Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006187

Physical Location & Seq

Genomic Coordinates Forward (+)

49601989 .. 49604708

Gene Structure 2720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0345100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGCACCCGACTACATTTTCAGCAAGACCCTCCGATCCGCATTTTCCCGTTTGTTTTGCAGATATCGGCTCCCGGTGGAAGCTCTTCAAAGTCGGTGGTTTTGTACAAAAAGACTGACCAGCACCAGCAGCAGCTCCGATGATTTTACAGTCTCCTACCTGGTTAACTCATGTGGGCTTTCCCCAGAAGCCGCCATTGTAGCATCCCACAAGGTAAAGCTTCAATCTTTAGTAAAACCAGACTCTGTGTTAGCCCTTTTGAGGGAGTATGAATTCTCGGGCACCCAGATTTCAACTCTTGTGCGGAGACACCCTAGAATTCTGTTGGCCGATGCCAAGAAAACTCTTGCGCCGAAGCTTGAGTTCTTCTGCTCCGTAGGAATGTCAAGGCTCGACCTTGCAAAAACTGTGACCCACAGCCAATCGATCTTGGACCGAAGCTTAGAAAACCATATTGTGCCCTCTTTTAATTTGCTCAAGGATGTGGTGCACTCTGATGTCAAGGTCCTCGGTATTTTGAAGTGCAACCCATGGATTTTCAGGCAAAAGCTATCCAAGACTATGATGCCCAATATTGAGCTTCTGAGAGCATTAGGCATGCCCCAGTCGTCTATCGCTAGGTTGATAACATATTATGTTCAGATTGTGATGAAAGAGCCTGAATCGTTCAGTCAACTTGTGGGTGAAGTCGAACAATTGGGATTCGACCTTAGAAAGACGTTCTTTGTGCAAGCCATGCTCGCATTATCTGGGAAGAACAAGACGACATGGAAGCGAAATGAAGAGGCTTATAGGAGGTGGGGTTGGTCGGATAATGATATTCTTTCTGCCTTCAGGTTGTATCCACTGTGCATGACCAAGTCTGAGAAGAAACTAATGGGAACAATGGATTTCTTAGTGAACAAGATGGGATGGCATTCCCAGAAGATTGCAAAATGTCCCCATGTTTTGTGTTTCAGTTTTGAGAAGAGAATCATCCCAAGGTTTTCGGTTGTTAAAGTTTTGATGTTGAAAGGACTGGTAGAAGGGGAAAAGTTGAGTTTGTCTACTATTGTTGCGATTCCAGAAAACTACTTCTTGAATAAGTTTGTGACCACTAATCTGCGCCTAGTACCTGAATTGTTAAATGTGTACCACGGCAAAGTGGATGTGCAGGATGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con

Protein Analysis

387

Amino Acids

44.23

Weight (kDa)

9.64

Isoelectric Point (pI)

52.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
mTERF	PF02536	84 - 240	8.6e-23	mTERF
mTERF	PF02536	250 - 359	3.9e-15	mTERF

