Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006187

Physical Location & Seq

Genomic Coordinates Reverse (-)

26430138 .. 26432599

Gene Structure 2462 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35960.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGCAGGCATCAAGAGCTAGGCTTTTCAAGGAATACAAAGAGGTTCAACGAGAGAAAGTTGCAGATCCAGATATTCAGTTAGTTTGTGATGACTCCAACATTTTTAAGTGGACGGCTCTCATCAAGGGACCATCGGAGACTCCGTTTGAGGGTGGCATATTCCAGCTTGCTTTTGCAGTGCCTGAGCAGTATCCATTGCAACCTCCACAAGTCAGGTTCTTGACAAAAATATTCCATCCAAATGTGCATTTCAAGACAGGAGAGATATGCCTTGACATTTTGAAGAATGCATGGAGCCCTGCTTGGACACTTCAGTCTGTTTGTAGGGCTATAATTGCTTTAATGGCCCATCCAGAACCTGATAGCCCGCTGAACTGTGATTCAGGCAATCTTCTGCGTGCTGGCGATATCAAGGGGTACCATTCCATGGCAAGAATGTACACTAGGCTTGCCGCCATGCCCAAAAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006464 GO:0006605 GO:0006625 GO:0006629 GO:0006631 GO:0006635 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007031 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009987 GO:0015031 GO:0015833 GO:0015919 GO:0016042 GO:0016043 GO:0016054 GO:0016558 GO:0016567 GO:0016740 GO:0017038 GO:0019395 GO:0019538 GO:0019752 GO:0019787 GO:0019899 GO:0030258 GO:0031625 GO:0032446 GO:0032787 GO:0033036 GO:0033365 GO:0034440 GO:0034613 GO:0036211 GO:0042886 GO:0043170 GO:0043412 GO:0043436 GO:0043574 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044260 GO:0044267 GO:0044281 GO:0044282 GO:0044389 GO:0044424 GO:0044464 GO:0044743 GO:0045184 GO:0046395 GO:0046907 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0055085 GO:0055114 GO:0061630 GO:0061659 GO:0065002 GO:0070647 GO:0070727 GO:0071702 GO:0071704 GO:0071705 GO:0071806 GO:0071840 GO:0072329 GO:0072594 GO:0072662 GO:0072663 GO:0140096 GO:1901564 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UQ_con

Protein Analysis

158

Amino Acids

17.73

Weight (kDa)

