Rroxscaffold_4G00278880

May be involved in fusion of retrograde transport vesicles derived from an endocytic compartment with the Golgi complex

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0013960
Physical Location & Seq
Reverse (-)
1829314 .. 1832110
2797 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00278880.1

Sequence Viewer

Length: 495 bp
ATGTGGGGGAAGCTAAACCAATCTATGCTTGGGGATAACGAAGAGGGTGAACAGGGTTTCTTGGATGAAGAATCTGAAGGCTTGTGTTCTTCTCTATCTGCTACTCAGTCGATGATTGTCTTTGCCAAACCCATCAAATTTGCCATTTTGTTCACCTTTGGCAATTTGTTGGCGGTTGGAAGCACAGCTTTCCTCTTTGGCCCTGCCCAACAAATGCGAATGATGTTTGACACAGTCCGAATTTATGCAACAGCTATTTACCTTGGATGTGTTGTTTTAGCACTCGTCTGTGCTCTCTTGATTCAAAGCAAAGTTTTGACACTAATTGCAATGATATGTGAGATCTGTGCCCTTATTTGGGACGAGGATGAAACAATCCCCAAGTTTCCAATTTTCTGCTTTGGCCTCATGGACAAGGAAAAAATGGACAGAGGTGACTTCCTTGTGCCGCAGCCGTTTCCCCTTAGTCCTGGATTTGAAGGATGGTACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016192 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

164

Amino Acids

18.29

Weight (kDa)

4.44

Isoelectric Point (pI)