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25760 AT5G25760
fragaria_vesca	FvH4_2g35960
malus_domestica	MD08G1116800.v1.1 MD15G1096300.v1.1
prunus_persica	Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1
pyrus_communis	pycom08g09730 pycom15g08840
rosa_chinensis	RchiOBHm_Chr6g0305911
rosa_laevigata	RLG00000010847
rosa_multiflora	Rmu_sc0001809.1_g000048
rosa_rugosa	Rorug06G0345100 Rorug06G0345200 Rorug06G0345300.1
rosa_samantha	Rh6AG456800 Rh6BG444500 Rh6CG470700 Rh6DG457400
rosa_wichuraiana	Rw6G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	4, 281
AccI	GTMKAC	1 cut(s)	1046
AciI	CCGC	3 cut(s)	39, 192, 304
AclWI	GGATC	1 cut(s)	30
AcoI	YGGCCR	1 cut(s)	327
AcsI	RAATTY	2 cut(s)	272, 318
AcuI	CTGAAG	1 cut(s)	817
AfaI	GTAC	3 cut(s)	106, 1113, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	261, 262
AgsI	TTSAA	6 cut(s)	89, 224, 294, 520, 1012, 1081
AjnI	CCWGG	1 cut(s)	159
AluBI	AGCT	7 cut(s)	83, 135, 220, 358, 441, 550, 580
AluI	AGCT	7 cut(s)	83, 135, 220, 358, 441, 550, 580
Alw21I	GWGCWC	1 cut(s)	492
Alw26I	GTCTC	2 cut(s)	157, 301
Alw44I	GTGCAC	1 cut(s)	488
AlwI	GGATC	1 cut(s)	30
AlwNI	CAGNNNCTG	1 cut(s)	245
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	1 cut(s)	327
ApaLI	GTGCAC	1 cut(s)	488
ApeKI	GCWGC	2 cut(s)	129, 132
ApoI	RAATTY	2 cut(s)	272, 318
Asp700I	GAANNNNTTC	1 cut(s)	84
AspLEI	GCGC	2 cut(s)	352, 1107
AspS9I	GGNCC	2 cut(s)	433, 505
AsuC2I	CCSGG	1 cut(s)	74
AsuHPI	GGTGA	1 cut(s)	695
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	2 cut(s)	433, 505
BaeGI	GKGCMC	3 cut(s)	284, 462, 492
BanI	GGYRCC	2 cut(s)	4, 281
Bbv12I	GWGCWC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	141, 144
BccI	CCATC	2 cut(s)	901, 906
BceAI	ACGGC	1 cut(s)	1153
BciT130I	CCWGG	1 cut(s)	161
BciVI	GTATCC	1 cut(s)	852
BcnI	CCSGG	1 cut(s)	74
BcoDI	GTCTC	2 cut(s)	157, 301
BfaI	CTAG	3 cut(s)	315, 618, 1109
BfuI	GTATCC	1 cut(s)	852
BisI	GCNGC	3 cut(s)	130, 133, 192
BlsI	GCNGC	3 cut(s)	131, 134, 193
Bme1390I	CCNGG	2 cut(s)	74, 161
Bme18I	GGWCC	2 cut(s)	433, 505
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	2 cut(s)	433, 505
BmiI	GGNNCC	3 cut(s)	6, 71, 283
BmrFI	CCNGG	2 cut(s)	74, 161
BmrI	ACTGGG	1 cut(s)	598
BmsI	GCATC	3 cut(s)	212, 322, 555
BmuI	ACTGGG	1 cut(s)	598
BpuEI	CTTGAG	2 cut(s)	380, 461
BpuMI	CCSGG	1 cut(s)	74
Bsa29I	ATCGAT	1 cut(s)	425
BsaJI	CCNNGG	4 cut(s)	508, 530, 980, 1135
BsaXI	ACNNNNNCTCC	2 cut(s)	787, 817
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 262
Bse1I	ACTGG	2 cut(s)	604, 1023
BseBI	CCWGG	1 cut(s)	161
BseCI	ATCGAT	1 cut(s)	425