8.69

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	7 - 146	3.9e-43	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006187)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G25760 AT5G25760
fragaria_vesca	FvH4_2g35960
malus_domestica	MD08G1116800.v1.1 MD15G1096300.v1.1
prunus_persica	Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1 Prupe.1G451200_v2.0.a1
pyrus_communis	pycom08g09730 pycom15g08840
rosa_chinensis	RchiOBHm_Chr6g0305911
rosa_laevigata	RLG00000010847
rosa_multiflora	Rmu_sc0001809.1_g000048
rosa_rugosa	Rorug06G0345100 Rorug06G0345200 Rorug06G0345300.1
rosa_samantha	Rh6AG456800 Rh6BG444500 Rh6CG470700 Rh6DG457400
rosa_wichuraiana	Rw6G039850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	313
Acc65I	GGTACC	1 cut(s)	417
AccB1I	GGYRCC	1 cut(s)	417
AccB7I	CCANNNNNTGG	1 cut(s)	427
AciI	CCGC	2 cut(s)	368, 453
AclWI	GGATC	1 cut(s)	59
AcuI	CTGAAG	1 cut(s)	296
AfaI	GTAC	2 cut(s)	419, 440
AfiI	CCNNNNNNNGG	3 cut(s)	149, 427, 467
AgsI	TTSAA	4 cut(s)	28, 47, 253, 283
AluBI	AGCT	2 cut(s)	17, 166
AluI	AGCT	2 cut(s)	17, 166
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	59
AlwNI	CAGNNNCTG	2 cut(s)	182, 359
AoxI	GGCC	1 cut(s)	345
Asp718I	GGTACC	1 cut(s)	417
AspS9I	GGNCC	2 cut(s)	128, 346
AvaII	GGWCC	1 cut(s)	128
BanI	GGYRCC	1 cut(s)	417
BanII	GRGCYC	1 cut(s)	299
BccI	CCATC	3 cut(s)	139, 243, 357
BceAI	ACGGC	1 cut(s)	129
BciVI	GTATCC	1 cut(s)	201
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	18, 444
BfuI	GTATCC	1 cut(s)	201
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	2 cut(s)	128, 346
BmiI	GGNNCC	3 cut(s)	129, 296, 419
BmsI	GCATC	1 cut(s)	17
Bpu10I	CCTNAGC	1 cut(s)	183
BsaJI	CCNNGG	1 cut(s)	426
BsaXI	ACNNNNNCTCC	2 cut(s)	128, 158
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 427, 467
Bse3DI	GCAATG	1 cut(s)	194
BseDI	CCNNGG	1 cut(s)	426
BseGI	GGATG	2 cut(s)	235, 349
BseLI	CCNNNNNNNGG	3 cut(s)	149, 427, 467
BseMI	GCAATG	1 cut(s)	194
BseMII	CTCAG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	347
BshNI	GGYRCC	1 cut(s)	417
BslFI	GGGAC	1 cut(s)	141
BslI	CCNNNNNNNGG	3 cut(s)	149, 427, 467
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	141
BsmI	GAATGC	1 cut(s)	292
BsnI	GGCC	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp1407I	TGTACA	1 cut(s)	438
Bsp143I	GATC	1 cut(s)	64
Bsp19I	CCATGG	1 cut(s)	426
BspACI	CCGC	2 cut(s)	368, 453
BspANI	GGCC	1 cut(s)	347
BspCNI	CTCAG	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	129, 296, 419
BspPI	GGATC	1 cut(s)	59
BspT107I	GGYRCC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	194
BsrGI	TGTACA	1 cut(s)	438
BssECI	CCNNGG	1 cut(s)	426
BssMI	GATC	1 cut(s)	64
BssT1I	CCWWGG	1 cut(s)	426
Bst4CI	ACNGT	1 cut(s)	377
BstAUI	TGTACA	1 cut(s)	438
BstC8I	GCNNGC	6 cut(s)	6, 168, 368, 399, 403, 450
BstDEI	CTNAG	1 cut(s)	183
BstDSI	CCRYGG	1 cut(s)	426
BstF5I	GGATG	2 cut(s)	235, 349
BstKTI	GATC	1 cut(s)	67
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	201
BsuRI	GGCC	1 cut(s)	347
BtgI	CCRYGG	1 cut(s)	426
BtsCI	GGATG	2 cut(s)	235, 349
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	6 cut(s)	6, 168, 368, 399, 403, 450
CaiI	CAGNNNCTG	2 cut(s)	182, 359
Cfr13I	GGNCC	2 cut(s)	128, 346
Csp6I	GTAC	2 cut(s)	418, 439
CviAII	CATG	3 cut(s)	291, 427, 457
CviJI	RGCY	9 cut(s)	17, 22, 116, 166, 297, 329, 347, 366, 448
