATC 1 cut(s) 168
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 1 cut(s) 484
LpnPI CCDG 5 cut(s) 32, 122, 149, 173, 270
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 453
MalI GATC 1 cut(s) 170
MboI GATC 1 cut(s) 168
MboII GAAGA 3 cut(s) 53, 65, 83
MfeI CAATTG 1 cut(s) 458
MhlI GDGCHC 2 cut(s) 349, 399
MluCI AATT 4 cut(s) 191, 217, 378, 458
MnlI CCTC 3 cut(s) 49, 119, 257
MspR9I CCNGG 1 cut(s) 137
MunI CAATTG 1 cut(s) 458
MvaI CCWGG 1 cut(s) 137
NdeII GATC 1 cut(s) 168
NmuCI GTSAC 1 cut(s) 453
PciSI GCTCTTC 1 cut(s) 36
PfeI GAWTC 4 cut(s) 74, 294, 355, 466
PflFI GACNNNGTC 1 cut(s) 287
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 135
PspGI CCWGG 1 cut(s) 135
PspPI GGNCC 2 cut(s) 254, 289
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 2 cut(s) 238, 416
RsaNI GTAC 2 cut(s) 237, 415
Rsr2I CGGWCCG 1 cut(s) 289
RsrII CGGWCCG 1 cut(s) 289
SacI GAGCTC 1 cut(s) 399
SapI GCTCTTC 1 cut(s) 36
Sau3AI GATC 1 cut(s) 168
Sau96I GGNCC 2 cut(s) 254, 289
ScrFI CCNGG 1 cut(s) 137
SduI GDGCHC 2 cut(s) 349, 399
SetI ASST 8 cut(s) 15, 130, 212, 244, 310, 318, 399, 489
SinI GGWCC 1 cut(s) 289
Sse9I AATT 4 cut(s) 191, 217, 378, 458
SsiI CCGC 1 cut(s) 227
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 289, 419
TaqI TCGA 2 cut(s) 164, 442
TasI AATT 4 cut(s) 191, 217, 378, 458
TatI WGTACW 1 cut(s) 236
TfiI GAWTC 4 cut(s) 74, 294, 355, 466
TseFI GTSAC 1 cut(s) 453
Tsp45I GTSAC 1 cut(s) 453
TspDTI ATGAA 1 cut(s) 84
Tth111I GACNNNGTC 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 289
XapI RAATTY 1 cut(s) 191
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.