BseDI	CCNNGG	4 cut(s)	508, 530, 980, 1135
BseGI	GGATG	6 cut(s)	203, 487, 917, 975, 1153, 1162
BseLI	CCNNNNNNNGG	2 cut(s)	261, 262
BseMII	CTCAG	2 cut(s)	575, 855
BseNI	ACTGG	2 cut(s)	604, 1023
BseSI	GKGCMC	3 cut(s)	284, 462, 492
BseXI	GCAGC	2 cut(s)	141, 144
BshFI	GGCC	1 cut(s)	329
BshNI	GGYRCC	2 cut(s)	4, 281
BshVI	ATCGAT	1 cut(s)	425
BsiHKAI	GWGCWC	1 cut(s)	492
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	1 cut(s)	74
BslFI	GGGAC	1 cut(s)	924
BslI	CCNNNNNNNGG	2 cut(s)	261, 262
BsmAI	GTCTC	2 cut(s)	157, 301
BsmFI	GGGAC	1 cut(s)	924
BsmI	GAATGC	1 cut(s)	916
BsnI	GGCC	1 cut(s)	329
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	3 cut(s)	284, 462, 492
Bsp1407I	TGTACA	1 cut(s)	104
Bsp143I	GATC	2 cut(s)	35, 426
Bsp19I	CCATGG	1 cut(s)	530
BspACI	CCGC	3 cut(s)	39, 192, 304
BspANI	GGCC	1 cut(s)	329
BspCNI	CTCAG	2 cut(s)	576, 856
BspDI	ATCGAT	1 cut(s)	425
BspLI	GGNNCC	3 cut(s)	6, 71, 283
BspPI	GGATC	1 cut(s)	30
BspQI	GCTCTTC	1 cut(s)	90
BspT107I	GGYRCC	2 cut(s)	4, 281
BsrGI	TGTACA	1 cut(s)	104
BsrI	ACTGG	2 cut(s)	604, 1023
BssECI	CCNNGG	4 cut(s)	508, 530, 980, 1135
BssMI	GATC	2 cut(s)	35, 426
BssT1I	CCWWGG	2 cut(s)	530, 980
Bst2UI	CCWGG	1 cut(s)	161
Bst4CI	ACNGT	3 cut(s)	151, 409, 849
Bst6I	CTCTTC	3 cut(s)	90, 777, 962
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstAUI	TGTACA	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	599, 732, 741
BstDEI	CTNAG	5 cut(s)	442, 584, 710, 864, 895
BstDSI	CCRYGG	2 cut(s)	530, 1135
BstF5I	GGATG	6 cut(s)	203, 487, 917, 975, 1153, 1162
BstHHI	GCGC	2 cut(s)	352, 1107
BstKTI	GATC	2 cut(s)	38, 429
BstMAI	GTCTC	2 cut(s)	157, 301
BstMBI	GATC	2 cut(s)	35, 426
BstMWI	GCNNNNNNNGC	4 cut(s)	129, 200, 736, 740
BstNI	CCWGG	1 cut(s)	161
BstNSI	RCATGY	1 cut(s)	601
BstSCI	CCNGG	2 cut(s)	72, 159
BstSLI	GKGCMC	3 cut(s)	284, 462, 492
BstV1I	GCAGC	2 cut(s)	141, 144
Bsu15I	ATCGAT	1 cut(s)	425
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	1 cut(s)	329
BsuTUI	ATCGAT	1 cut(s)	425
BtgI	CCRYGG	2 cut(s)	530, 1135
BtsCI	GGATG	6 cut(s)	203, 487, 917, 975, 1153, 1162
BtsIMutI	CAGTG	1 cut(s)	845
Cac8I	GCNNGC	3 cut(s)	599, 732, 741
CaiI	CAGNNNCTG	1 cut(s)	245
CfoI	GCGC	2 cut(s)	352, 1107
Cfr13I	GGNCC	2 cut(s)	433, 505
ClaI	ATCGAT	1 cut(s)	425
CsiI	ACCWGGT	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	105, 1112, 1132
CspCI	CAANNNNNGTGG	2 cut(s)	77, 112
CviAII	CATG	7 cut(s)	171, 531, 598, 736, 768, 853, 944
CviQI	GTAC	3 cut(s)	105, 1112, 1132
DdeI	CTNAG	5 cut(s)	442, 584, 710, 864, 895
DpnI	GATC	2 cut(s)	37, 428
DpnII	GATC	2 cut(s)	35, 426
EaeI	YGGCCR	1 cut(s)	327