CviKI_1	RGCY	9 cut(s)	17, 22, 116, 166, 297, 329, 347, 366, 448
CviQI	GTAC	2 cut(s)	418, 439
DdeI	CTNAG	1 cut(s)	183
DpnI	GATC	1 cut(s)	66
DpnII	GATC	1 cut(s)	64
DrdI	GACNNNNNNGTC	1 cut(s)	313
DseDI	GACNNNNNNGTC	1 cut(s)	313
Eco130I	CCWWGG	1 cut(s)	426
Eco24I	GRGCYC	1 cut(s)	299
Eco32I	GATATC	1 cut(s)	409
Eco47I	GGWCC	1 cut(s)	128
Eco57I	CTGAAG	1 cut(s)	296
EcoRV	GATATC	1 cut(s)	409
EcoT14I	CCWWGG	1 cut(s)	426
EcoT22I	ATGCAT	1 cut(s)	292
EcoT38I	GRGCYC	1 cut(s)	299
ErhI	CCWWGG	1 cut(s)	426
FaeI	CATG	3 cut(s)	294, 430, 460
FaiI	YATR	6 cut(s)	158, 268, 292, 332, 428, 458
FaqI	GGGAC	1 cut(s)	141
FatI	CATG	3 cut(s)	290, 426, 456
FauI	CCCGC	1 cut(s)	375
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	222, 336
FriOI	GRGCYC	1 cut(s)	299
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	18, 444
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	1 cut(s)	347
Hin1II	CATG	3 cut(s)	294, 430, 460
HinfI	GANTC	3 cut(s)	92, 139, 380
Hpy166II	GTNNAC	2 cut(s)	111, 441
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	5 cut(s)	12, 68, 220, 253, 353
Hpy8I	GTNNAC	2 cut(s)	111, 441
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	6 cut(s)	4, 62, 176, 199, 247, 290
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
HpyF3I	CTNAG	1 cut(s)	183
Hsp92II	CATG	3 cut(s)	294, 430, 460
KpnI	GGTACC	1 cut(s)	421
Kzo9I	GATC	1 cut(s)	64
LmnI	GCTCC	1 cut(s)	294
LweI	GCATC	1 cut(s)	17
MaeI	CTAG	2 cut(s)	18, 444
MalI	GATC	1 cut(s)	66
MboI	GATC	1 cut(s)	64
MboII	GAAGA	2 cut(s)	295, 383
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	1 cut(s)	299
MluCI	AATT	1 cut(s)	333
MlyI	GAGTC	2 cut(s)	86, 133
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	3 cut(s)	34, 142, 213
Mph1103I	ATGCAT	1 cut(s)	292
MseI	TTAA	2 cut(s)	105, 341
MslI	CAYNNNNRTG	1 cut(s)	240
MspA1I	CMGCKG	1 cut(s)	370
Mva1269I	GAATGC	1 cut(s)	292
MwoI	GCNNNNNNNGC	3 cut(s)	14, 335, 344
NcoI	CCATGG	1 cut(s)	426
NdeII	GATC	1 cut(s)	64
NlaIII	CATG	3 cut(s)	294, 430, 460
NlaIV	GGNNCC	3 cut(s)	129, 296, 419
NsiI	ATGCAT	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	140
PctI	GAATGC	1 cut(s)	292
PfeI	GAWTC	1 cut(s)	380
PflMI	CCANNNNNTGG	1 cut(s)	427
PkrI	GCNGC	1 cut(s)	454
PleI	GAGTC	2 cut(s)	86, 133
PpsI	GAGTC	2 cut(s)	86, 133
PspN4I	GGNNCC	3 cut(s)	129, 296, 419
PspPI	GGNCC	2 cut(s)	128, 346
PstNI	CAGNNNCTG	2 cut(s)	182, 359
PsuI	RGATCY	1 cut(s)	64
RsaI	GTAC	2 cut(s)	419, 440
RsaNI	GTAC	2 cut(s)	418, 439
RseI	CAYNNNNRTG	1 cut(s)	240
SaqAI	TTAA	2 cut(s)	105, 341
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	1 cut(s)	64
Sau96I	GGNCC	2 cut(s)	128, 346
SchI	GAGTC	2 cut(s)	86, 133
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	7 cut(s)	19, 45, 168, 205, 218, 361, 472
SfaNI	GCATC	1 cut(s)	17
SinI	GGWCC	1 cut(s)	128
SmiMI	CAYNNNNRTG	1 cut(s)	240
Sse9I	AATT	1 cut(s)	333
SsiI	CCGC	2 cut(s)	368, 453
SspI	AATATT	1 cut(s)	231
SspMI	CTAG	2 cut(s)	18, 444
StyI	CCWWGG	1 cut(s)	426
TaaI	ACNGT	1 cut(s)	377
TasI	AATT	1 cut(s)	333
TatI	WGTACW	1 cut(s)	438
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	2 cut(s)	105, 341
Tru9I	TTAA	2 cut(s)	105, 341
TscAI	CASTG	1 cut(s)	183
TspGWI	ACGGA	1 cut(s)	132
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	128
XspI	CTAG	2 cut(s)	18, 444
Zsp2I	ATGCAT	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.