38.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 30 - 121 1.3e-26 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013960)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G24170 AT5G24170
fragaria_vesca FvH4_7g31760
malus_domestica MD01G1219600.v1.1
prunus_persica Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1 Prupe.2G311600_v2.0.a1
pyrus_communis pycom01g22940
rosa_chinensis RchiOBHm_Chr1g0380991
rosa_laevigata RLG00000026254
rosa_roxburghii Rroxscaffold_4G00278880
rosa_rugosa Rorug01G0426200
rosa_samantha Rh1BG406000 Rh1CG420000 Rh1DG436500
rosa_wichuraiana Rw1G039210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 486
AccB1I GGYRCC 1 cut(s) 486
AciI CCGC 2 cut(s) 173, 449
AcsI RAATTY 2 cut(s) 137, 240
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 488
AfiI CCNNNNNNNGG 2 cut(s) 357, 358
AgsI TTSAA 2 cut(s) 305, 479
AjnI CCWGG 1 cut(s) 469
AluBI AGCT 3 cut(s) 13, 188, 254
AluI AGCT 3 cut(s) 13, 188, 254
Alw21I GWGCWC 1 cut(s) 295
AoxI GGCC 2 cut(s) 199, 403
ApeKI GCWGC 1 cut(s) 451
ApoI RAATTY 2 cut(s) 137, 240
Asp718I GGTACC 1 cut(s) 486
AspS9I GGNCC 1 cut(s) 200
AsuHPI GGTGA 3 cut(s) 59, 145, 446
BaeGI GKGCMC 1 cut(s) 352
BanI GGYRCC 1 cut(s) 486
Bbv12I GWGCWC 1 cut(s) 295
BbvI GCAGC 1 cut(s) 463
BccI CCATC 2 cut(s) 140, 477
BceAI ACGGC 1 cut(s) 439
BciT130I CCWGG 1 cut(s) 471
BglII AGATCT 1 cut(s) 342
BisI GCNGC 2 cut(s) 449, 452
BlsI GCNGC 2 cut(s) 450, 453
Bme1390I CCNGG 1 cut(s) 471
BmgT120I GGNCC 1 cut(s) 200
BmiI GGNNCC 1 cut(s) 488
BmrFI CCNGG 1 cut(s) 471
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 2 cut(s) 357, 358
Bse3DI GCAATG 1 cut(s) 336
BseBI CCWGG 1 cut(s) 471
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 4 cut(s) 70, 272, 373, 488
BseLI CCNNNNNNNGG 2 cut(s) 357, 358
BseMI GCAATG 1 cut(s) 336
BseMII CTCAG 1 cut(s) 119
BseSI GKGCMC 1 cut(s) 352
BseXI GCAGC 1 cut(s) 463
BshFI GGCC 2 cut(s) 201, 405
BshNI GGYRCC 1 cut(s) 486
BsiHKAI GWGCWC 1 cut(s) 295
BslFI GGGAC 1 cut(s) 374
BslI CCNNNNNNNGG 2 cut(s) 357, 358
BsmFI GGGAC 1 cut(s) 374
BsnI GGCC 2 cut(s) 201, 405
Bsp1286I GDGCHC 2 cut(s) 295, 352
Bsp143I GATC 1 cut(s) 342
BspACI CCGC 2 cut(s) 173, 449
BspANI GGCC 2 cut(s) 201, 405
BspCNI CTCAG 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 488
BspT107I GGYRCC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 336
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 1 cut(s) 342
BssT1I CCWWGG 1 cut(s) 262
Bst2UI CCWGG 1 cut(s) 471
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 36
BstDEI CTNAG 2 cut(s) 105, 464
BstF5I GGATG 4 cut(s) 70, 272, 373, 488
BstKTI GATC 1 cut(s) 345
BstMBI GATC 1 cut(s) 342
BstNI CCWGG 1 cut(s) 471
BstSCI CCNGG 1 cut(s) 469
BstSLI GKGCMC 1 cut(s) 352
BstV1I GCAGC 1 cut(s) 463
BstX2I RGATCY 1 cut(s) 342
BstYI RGATCY 1 cut(s) 342
BsuRI GGCC 2 cut(s) 201, 405
BtsCI GGATG 4 cut(s) 70, 272, 373, 488
Cfr13I GGNCC 1 cut(s) 200
Csp6I GTAC 1 cut(s) 487
CviAII CATG 1 cut(s) 409
CviJI RGCY 7 cut(s) 13, 81, 188, 201, 254, 405, 454
CviKI_1 RGCY 7 cut(s) 13, 81, 188, 201, 254, 405, 454
CviQI GTAC 1 cut(s) 487
DdeI CTNAG 2 cut(s) 105, 464
DpnI GATC 1 cut(s) 344
DpnII GATC 1 cut(s) 342
Eam1104I CTCTTC 1 cut(s) 36
EarI CTCTTC 1 cut(s) 36
Eco130I CCWWGG 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 96
EcoRII CCWGG 1 cut(s) 469
EcoT14I CCWWGG 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 262
FaeI CATG 1 cut(s) 412
FaiI YATR 4 cut(s) 26, 246, 337, 410
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 1 cut(s) 374
FatI CATG 1 cut(s) 408
Fnu4HI GCNGC 2 cut(s) 449, 452
FokI GGATG 3 cut(s) 77, 279, 380
Fsp4HI GCNGC 2 cut(s) 449, 452
GluI GCNGC 2 cut(s) 449, 452
HaeIII GGCC 2 cut(s) 201, 405
Hin1II CATG 1 cut(s) 412
HinfI GANTC 2 cut(s) 71, 301
HphI GGTGA 3 cut(s) 59, 145, 446
Hpy166II GTNNAC 2 cut(s) 50, 153
Hpy188I TCNGA 2 cut(s) 76, 239
Hpy188III TCNNGA 1 cut(s) 298
Hpy8I GTNNAC 2 cut(s) 50, 153
HpyAV CCTTC 2 cut(s) 71, 473
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4V TGCA 2 cut(s) 248, 329
HpyF3I CTNAG 2 cut(s) 105, 464
Hsp92II CATG 1 cut(s) 412
KpnI GGTACC 1 cut(s) 490
Kzo9I GATC 1 cut(s) 342
LpnPI CCDG 4 cut(s) 38, 216, 456, 483
Lsp1109I GCAGC 1 cut(s) 463
MaeIII GTNAC 1 cut(s) 434
MalI GATC 1 cut(s) 344
MboI GATC 1 cut(s) 342
MboII GAAGA 3 cut(s) 53, 80, 81
MflI RGATCY 1 cut(s) 342
MhlI GDGCHC 2 cut(s) 295, 352
MluCI AATT 5 cut(s) 137, 163, 240, 324, 390
MmeI TCCRAC 1 cut(s) 157
MnlI CCTC 5 cut(s) 37, 203, 358, 416, 425
MspR9I CCNGG 1 cut(s) 471
MvaI CCWGG 1 cut(s) 471
NdeII GATC 1 cut(s) 342
NlaIII CATG 1 cut(s) 412
NlaIV GGNNCC 1 cut(s) 488
NmuCI GTSAC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 71, 301
PflFI GACNNNGTC 1 cut(s) 233
PfoI TCCNGGA 1 cut(s) 469
PkrI GCNGC 2 cut(s) 450, 453
Psp6I CCWGG 1 cut(s) 469
PspGI CCWGG 1 cut(s) 469
PspN4I GGNNCC 1 cut(s) 488
PspPI GGNCC 1 cut(s) 200
PsuI RGATCY 1 cut(s) 342
PsyI GACNNNGTC 1 cut(s) 233
RsaI GTAC 1 cut(s) 488
RsaNI GTAC 1 cut(s) 487
SatI GCNGC 2 cut(s) 449, 452
Sau3AI GATC 1 cut(s) 342
Sau96I GGNCC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 471
SduI GDGCHC 2 cut(s) 295, 352
SetI ASST 6 cut(s) 15, 158, 190, 256, 264, 436
Sse9I AATT 5 cut(s) 137, 163, 240, 324, 390
SsiI CCGC 2 cut(s) 173, 449
StyD4I CCNGG 1 cut(s) 469
StyI CCWWGG 1 cut(s) 262
TaaI ACNGT 1 cut(s) 235
TaqI TCGA 1 cut(s) 110
TasI AATT 5 cut(s) 137, 163, 240, 324, 390
TauI GCSGC 1 cut(s) 451
TfiI GAWTC 2 cut(s) 71, 301
TseFI GTSAC 1 cut(s) 434
TseI GCWGC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 434
TspDTI ATGAA 2 cut(s) 81, 384
Tth111I GACNNNGTC 1 cut(s) 233
XapI RAATTY 2 cut(s) 137, 240
XcmI CCANNNNNNNNNTGG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.