Eam1104I	CTCTTC	3 cut(s)	90, 777, 962
EarI	CTCTTC	3 cut(s)	90, 777, 962
Eco130I	CCWWGG	2 cut(s)	530, 980
Eco32I	GATATC	1 cut(s)	65
Eco47I	GGWCC	2 cut(s)	433, 505
Eco57I	CTGAAG	1 cut(s)	817
Eco88I	CYCGRG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	505
EcoRI	GAATTC	2 cut(s)	272, 318
EcoRII	CCWGG	1 cut(s)	159
EcoRV	GATATC	1 cut(s)	65
EcoT14I	CCWWGG	2 cut(s)	530, 980
ErhI	CCWWGG	2 cut(s)	530, 980
FaeI	CATG	7 cut(s)	174, 534, 601, 739, 771, 856, 947
FalI	AAGNNNNNCTT	2 cut(s)	707, 739
FaqI	GGGAC	1 cut(s)	924
FatI	CATG	7 cut(s)	170, 530, 597, 735, 767, 852, 943
FblI	GTMKAC	1 cut(s)	1046
Fnu4HI	GCNGC	3 cut(s)	130, 133, 192
FokI	GGATG	5 cut(s)	190, 494, 924, 962, 1160
Fsp4HI	GCNGC	3 cut(s)	130, 133, 192
FspBI	CTAG	3 cut(s)	315, 618, 1109
GlaI	GCGC	2 cut(s)	351, 1106
GluI	GCNGC	3 cut(s)	130, 133, 192
HaeIII	GGCC	1 cut(s)	329
HapII	CCGG	1 cut(s)	74
HhaI	GCGC	2 cut(s)	352, 1107
Hin1II	CATG	7 cut(s)	174, 534, 601, 739, 771, 856, 947
Hin6I	GCGC	2 cut(s)	350, 1105
HinP1I	GCGC	2 cut(s)	350, 1105
HincII	GTYRAC	2 cut(s)	166, 674
HindII	GTYRAC	2 cut(s)	166, 674
HindIII	AAGCTT	3 cut(s)	218, 356, 439
HinfI	GANTC	5 cut(s)	242, 662, 702, 972, 1060
HpaI	GTTAAC	1 cut(s)	166
HpaII	CCGG	1 cut(s)	74
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	6 cut(s)	166, 490, 674, 901, 1047, 1132
Hpy188I	TCNGA	7 cut(s)	35, 139, 496, 585, 642, 811, 865
Hpy188III	TCNNGA	2 cut(s)	1064, 1078
Hpy8I	GTNNAC	6 cut(s)	166, 490, 674, 901, 1047, 1132
HpyAV	CCTTC	2 cut(s)	841, 1019
HpyCH4III	ACNGT	3 cut(s)	151, 409, 849
HpyCH4IV	ACGT	1 cut(s)	719
HpyCH4V	TGCA	8 cut(s)	60, 401, 490, 525, 730, 852, 932, 1153
HpyF10VI	GCNNNNNNNGC	4 cut(s)	129, 200, 736, 740
HpyF3I	CTNAG	5 cut(s)	442, 584, 710, 864, 895
HpySE526I	ACGT	1 cut(s)	719
Hsp92II	CATG	7 cut(s)	174, 534, 601, 739, 771, 856, 947
HspAI	GCGC	2 cut(s)	350, 1105
KspAI	GTTAAC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	35, 426
LguI	GCTCTTC	1 cut(s)	90
LmnI	GCTCC	3 cut(s)	75, 140, 377
Lsp1109I	GCAGC	2 cut(s)	141, 144
LweI	GCATC	3 cut(s)	212, 322, 555
MabI	ACCWGGT	1 cut(s)	159
MaeI	CTAG	3 cut(s)	315, 618, 1109
MaeII	ACGT	1 cut(s)	719
MaeIII	GTNAC	2 cut(s)	409, 1090
MalI	GATC	2 cut(s)	37, 428
MboI	GATC	2 cut(s)	35, 426
MboII	GAAGA	7 cut(s)	77, 358, 766, 794, 880, 937, 979
MfeI	CAATTG	1 cut(s)	695
MhlI	GDGCHC	3 cut(s)	284, 462, 492
MluCI	AATT	5 cut(s)	272, 318, 469, 695, 1118
MlyI	GAGTC	1 cut(s)	236
MmeI	TCCRAC	1 cut(s)	789
MnlI	CCTC	6 cut(s)	41, 255, 472, 518, 778, 789
MroXI	GAANNNNTTC	1 cut(s)	84
MseI	TTAA	4 cut(s)	165, 468, 996, 1124
MslI	CAYNNNNRTG	1 cut(s)	495
