Rh1CG420000

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0013960
Physical Location & Seq
Forward (+)
67973846 .. 67976178
2333 bp
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UTR
Exon/CDS
Intron
Rh1CG420000.1

Sequence Viewer

Length: 492 bp
ATGTGGGGGAAGCTAAACCAGTCTATGCTTGGGGGTAACGAAGAGGGTGAACAGGGTTTCTTGGATGAAGAATCTGAAGGCTTGTGTTCTTCTCTATCTGCTACTCAGAGAATGTATGCGTTTGGAGGTTGTTTGTTGGCTGGGATGGTCTGTATGTTCTTGTCGATGATTGTATTTGCCAAACCCATCAAATTTGCCATTTTGTTCACCTTTGGCAATTTGTTGGCGGTTGGAAGCACAGCTTTCCTCTTTGGCCCTGCCCAACAAATACGAATGATGTTTGACACAGTCCGAATTTATGCAACAGCTATTTACCTTGGATGTGTTGTTTTAGCACTCGTCTGTGCTCTCTTGATTCAAAGCAAAGTTTTGACACTAATTGCAATGATATGTGAGATCTGTGCCCTTATTTGGTACAGTCTGAGTTATATTCCTTTTGCTCGAAGAATGGTTTCAGAATTGATGATTCGTTTATGCGACACCGAGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

163

Amino Acids

18.01

Weight (kDa)

