Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006187

Physical Location & Seq

Genomic Coordinates Forward (+)

8967655 .. 8969369

Gene Structure 1715 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G25760.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGGCATCAAGAGCGCGACTGTTTAAAGAATACAAAGAGGTACAGCGAGAGAAAGTAGCAGATCCTGATATTCAATTGATCTGTGACGATACCAACATATTCAAATGGACCGCTCTTATCAAAGGACCTTCGGAGACTCCTTACGAAGGCGGTGTTTTTCAGCTTGCTTTTTCTGTTCCTGAACCTTATCCTTTGCAACCTCCTCAAGTTCGATTCTTGACCAAGATATTCCATCCTAATGTTCATTTCAAGACAGGAGAAATATGTCTCGACATTTTGAAGAATGCTTGGAGTCCTGCTTGGACGCTTCAGTCTGTGTGTAGAGCTATCATAGCATTGATGGCTCATCCTGAGCCGGACAGTCCTCTTAACTGCGACTCAGGGAATCTTCTAAGATCTGGTGATGTGAGAGGGTTCAATTCAATGGCACAAATGTATACACGCCTCGCCGCTATGCCTAAGAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con

Protein Analysis

157

Amino Acids

17.71

Weight (kDa)

8.36

Isoelectric Point (pI)

42.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	7 - 146	1.7e-43	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25760 AT5G25760
fragaria_vesca	FvH4_2g35960
malus_domestica	MD08G1116800.v1.1 MD15G1096300.v1.1
prunus_persica	Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1
pyrus_communis	pycom08g09730 pycom15g08840
rosa_chinensis	RchiOBHm_Chr6g0305911
rosa_laevigata	RLG00000010847
rosa_multiflora	Rmu_sc0001809.1_g000048
rosa_rugosa	Rorug06G0345100 Rorug06G0345200 Rorug06G0345300.1
rosa_samantha	Rh6AG456800 Rh6BG444500 Rh6CG470700 Rh6DG457400
rosa_wichuraiana	Rw6G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
AccBSI	CCGCTC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	440
AccII	CGCG	1 cut(s)	19
AciI	CCGC	3 cut(s)	114, 153, 453
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	45
AfiI	CCNNNNNNNGG	2 cut(s)	149, 467
AgsI	TTSAA	6 cut(s)	77, 106, 253, 283, 421, 426
AluBI	AGCT	2 cut(s)	166, 329
AluI	AGCT	2 cut(s)	166, 329
Alw26I	GTCTC	2 cut(s)	131, 275
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	1 cut(s)	68
AspLEI	GCGC	1 cut(s)	19
AspS9I	GGNCC	2 cut(s)	111, 128
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	2 cut(s)	111, 128
BccI	CCATC	2 cut(s)	243, 337
BcoDI	GTCTC	2 cut(s)	131, 275
BglII	AGATCT	1 cut(s)	398
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme18I	GGWCC	2 cut(s)	111, 128
BmgT120I	GGNCC	2 cut(s)	111, 128
BmsI	GCATC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	2 cut(s)	149, 467
BseGI	GGATG	2 cut(s)	235, 349
BseLI	CCNNNNNNNGG	2 cut(s)	149, 467
BseMII	CTCAG	2 cut(s)	345, 396
BseRI	GAGGAG	1 cut(s)	195
Bsh1236I	CGCG	1 cut(s)	19
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	2 cut(s)	149, 467
BsmAI	GTCTC	2 cut(s)	131, 275
BsmI	GAATGC	1 cut(s)	292
Bsp143I	GATC	3 cut(s)	64, 81, 398
BspACI	CCGC	3 cut(s)	114, 153, 453
BspCNI	CTCAG	2 cut(s)	346, 395
BspFNI	CGCG	1 cut(s)	19
BspPI	GGATC	1 cut(s)	59
BsrBI	CCGCTC	1 cut(s)	116
BssMI	GATC	3 cut(s)	64, 81, 398
BssNAI	GTATAC	1 cut(s)	441
Bst1107I	GTATAC	1 cut(s)	441
Bst4CI	ACNGT	2 cut(s)	24, 365
BstC8I	GCNNGC	2 cut(s)	6, 168
BstDEI	CTNAG	4 cut(s)	354, 382, 395, 462
BstENI	CCTNNNNNAGG	2 cut(s)	147, 465
BstF5I	GGATG	2 cut(s)	235, 349
BstFNI	CGCG	1 cut(s)	19
BstHHI	GCGC	1 cut(s)	19
BstKTI	GATC	3 cut(s)	67, 84, 401
BstMAI	GTCTC	2 cut(s)	131, 275
BstMBI	GATC	3 cut(s)	64, 81, 398
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
BstUI	CGCG	1 cut(s)	19
BstX2I	RGATCY	2 cut(s)	64, 398
BstYI	RGATCY	2 cut(s)	64, 398