MspI	CCGG	1 cut(s)	74
MspR9I	CCNGG	2 cut(s)	74, 161
MunI	CAATTG	1 cut(s)	695
Mva1269I	GAATGC	1 cut(s)	916
MvaI	CCWGG	1 cut(s)	161
MwoI	GCNNNNNNNGC	4 cut(s)	129, 200, 736, 740
NciI	CCSGG	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	530
NdeII	GATC	2 cut(s)	35, 426
NlaIII	CATG	7 cut(s)	174, 534, 601, 739, 771, 856, 947
NlaIV	GGNNCC	3 cut(s)	6, 71, 283
NmuCI	GTSAC	2 cut(s)	409, 1090
NspI	RCATGY	1 cut(s)	601
PaeI	GCATGC	1 cut(s)	601
PciSI	GCTCTTC	1 cut(s)	90
PctI	GAATGC	1 cut(s)	916
PdmI	GAANNNNTTC	1 cut(s)	84
PfeI	GAWTC	4 cut(s)	662, 702, 972, 1060
PflFI	GACNNNGTC	1 cut(s)	859
PkrI	GCNGC	3 cut(s)	131, 134, 193
PleI	GAGTC	1 cut(s)	236
PpsI	GAGTC	1 cut(s)	236
PpuMI	RGGWCCY	1 cut(s)	505
Psp5II	RGGWCCY	1 cut(s)	505
Psp6I	CCWGG	1 cut(s)	159
PspGI	CCWGG	1 cut(s)	159
PspN4I	GGNNCC	3 cut(s)	6, 71, 283
PspPI	GGNCC	2 cut(s)	433, 505
PspPPI	RGGWCCY	1 cut(s)	505
PstNI	CAGNNNCTG	1 cut(s)	245
PsyI	GACNNNGTC	1 cut(s)	859
RsaI	GTAC	3 cut(s)	106, 1113, 1133
RsaNI	GTAC	3 cut(s)	105, 1112, 1132
RseI	CAYNNNNRTG	1 cut(s)	495
SapI	GCTCTTC	1 cut(s)	90
SaqAI	TTAA	4 cut(s)	165, 468, 996, 1124
SatI	GCNGC	3 cut(s)	130, 133, 192
Sau3AI	GATC	2 cut(s)	35, 426
Sau96I	GGNCC	2 cut(s)	433, 505
SchI	GAGTC	1 cut(s)	236
ScrFI	CCNGG	2 cut(s)	74, 161
SduI	GDGCHC	3 cut(s)	284, 462, 492
SexAI	ACCWGGT	1 cut(s)	159
SfaNI	GCATC	3 cut(s)	212, 322, 555
SinI	GGWCC	2 cut(s)	433, 505
SmiMI	CAYNNNNRTG	1 cut(s)	495
SmlI	CTYRAG	2 cut(s)	359, 476
SmoI	CTYRAG	2 cut(s)	359, 476
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	5 cut(s)	272, 318, 469, 695, 1118
SsiI	CCGC	3 cut(s)	39, 192, 304
SspI	AATATT	1 cut(s)	574
SspMI	CTAG	3 cut(s)	315, 618, 1109
StyD4I	CCNGG	2 cut(s)	72, 159
StyI	CCWWGG	2 cut(s)	530, 980
TaaI	ACNGT	3 cut(s)	151, 409, 849
TaiI	ACGT	1 cut(s)	722
TaqI	TCGA	4 cut(s)	393, 425, 690, 705
TaqII	GACCGA	1 cut(s)	450
TasI	AATT	5 cut(s)	272, 318, 469, 695, 1118
TatI	WGTACW	1 cut(s)	104
TauI	GCSGC	1 cut(s)	194
TfiI	GAWTC	4 cut(s)	662, 702, 972, 1060
Tru1I	TTAA	4 cut(s)	165, 468, 996, 1124
Tru9I	TTAA	4 cut(s)	165, 468, 996, 1124
TscAI	CASTG	1 cut(s)	852
TseFI	GTSAC	2 cut(s)	409, 1090
TseI	GCWGC	2 cut(s)	129, 132
Tsp45I	GTSAC	2 cut(s)	409, 1090
TspDTI	ATGAA	3 cut(s)	285, 665, 795
TspGWI	ACGGA	1 cut(s)	364
TspRI	CASTG	1 cut(s)	852
Tth111I	GACNNNGTC	1 cut(s)	859
VneI	GTGCAC	1 cut(s)	488
VpaK11BI	GGWCC	2 cut(s)	433, 505
XapI	RAATTY	2 cut(s)	272, 318
XceI	RCATGY	1 cut(s)	601
XmiI	GTMKAC	1 cut(s)	1046
XmnI	GAANNNNTTC	1 cut(s)	84
XspI	CTAG	3 cut(s)	315, 618, 1109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.