5.08

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 38 - 145 2.1e-33 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24170 AT5G24170
fragaria_vesca FvH4_7g31760
malus_domestica MD01G1219600.v1.1
prunus_persica Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1
pyrus_communis pycom01g22940
rosa_chinensis RchiOBHm_Chr1g0380991
rosa_laevigata RLG00000026254
rosa_roxburghii Rroxscaffold_4G00278880
rosa_rugosa Rorug01G0426200
rosa_samantha Rh1BG406000 Rh1CG420000 Rh1DG436500
rosa_wichuraiana Rw1G039210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 227
AcsI RAATTY 2 cut(s) 191, 294
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 416
AfiI CCNNNNNNNGG 1 cut(s) 411
AgsI TTSAA 1 cut(s) 359
AluBI AGCT 4 cut(s) 13, 242, 308, 487
AluI AGCT 4 cut(s) 13, 242, 308, 487
Alw21I GWGCWC 1 cut(s) 349
AoxI GGCC 1 cut(s) 253
ApoI RAATTY 2 cut(s) 191, 294
Asp700I GAANNNNTTC 1 cut(s) 451
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 59, 199
BaeGI GKGCMC 1 cut(s) 406
Bbv12I GWGCWC 1 cut(s) 349
BccI CCATC 2 cut(s) 139, 194
BglII AGATCT 1 cut(s) 396
BmgT120I GGNCC 1 cut(s) 254
BsaJI CCNNGG 1 cut(s) 316
Bsc4I CCNNNNNNNGG 1 cut(s) 411
Bse1I ACTGG 1 cut(s) 19
Bse3DI GCAATG 1 cut(s) 390
BseDI CCNNGG 1 cut(s) 316
BseGI GGATG 3 cut(s) 70, 150, 326
BseLI CCNNNNNNNGG 1 cut(s) 411
BseMI GCAATG 1 cut(s) 390
BseMII CTCAG 2 cut(s) 119, 413
BseNI ACTGG 1 cut(s) 19
BseSI GKGCMC 1 cut(s) 406
BseYI CCCAGC 1 cut(s) 140
BshFI GGCC 1 cut(s) 255
BsiHKAI GWGCWC 1 cut(s) 349
BslI CCNNNNNNNGG 1 cut(s) 411
BsnI GGCC 1 cut(s) 255
Bsp1286I GDGCHC 2 cut(s) 349, 406
Bsp143I GATC 1 cut(s) 396
BspACI CCGC 1 cut(s) 227
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 2 cut(s) 118, 414
BsrDI GCAATG 1 cut(s) 390
BsrI ACTGG 1 cut(s) 19
BssECI CCNNGG 1 cut(s) 316
BssMI GATC 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 316
Bst4CI ACNGT 2 cut(s) 289, 419
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 105, 422
BstF5I GGATG 3 cut(s) 70, 150, 326
BstKTI GATC 1 cut(s) 399
BstMBI GATC 1 cut(s) 396
BstSLI GKGCMC 1 cut(s) 406
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
BsuRI GGCC 1 cut(s) 255
BtsCI GGATG 3 cut(s) 70, 150, 326
Cfr13I GGNCC 1 cut(s) 254
Csp6I GTAC 1 cut(s) 415
CviJI RGCY 7 cut(s) 13, 81, 140, 242, 255, 308, 487
CviKI_1 RGCY 7 cut(s) 13, 81, 140, 242, 255, 308, 487
CviQI GTAC 1 cut(s) 415
DdeI CTNAG 2 cut(s) 105, 422
DpnI GATC 1 cut(s) 398
DpnII GATC 1 cut(s) 396
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 316
Eco57I CTGAAG 1 cut(s) 96
EcoT14I CCWWGG 1 cut(s) 316
ErhI CCWWGG 1 cut(s) 316
FaiI YATR 7 cut(s) 26, 117, 155, 300, 391, 429, 475
FalI AAGNNNNNCTT 2 cut(s) 226, 258
FokI GGATG 3 cut(s) 77, 157, 333
GsaI CCCAGC 1 cut(s) 144
HaeIII GGCC 1 cut(s) 255
HinfI GANTC 3 cut(s) 71, 355, 466
HphI GGTGA 2 cut(s) 59, 199
Hpy166II GTNNAC 2 cut(s) 50, 207
Hpy188I TCNGA 5 cut(s) 76, 108, 293, 423, 457
Hpy188III TCNNGA 1 cut(s) 352
Hpy8I GTNNAC 2 cut(s) 50, 207
HpyAV CCTTC 1 cut(s) 71
HpyCH4III ACNGT 2 cut(s) 289, 419
HpyCH4V TGCA 2 cut(s) 302, 383
HpyF3I CTNAG 2 cut(s) 105, 422
Kzo9I GATC 1 cut(s) 396
LpnPI CCDG 4 cut(s) 32, 38, 126, 270
MaeIII GTNAC 1 cut(s) 35
MalI GATC 1 cut(s) 398
MboI GATC 1 cut(s) 396
MboII GAAGA 4 cut(s) 53, 80, 81, 456
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 2 cut(s) 349, 406
MluCI AATT 5 cut(s) 191, 217, 294, 378, 458
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 3 cut(s) 37, 119, 257
MroXI GAANNNNTTC 1 cut(s) 451
NdeII GATC 1 cut(s) 396
PdmI GAANNNNTTC 1 cut(s) 451
PfeI GAWTC 3 cut(s) 71, 355, 466
PflFI GACNNNGTC 1 cut(s) 287
PspFI CCCAGC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 254
PsuI RGATCY 1 cut(s) 396
PsyI GACNNNGTC 1 cut(s) 287
RsaI GTAC 1 cut(s) 416
RsaNI GTAC 1 cut(s) 415
Sau3AI GATC 1 cut(s) 396
Sau96I GGNCC 1 cut(s) 254
SduI GDGCHC 2 cut(s) 349, 406
SetI ASST 7 cut(s) 15, 130, 212, 244, 310, 318, 489
Sse9I AATT 5 cut(s) 191, 217, 294, 378, 458
SsiI CCGC 1 cut(s) 227
StyI CCWWGG 1 cut(s) 316
TaaI ACNGT 2 cut(s) 289, 419
TaqI TCGA 2 cut(s) 164, 442
TasI AATT 5 cut(s) 191, 217, 294, 378, 458
TfiI GAWTC 3 cut(s) 71, 355, 466
TspDTI ATGAA 1 cut(s) 81
Tth111I GACNNNGTC 1 cut(s) 287
XapI RAATTY 2 cut(s) 191, 294
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
XmnI GAANNNNTTC 1 cut(s) 451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.