BstZ17I	GTATAC	1 cut(s)	441
BtsCI	GGATG	2 cut(s)	235, 349
Cac8I	GCNNGC	2 cut(s)	6, 168
CaiI	CAGNNNCTG	1 cut(s)	68
CfoI	GCGC	1 cut(s)	19
Cfr13I	GGNCC	2 cut(s)	111, 128
CseI	GACGC	1 cut(s)	316
Csp6I	GTAC	1 cut(s)	44
CviJI	RGCY	4 cut(s)	166, 329, 347, 358
CviKI_1	RGCY	4 cut(s)	166, 329, 347, 358
CviQI	GTAC	1 cut(s)	44
DdeI	CTNAG	4 cut(s)	354, 382, 395, 462
DpnI	GATC	3 cut(s)	66, 83, 400
DpnII	GATC	3 cut(s)	64, 81, 398
DraI	TTTAAA	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
Eco47I	GGWCC	2 cut(s)	111, 128
Eco57I	CTGAAG	1 cut(s)	296
EcoNI	CCTNNNNNAGG	2 cut(s)	147, 465
EcoO109I	RGGNCCY	1 cut(s)	128
FaiI	YATR	5 cut(s)	101, 268, 335, 441, 458
FblI	GTMKAC	1 cut(s)	440
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	222, 336
Fsp4HI	GCNGC	1 cut(s)	453
GlaI	GCGC	1 cut(s)	18
GluI	GCNGC	1 cut(s)	453
HapII	CCGG	1 cut(s)	359
HgaI	GACGC	1 cut(s)	316
HhaI	GCGC	1 cut(s)	19
Hin6I	GCGC	1 cut(s)	17
HinP1I	GCGC	1 cut(s)	17
HinfI	GANTC	5 cut(s)	139, 216, 295, 380, 388
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	441
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	7 cut(s)	12, 68, 182, 220, 253, 272, 353
Hpy8I	GTNNAC	1 cut(s)	441
HpyAV	CCTTC	2 cut(s)	141, 143
HpyCH4III	ACNGT	2 cut(s)	24, 365
HpyCH4V	TGCA	2 cut(s)	4, 199
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
HpyF3I	CTNAG	4 cut(s)	354, 382, 395, 462
HspAI	GCGC	1 cut(s)	17
Kzo9I	GATC	3 cut(s)	64, 81, 398
LpnPI	CCDG	8 cut(s)	81, 195, 243, 312, 366, 369, 372, 387
LweI	GCATC	1 cut(s)	17
MaeIII	GTNAC	1 cut(s)	86
MalI	GATC	3 cut(s)	66, 83, 400
MbiI	CCGCTC	1 cut(s)	116
MboI	GATC	3 cut(s)	64, 81, 398
MboII	GAAGA	2 cut(s)	295, 383
MfeI	CAATTG	1 cut(s)	77
MflI	RGATCY	2 cut(s)	64, 398
MluCI	AATT	2 cut(s)	77, 421
MlyI	GAGTC	3 cut(s)	133, 304, 374
MnlI	CCTC	6 cut(s)	34, 213, 216, 378, 407, 458
MseI	TTAA	2 cut(s)	27, 372
MslI	CAYNNNNRTG	1 cut(s)	240
MspI	CCGG	1 cut(s)	359
MunI	CAATTG	1 cut(s)	77
Mva1269I	GAATGC	1 cut(s)	292
MvnI	CGCG	1 cut(s)	19
MwoI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
NdeII	GATC	3 cut(s)	64, 81, 398
NmuCI	GTSAC	1 cut(s)	86
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	2 cut(s)	216, 388
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	3 cut(s)	133, 303, 374
PpsI	GAGTC	3 cut(s)	133, 303, 374
PpuMI	RGGWCCY	1 cut(s)	128
Psp5II	RGGWCCY	1 cut(s)	128
PspPI	GGNCC	2 cut(s)	111, 128
PspPPI	RGGWCCY	1 cut(s)	128
PstNI	CAGNNNCTG	1 cut(s)	68
PsuI	RGATCY	2 cut(s)	64, 398
RsaI	GTAC	1 cut(s)	45
RsaNI	GTAC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	27, 372
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	3 cut(s)	64, 81, 398
Sau96I	GGNCC	2 cut(s)	111, 128
SchI	GAGTC	3 cut(s)	133, 304, 374
SetI	ASST	6 cut(s)	45, 133, 168, 190, 205, 331
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	2 cut(s)	111, 128
SmiMI	CAYNNNNRTG	1 cut(s)	240
SmlI	CTYRAG	1 cut(s)	207
SmoI	CTYRAG	1 cut(s)	207
Sse9I	AATT	2 cut(s)	77, 421
SsiI	CCGC	3 cut(s)	114, 153, 453
TaaI	ACNGT	2 cut(s)	24, 365
TaqI	TCGA	2 cut(s)	214, 273
TasI	AATT	2 cut(s)	77, 421
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	2 cut(s)	216, 388
Tru1I	TTAA	2 cut(s)	27, 372
Tru9I	TTAA	2 cut(s)	27, 372
TseFI	GTSAC	1 cut(s)	86
Tsp45I	GTSAC	1 cut(s)	86
TspDTI	ATGAA	1 cut(s)	236
VpaK11BI	GGWCC	2 cut(s)	111, 128
XagI	CCTNNNNNAGG	2 cut(s)	147, 465
XmiI	GTMKAC	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.